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MW353169.1__QRI43997.1__X__00004
Bact-VirMW353169.1__QRI43997.1__X__00004
Identity
- Accession:
- MW353169 ↗
- Kingdom:
- phage
Quality
90.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 148-359
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF00145.24 best | DNA_methylase | 107.4 | 1.50e-30 | 98.1% | 58.3% |
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3g7uA02 | 3.90.120.10 | Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 | 0.78 | 59.0 | 6.74e-01 | 87.7% | 100.0% |
| 3ubtA02 | 3.90.120.10 | Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 | 0.71 | 50.0 | 5.93e-01 | 89.2% | 100.0% |
| 3qv2A02 | 3.90.120.10 | Alpha Beta › Alpha-Beta Complex › DNA Methylase; Chain A, domain 2 › DNA Methylase, subunit A, domain 2 | 0.66 | 38.0 | 5.02e-01 | 72.6% | 100.0% |
ECOD (60)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839088 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 1.00 | 97.0 | 7.83e-01 | 100.0% | 59.2% |
| None | — | 0.95 | 82.0 | 6.77e-01 | 100.0% | 55.6% | |
| 4522824 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.94 | 80.0 | 6.44e-01 | 99.5% | 50.8% |
| 4303907 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.93 | 91.0 | 7.08e-01 | 100.0% | 58.5% |
| 3342198 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.93 | 90.0 | 6.74e-01 | 99.1% | 58.7% |
| None | — | 0.92 | 90.0 | 6.01e-01 | 100.0% | 45.3% | |
| 3908230 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.92 | 90.0 | 5.98e-01 | 100.0% | 44.7% |
| 3848644 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.92 | 90.0 | 6.50e-01 | 100.0% | 61.2% |
| 4969718 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.92 | 89.0 | 8.44e-01 | 99.1% | 94.6% |
| 4931668 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.92 | 89.0 | 6.97e-01 | 100.0% | 60.8% |
| 5030356 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.91 | 88.0 | 7.15e-01 | 99.1% | 59.7% |
| 3295997 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.91 | 88.0 | 6.58e-01 | 100.0% | 62.8% |
| 3465494 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.91 | 88.0 | 6.41e-01 | 100.0% | 57.8% |
| 5027522 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.91 | 81.0 | 8.52e-01 | 96.7% | 100.0% |
| 4588619 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.91 | 88.0 | 6.67e-01 | 99.5% | 66.9% |
| 3602629 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.89 | 69.0 | 5.60e-01 | 99.1% | 46.4% |
| 4464495 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.89 | 83.0 | 6.69e-01 | 100.0% | 57.1% |
| 4628792 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.88 | 85.0 | 6.53e-01 | 100.0% | 56.2% |
| 4611387 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.87 | 71.0 | 5.70e-01 | 100.0% | 48.2% |
| 3686224 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.87 | 63.0 | 5.27e-01 | 100.0% | 46.9% |
| 5044585 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.86 | 70.0 | 5.93e-01 | 99.1% | 55.0% |
| 5021818 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.86 | 82.0 | 6.40e-01 | 99.5% | 52.0% |
| 4585623 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.85 | 77.0 | 6.31e-01 | 100.0% | 56.3% |
| 4974217 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.85 | 81.0 | 6.64e-01 | 99.5% | 59.4% |
| 3965427 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.85 | 75.0 | 6.05e-01 | 100.0% | 52.4% |
| 4586575 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.84 | 72.0 | 5.98e-01 | 100.0% | 55.0% |
| 4966170 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.83 | 80.0 | 6.28e-01 | 99.5% | 55.8% |
| 4416759 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.83 | 64.0 | 5.28e-01 | 100.0% | 48.5% |
| 4444495 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.83 | 78.0 | 6.33e-01 | 98.1% | 58.3% |
| 3184404 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.83 | 80.0 | 6.12e-01 | 100.0% | 59.5% |
| 4014988 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.83 | 80.0 | 5.77e-01 | 100.0% | 47.8% |
| 4197740 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.83 | 80.0 | 6.27e-01 | 100.0% | 55.9% |
| 4952917 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.82 | 78.0 | 7.76e-01 | 100.0% | 95.0% |
| 3838329 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.82 | 78.0 | 6.25e-01 | 100.0% | 55.7% |
| 4927198 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.82 | 75.0 | 6.12e-01 | 100.0% | 56.3% |
