←Back to structures

MW354678.1__QRI44515.1__X__00049

Bact-Vir

MW354678.1__QRI44515.1__X__00049

Identity

Accession:
MW354678 ↗
Kingdom:
phage

Quality

86.4 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Bacillus_phage_BSTP12

TaxID: 2801513

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-85
PDB
Domain cluster: rep: OR475272.1__WNM67085.1__SEA_SCHOMBER_64__00064__D3-92
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01807.26 best Zn_ribbon_DnaG 33.6 3.80e-08 94.0% 54.1%
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1d0qA00 3.90.580.10 Alpha Beta › Alpha-Beta Complex › DNA Primase; Chain A › Zinc finger, CHC2-type domain 0.83 72.0 6.69e-01 100.0% 76.5%
4g6tA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.61 45.0 3.97e-01 80.7% 87.5%
3v1vA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.57 44.0 2.96e-01 83.1% 36.9%
2k4jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.57 40.0 3.71e-01 83.1% 58.1%
3a2bA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.56 42.0 3.61e-01 80.7% 65.2%
1y6uA01 3.90.105.50 Alpha Beta › Alpha-Beta Complex › Molybdopterin biosynthesis moea protein, domain 2 › 0.55 24.0 2.93e-01 95.2% 57.1%
4udqA02 3.30.410.40 Alpha Beta › 2-Layer Sandwich › Cholesterol Oxidase; domain 2 › 0.54 46.0 3.70e-01 98.8% 73.3%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.52 39.0 3.96e-01 94.0% 79.5%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
8015 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.83 72.0 6.69e-01 100.0% 76.5%
4166935 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.82 72.0 6.74e-01 100.0% 78.0%
4539347 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.80 71.0 6.65e-01 100.0% 80.0%
4680318 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.79 70.0 6.80e-01 100.0% 88.9%
5003468 375.1.1.15 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-CHC2 0.75 68.0 6.26e-01 100.0% 81.0%
3944184 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.70 62.0 5.78e-01 100.0% 87.6%
3576759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 50.0 5.38e-01 81.9% 98.6%
4995759 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.66 56.0 5.67e-01 98.8% 100.0%
3928378 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 46.0 4.58e-01 79.5% 74.1%
3786106 4357.1.1.3 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE_2 0.54 39.0 3.70e-01 78.3% 92.4%
3167601 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.53 38.0 3.70e-01 77.1% 100.0%
3789912 4184.1.1.2 ↗ beta barrels › MFPT repeat › MFPT repeat › MFPT repeat › MFP2b 0.53 37.0 3.72e-01 72.3% 71.8%
3789432 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 41.0 2.60e-01 86.7% 36.6%
4203665 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.52 36.0 3.74e-01 71.1% 81.3%
D2 high residues 870-966
PDB
Domain cluster: rep: IMGVR_UViG_3300021513_000102-3300021513-Ga0190315_10005481__D86-160
CATH (73)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wteA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.85 61.0 7.02e-01 79.4% 100.0%
4rs8A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.84 62.0 6.63e-01 76.3% 91.7%
3ecoB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.81 65.0 5.87e-01 84.5% 63.6%
2a61B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 62.0 5.44e-01 83.5% 56.9%
1lnwF01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 62.0 5.63e-01 84.5% 62.9%
7dvrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 65.0 5.65e-01 85.6% 65.2%
2ia2A01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 54.0 6.38e-01 73.2% 98.5%
3oopA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 61.0 5.45e-01 80.4% 59.0%
4b8xA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.80 64.0 5.57e-01 84.5% 59.3%
3e6mA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 61.0 5.25e-01 80.4% 54.1%
2qvoA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 58.0 6.16e-01 76.3% 92.0%
2fbhA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 61.0 5.36e-01 80.4% 59.9%
4em2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 64.0 5.47e-01 85.6% 56.7%
2rdpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 62.0 5.43e-01 82.5% 57.1%
5y6iA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.79 56.0 6.32e-01 75.3% 97.3%
5e1wA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 63.0 5.20e-01 85.6% 51.8%
2nyxB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 64.0 5.58e-01 86.6% 59.9%
4asnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 63.0 6.55e-01 86.6% 100.0%
5trdA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 59.0 6.27e-01 78.4% 97.6%
3bj6B00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 63.0 5.32e-01 84.5% 57.0%
2obpA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.78 57.0 6.16e-01 76.3% 100.0%
1r7jA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 56.0 5.85e-01 76.3% 81.1%
