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MW354667.1__QRI44741.1__BSTP3_195__00195

Bact-Vir

MW354667.1__QRI44741.1__BSTP3_195__00195

Identity

Accession:
MW354667 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Herelleviridae› Nitunavirus› Bacillus_phage_BSTP3

TaxID: 2801528

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-30
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2c9oB02 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.74 55.0 3.81e-01 90.0% 24.8%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.71 54.0 4.09e-01 90.0% 69.6%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 50.0 3.31e-01 100.0% 19.9%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.65 52.0 3.84e-01 96.7% 57.1%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.65 50.0 3.23e-01 100.0% 19.7%
2uvaG01 1.20.1050.120 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.64 51.0 3.39e-01 93.3% 54.4%
2jl8102 3.30.160.850 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.63 46.0 4.17e-01 83.3% 51.1%
5buvB00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.63 48.0 3.06e-01 96.7% 56.6%
1b35B00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.62 44.0 2.57e-01 83.3% 7.8%
2dy1A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 42.0 2.51e-01 90.0% 8.0%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.59 42.0 3.13e-01 100.0% 25.7%
4iajA00 3.30.1490.390 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Protein of unknown function DUF4649 0.59 40.0 3.42e-01 96.7% 39.5%
4e1pA00 3.30.60.230 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › Lsr2, dimerisation domain 0.58 42.0 3.71e-01 86.7% 49.1%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 44.0 2.70e-01 100.0% 33.8%
6l2cB00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.58 44.0 2.54e-01 100.0% 70.7%
1oi6A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 42.0 2.71e-01 100.0% 51.0%
3df8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 2.79e-01 96.7% 19.3%
4g6tB00 6.10.20.120 Special › Helix non-globular › Arc Repressor Mutant, subunit A › 0.56 39.0 3.21e-01 80.0% 59.2%
7d4rB01 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.56 40.0 2.57e-01 93.3% 65.1%
5h4eA01 2.60.110.10 Mainly Beta › Sandwich › Thaumatin › Thaumatin 0.56 42.0 2.58e-01 96.7% 18.2%
8dvhB01 3.30.230.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › 0.56 41.0 2.66e-01 96.7% 31.3%
1t6sA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 41.0 3.12e-01 96.7% 30.2%
4uwmA00 3.20.20.30 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Luciferase-like domain 0.55 39.0 2.25e-01 76.7% 38.1%
3c6cA00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.54 42.0 2.49e-01 96.7% 10.2%
5nr1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 41.0 2.91e-01 90.0% 32.1%
3ejkA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 38.0 2.65e-01 96.7% 55.4%
3cxgA00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 36.0 2.64e-01 86.7% 25.4%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.53 37.0 2.84e-01 80.0% 31.0%
1ub4C00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.53 39.0 3.07e-01 76.7% 28.0%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.52 39.0 2.46e-01 96.7% 39.6%
1r61A00 3.50.30.50 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › Putative cyclase 0.52 36.0 2.29e-01 73.3% 62.9%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 36.0 2.20e-01 100.0% 34.0%
1mukA02 3.90.1850.10 Alpha Beta › Alpha-Beta Complex › RNA-directed RNA polymerase lambda-3 › RNA-directed RNA polymerase lambda-3 0.52 39.0 2.22e-01 100.0% 11.2%
4dnhA01 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.52 38.0 2.21e-01 100.0% 73.8%
1zcdA00 1.20.1530.10 Mainly Alpha › Up-down Bundle › Na+/H+ antiporter like fold › Na+/H+ antiporter like domain 0.51 36.0 2.07e-01 86.7% 5.9%
1nxmA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 34.0 2.29e-01 96.7% 25.3%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.51 38.0 2.34e-01 90.0% 45.3%