| 3631753 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.81 | 79.0 | 6.05e-01 | 100.0% | 56.2% |
| 3689598 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.81 | 78.0 | 5.81e-01 | 100.0% | 47.7% |
| None | — | 0.81 | 77.0 | 6.38e-01 | 99.5% | 61.7% | |
| 3206673 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.80 | 62.0 | 5.03e-01 | 100.0% | 46.8% |
| 3206889 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.79 | 50.0 | 4.37e-01 | 100.0% | 45.4% |
| 4238737 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.78 | 60.0 | 4.88e-01 | 99.5% | 46.4% |
| 3736653 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.78 | 66.0 | 5.16e-01 | 100.0% | 46.0% |
| 3165093 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.76 | 58.0 | 5.03e-01 | 100.0% | 54.3% |
| 4319916 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.75 | 67.0 | 5.59e-01 | 100.0% | 58.2% |
| 4598672 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.75 | 64.0 | 5.39e-01 | 100.0% | 56.1% |
| 154255 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.75 | 62.0 | 4.96e-01 | 99.5% | 46.9% |
| 4441830 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.74 | 67.0 | 5.51e-01 | 99.1% | 56.9% |
| 4932783 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.72 | 61.0 | 5.14e-01 | 100.0% | 56.9% |
| 4322300 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.72 | 62.0 | 4.95e-01 | 100.0% | 49.4% |
| 4533950 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.70 | 67.0 | 5.52e-01 | 100.0% | 59.7% |
| 4222649 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.69 | 66.0 | 5.25e-01 | 100.0% | 57.7% |
| 3964688 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.67 | 64.0 | 5.15e-01 | 99.5% | 56.2% |
| 4542856 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.67 | 64.0 | 5.01e-01 | 100.0% | 60.2% |
| 3276341 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.66 | 60.0 | 4.95e-01 | 100.0% | 56.6% |
| 3638384 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.66 | 63.0 | 4.71e-01 | 100.0% | 54.0% |
| 3693759 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.66 | 63.0 | 4.68e-01 | 100.0% | 53.1% |
| 4029172 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.64 | 57.0 | 4.62e-01 | 99.1% | 52.9% |
| 4120068 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.63 | 60.0 | 4.90e-01 | 100.0% | 60.3% |
| 5004974 | 2003.1.5.1 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DNA_methylase | 0.55 | 51.0 | 4.24e-01 | 98.1% | 59.1% |
| 3452652 | 2003.1.5.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases | 0.53 | 44.0 | 4.51e-01 | 94.3% | 88.6% |
D2
medium
residues 360-401_432-469_528-600
Domain cluster:
rep: SR-VP_0-2_scaffold_141_316084_prodigal-single.1__X__X__00627__D1-47_124-186
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01555.25 best | N6_N4_Mtase | 76.3 | 4.80e-21 | 45.8% | 28.1% |
D3
medium
residues 470-527
Domain cluster:
representative
CATH (3)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5hfjC00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.92 | 86.0 | 5.67e-01 | 100.0% | 28.4% |
| 1booA00 | 3.40.50.150 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 | 0.75 | 66.0 | 4.21e-01 | 100.0% | 23.0% |
| 4hpqB00 | 2.60.270.60 | Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Autophagy-related protein 31 | 0.56 | 49.0 | 3.97e-01 | 100.0% | 71.3% |
ECOD (11)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3839633 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.95 | 89.0 | 5.69e-01 | 100.0% | 25.7% |
| 4086811 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.87 | 80.0 | 5.01e-01 | 100.0% | 23.6% |
| 4946282 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.87 | 80.0 | 5.04e-01 | 100.0% | 24.6% |
| 5049276 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.86 | 79.0 | 5.02e-01 | 100.0% | 28.2% |
| None | — | 0.84 | 68.0 | 4.39e-01 | 100.0% | 20.4% | |
| 5042985 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.84 | 69.0 | 4.43e-01 | 100.0% | 20.4% |
| 4929709 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.82 | 73.0 | 4.62e-01 | 100.0% | 20.7% |
| 4625645 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.74 | 64.0 | 4.02e-01 | 100.0% | 18.4% |
| 4936422 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.73 | 62.0 | 3.91e-01 | 100.0% | 17.8% |
| 4830306 | 2003.1.5.44 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MT-A70 | 0.63 | 56.0 | 3.92e-01 | 100.0% | 31.5% |
| 3254595 | 221.1.1.0 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like | 0.54 | 44.0 | 3.86e-01 | 98.3% | 97.9% |