6j0eB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 65.0 6.05e-01 89.7% 79.5%
6pcoC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 62.0 5.51e-01 84.5% 63.6%
2gxgA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 61.0 5.33e-01 83.5% 60.7%
4hw0C00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 56.0 5.78e-01 76.3% 82.8%
1mkmB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 53.0 5.93e-01 73.2% 90.8%
1r1uB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.77 64.0 6.58e-01 89.7% 94.6%
1zarA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 64.0 6.71e-01 90.7% 98.9%
6uvuA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 63.0 6.21e-01 88.7% 83.7%
3m8eA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 66.0 6.52e-01 92.8% 92.1%
8agaA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 59.0 5.37e-01 81.4% 66.7%
4a6dA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 57.0 5.83e-01 78.4% 81.9%
3broD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 59.0 5.23e-01 81.4% 62.7%
3gw2A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 65.0 6.65e-01 91.8% 95.7%
3cjnA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.76 59.0 5.06e-01 81.4% 54.8%
3cuoD00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 6.20e-01 85.6% 89.4%
5jbrA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 54.0 5.73e-01 74.2% 83.7%
2ethA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 60.0 5.26e-01 84.5% 61.7%
1r1tA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 63.0 6.31e-01 89.7% 88.8%
3lstA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 52.0 5.48e-01 76.3% 80.2%
3pqkA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.75 61.0 6.07e-01 86.6% 86.9%
5eriA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 60.0 5.11e-01 85.6% 56.2%
2l02A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 5.43e-01 71.1% 81.7%
3gwzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 55.0 5.71e-01 78.4% 84.3%
2oqgB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 61.0 5.86e-01 87.6% 80.6%
2xubA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 50.0 5.51e-01 71.1% 85.9%
7bqjA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 5.65e-01 78.4% 87.7%
2r3sB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.74 52.0 5.65e-01 75.3% 87.7%
1ulyA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 60.0 6.30e-01 94.8% 95.5%
2jscB01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 57.0 6.17e-01 84.5% 100.0%
1ft9A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 52.0 5.75e-01 74.2% 98.7%
3dv8A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 54.0 5.97e-01 80.4% 96.2%
4d7kA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 61.0 6.16e-01 90.7% 93.8%
4gcvC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.72 58.0 5.06e-01 85.6% 83.7%
1x1aA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 61.0 4.99e-01 92.8% 84.2%
7cluA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 56.0 5.81e-01 82.5% 93.3%
1sfxB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 53.0 5.24e-01 78.4% 73.1%
3k69A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 4.64e-01 80.4% 96.0%
4ev0A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.71 54.0 5.96e-01 85.6% 100.0%
2p4wA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 61.0 6.04e-01 94.8% 89.3%
1z6tA04 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 56.0 5.93e-01 87.6% 100.0%
2gauA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 52.0 5.61e-01 79.4% 98.8%
8amzO01 1.25.40.570 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.68 46.0 3.14e-01 70.1% 49.4%
2fmyA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.68 50.0 5.44e-01 78.4% 100.0%
3e97A02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 51.0 5.64e-01 79.4% 100.0%
2d1hB00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.65e-01 91.8% 89.8%
2y75A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 53.0 4.88e-01 84.5% 87.2%
3r0aA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.67 56.0 5.18e-01 89.7% 73.3%
3szpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 46.0 4.75e-01 77.3% 79.8%
5y2vC01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 47.0 4.93e-01 76.3% 85.9%
2esnA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.65 50.0 5.18e-01 86.6% 89.9%
4tv7D01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.61 44.0 4.69e-01 80.4% 84.7%
ECOD (97)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5000330 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.85 65.0 7.09e-01 79.4% 100.0%
4929103 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.83 62.0 6.19e-01 77.3% 79.0%
5073681 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.83 68.0 6.40e-01 90.7% 73.0%
5033846 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.82 69.0 6.48e-01 88.7% 74.8%