5w0kA01 3.90.380.20 Alpha Beta › Alpha-Beta Complex › Naphthalene 1,2-dioxygenase Alpha Subunit; Chain A, domain 1 › Herpesvirus glycoprotein H, domain D-II 0.51 34.0 2.10e-01 96.7% 51.7%
1g8mA02 3.40.140.20 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › AICAR transformylase, duplication domain 0.51 41.0 2.60e-01 93.3% 30.7%
3w6kC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 34.0 2.61e-01 80.0% 21.8%
2x48A00 1.10.10.60 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like 0.51 39.0 3.24e-01 80.0% 79.6%
1xjcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.50 35.0 2.32e-01 90.0% 15.3%
3euoA02 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.50 34.0 2.37e-01 90.0% 20.4%
3kxyT00 6.20.290.10 Special › Other non-globular › Dna Ligase; domain 1 › 0.50 35.0 2.88e-01 90.0% 33.8%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3482807 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.80 61.0 4.36e-01 100.0% 28.7%
5079277 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.71 55.0 4.57e-01 93.3% 46.6%
3388225 857.1.1.0 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like 0.69 51.0 4.02e-01 83.3% 40.0%
3616718 207.1.1.85 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › F-box-like 0.67 48.0 2.72e-01 86.7% 6.0%
3739283 3322.1.1.1 ↗ alpha bundles › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › FAS_N 0.67 51.0 3.44e-01 93.3% 59.2%
3581763 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.65 39.0 3.03e-01 96.7% 24.3%
4336179 3322.1.1.1 ↗ alpha bundles › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › N-terminal domain in fatty acid synthase subunit beta › FAS_N 0.64 48.0 3.28e-01 93.3% 56.9%
4993116 1.1.3.1 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MraZ 0.64 50.0 4.40e-01 93.3% 56.0%
2991657 7602.1.1.1 ↗ a/b three-layered sandwiches › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › Lactate racemase C-terminal domain › LarA_C 0.62 44.0 4.47e-01 86.7% 86.2%
4964333 375.1.1.339 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7560 0.62 44.0 4.11e-01 83.3% 52.5%
5005537 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.62 45.0 3.77e-01 83.3% 41.8%
3598536 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.62 44.0 2.41e-01 83.3% 6.6%
5031928 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.61 43.0 3.64e-01 70.0% 36.4%
2035461 3380.1.1.1 ↗ a+b duplicates or obligate multimers › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Dimerization domain of Lsr2 › Lsr2 0.60 43.0 3.73e-01 86.7% 48.2%
3249581 7512.1.1.6 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_20 0.58 41.0 2.45e-01 90.0% 10.2%
4968601 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 3.12e-01 96.7% 32.4%
4928755 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.56 41.0 3.45e-01 80.0% 40.0%
3598612 220.1.1.230 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26289 0.55 42.0 3.16e-01 86.7% 28.9%
5030872 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.55 41.0 2.83e-01 96.7% 51.5%
4937151 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.54 40.0 3.63e-01 80.0% 44.0%
3736595 2007.1.1.32 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › HET 0.54 45.0 2.67e-01 100.0% 80.7%
224284 857.1.1.1 ↗ a+b duplicates or obligate multimers › Cell division protein ZapA-like › Cell division protein ZapA-like › Cell division protein ZapA-like › ZapA 0.53 39.0 2.93e-01 86.7% 25.8%
4947865 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.53 40.0 3.53e-01 70.0% 40.0%
4947457 2003.1.5.12 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase 0.52 41.0 2.42e-01 96.7% 15.6%
4943801 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.52 37.0 3.48e-01 70.0% 47.5%
4970461 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.51 38.0 2.98e-01 86.7% 80.0%
4007069 2004.1.1.624 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Mg_chelatase, AAA_5 0.50 41.0 2.52e-01 100.0% 14.6%
5030713 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.50 38.0 3.11e-01 70.0% 30.8%
3944499 6050.1.1.0 ↗ a+b two layers › Phage tail assembly chaperone › Phage tail assembly chaperone › Phage tail assembly chaperone 0.50 34.0 2.92e-01 100.0% 37.6%