5058358 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.82 63.0 6.66e-01 79.4% 96.5%
2511579 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.82 68.0 7.04e-01 87.6% 98.9%
4940407 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.82 60.0 6.23e-01 76.3% 87.8%
3603567 101.1.2.32 ↗ alpha arrays › HTH › HTH › winged helix domain › Rrf2 0.81 57.0 6.63e-01 78.4% 100.0%
4979317 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.81 68.0 7.20e-01 87.6% 100.0%
4929213 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 60.0 5.60e-01 77.3% 73.3%
4937866 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.81 58.0 6.21e-01 74.2% 88.2%
4955891 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.81 59.0 6.64e-01 75.3% 100.0%
4949735 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.81 59.0 6.31e-01 76.3% 90.6%
4991142 101.1.2.46 ↗ alpha arrays › HTH › HTH › winged helix domain › HrcA_DNA-bdg 0.81 60.0 6.56e-01 77.3% 97.5%
5040773 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.81 63.0 6.41e-01 82.5% 84.2%
5054482 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.81 56.0 6.47e-01 71.1% 100.0%
4967461 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 66.0 6.67e-01 86.6% 92.6%
5018467 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 58.0 5.99e-01 75.3% 88.2%
4982701 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.80 66.0 7.03e-01 86.6% 100.0%
3285732 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.80 74.0 6.44e-01 99.0% 100.0%
140762 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.80 61.0 5.38e-01 80.4% 56.8%
3969257 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.80 55.0 6.40e-01 75.3% 98.6%
3943162 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.80 66.0 6.34e-01 88.7% 82.7%
3973067 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.79 55.0 6.37e-01 75.3% 98.6%
3943470 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.79 58.0 6.16e-01 77.3% 85.9%
5032313 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.79 59.0 5.67e-01 78.4% 70.9%
3963899 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.79 61.0 6.50e-01 82.5% 92.9%
5000128 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.79 65.0 6.88e-01 89.7% 100.0%
3969964 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.79 56.0 6.00e-01 76.3% 84.7%
4546696 101.1.2.141 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_24 0.79 61.0 6.33e-01 81.4% 93.3%
4994131 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 5.71e-01 79.4% 73.6%
3284858 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.78 63.0 6.08e-01 85.6% 77.3%
4969567 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 60.0 6.41e-01 80.4% 91.8%
5050392 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.78 56.0 4.86e-01 77.3% 50.7%
5012154 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.78 60.0 6.60e-01 82.5% 100.0%
4987953 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.78 62.0 6.59e-01 83.5% 95.3%
4932911 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.78 66.0 6.70e-01 90.7% 96.8%
5069901 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.78 58.0 6.01e-01 77.3% 90.0%
4990436 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.78 57.0 6.44e-01 78.4% 100.0%
5060973 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 59.0 5.98e-01 79.4% 83.2%
4928978 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 6.46e-01 87.6% 94.7%
5001004 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 64.0 5.99e-01 89.7% 74.2%
5082276 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 64.0 6.63e-01 88.7% 98.9%
4993096 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 56.0 6.15e-01 76.3% 98.8%
4992529 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 55.0 5.75e-01 74.2% 81.1%
5020805 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 63.0 6.31e-01 87.6% 87.0%
5075195 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.77 65.0 6.10e-01 91.8% 75.7%
2389424 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 65.0 6.52e-01 89.7% 93.8%
4953302 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 62.0 6.59e-01 85.6% 100.0%
3283051 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 64.0 6.13e-01 88.7% 80.0%
4456406 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 61.0 6.22e-01 84.5% 89.5%
3502250 101.1.2.110 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_IclR 0.77 55.0 5.60e-01 76.3% 75.8%
5017324 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 64.0 6.16e-01 88.7% 79.8%
4967668 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.77 52.0 5.69e-01 70.1% 87.5%
4930541 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.77 63.0 6.64e-01 88.7% 100.0%
3953589 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.76 62.0 6.19e-01 86.6% 88.9%
4960070 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 57.0 5.89e-01 77.3% 90.0%
5016926 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.76 66.0 5.82e-01 91.8% 65.9%
2701 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.76 64.0 6.71e-01 90.7% 98.9%
5044574 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 54.0 4.61e-01 78.4% 47.3%
4966124 101.1.2.924 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7342 0.76 54.0 4.54e-01 73.2% 47.7%
3279731 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.76 63.0 6.43e-01 88.7% 91.6%
3282985 101.1.2.508 ↗ alpha arrays › HTH › HTH › winged helix domain › PF25872 0.76 62.0 6.61e-01 88.7% 98.8%
4959159 101.1.2.109 ↗ alpha arrays › HTH › HTH › winged helix domain › Rio2_N 0.76 62.0 6.60e-01 87.6% 100.0%
4984599 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.76 62.0 6.28e-01 87.6% 91.6%
1266087 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.76 59.0 5.82e-01 81.4% 83.2%
4944376 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 63.0 5.92e-01 88.7% 75.7%
4975589 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.76 56.0 6.22e-01 84.5% 100.0%
3971106 101.1.2.136 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_20 0.75 61.0 6.07e-01 86.6% 90.0%
4982778 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 60.0 6.22e-01 84.5% 94.4%
4997435 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 58.0 5.59e-01 81.4% 83.6%
5048947 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 60.0 5.95e-01 83.5% 84.0%
5068452 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.75 55.0 5.87e-01 87.6% 87.1%
5058068 101.1.2.150 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_45 0.75 57.0 5.93e-01 79.4% 87.8%
5013841 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.75 63.0 5.77e-01 90.7% 69.6%
5025927 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 66.0 6.35e-01 95.9% 91.8%
5035255 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.75 57.0 5.81e-01 80.4% 92.6%
4243508 101.1.2.14 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_5 0.74 63.0 6.20e-01 91.8% 93.3%
3263857 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.74 58.0 5.78e-01 82.5% 84.0%
5071779 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.74 54.0 4.70e-01 77.3% 52.1%
4998022 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.73 58.0 6.25e-01 87.6% 97.6%
5073938 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.73 54.0 5.75e-01 87.6% 88.2%
5032275 101.1.2.15 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR 0.73 60.0 5.97e-01 87.6% 92.0%
4079854 101.1.2.530 ↗ alpha arrays › HTH › HTH › winged helix domain › HVO_A0114 0.73 54.0 6.06e-01 84.5% 100.0%
5067037 101.1.2.142 ↗ alpha arrays › HTH › HTH › winged helix domain › HTH_Crp_2 0.72 54.0 5.87e-01 77.3% 93.8%
374782 101.1.2.135 ↗ alpha arrays › HTH › HTH › winged helix domain › MarR_2 0.72 56.0 4.97e-01 83.5% 58.6%
4962699 101.1.2.924 ↗ alpha arrays › HTH › HTH › winged helix domain › DUF7342 0.72 52.0 4.28e-01 74.2% 45.5%
3249801 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.71 54.0 5.50e-01 82.5% 82.1%
3290858 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.71 57.0 5.60e-01 90.7% 80.0%
4956336 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.70 55.0 5.47e-01 87.6% 80.0%
4268623 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 55.0 4.95e-01 82.5% 76.9%
4012389 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.70 58.0 5.08e-01 88.7% 73.6%
2688 101.1.2.30 ↗ alpha arrays › HTH › HTH › winged helix domain › TrmB 0.69 57.0 5.62e-01 90.7% 84.3%
4090142 101.1.2.88 ↗ alpha arrays › HTH › HTH › winged helix domain › Dimerisation 0.69 59.0 5.75e-01 92.8% 96.2%
5050915 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 56.0 3.80e-01 87.6% 53.9%
5001229 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.68 54.0 4.12e-01 84.5% 58.6%
5051337 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.62 54.0 4.77e-01 93.8% 66.7%
D3 medium residues 90-171
PDB
Domain cluster: rep: IMGVR_UViG_3300021426_000003-3300021426-Ga0224482_10000072175__D138-224
CATH (32)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.87 82.0 6.76e-01 100.0% 91.8%
2au3A02 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.84 78.0 6.65e-01 100.0% 95.3%
5w36B01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.82 75.0 6.32e-01 100.0% 94.0%
1eqnB01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.81 74.0 6.40e-01 100.0% 96.0%
1q57G01 2.20.25.180 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.74 58.0 6.09e-01 97.6% 93.2%
1vhsA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 47.0 3.88e-01 89.0% 63.0%
4jxqA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 46.0 3.67e-01 87.8% 86.4%
2jlmA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.59 46.0 3.71e-01 87.8% 90.4%
2py5A01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.59 42.0 3.25e-01 100.0% 33.2%
4h89A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.58 45.0 3.70e-01 89.0% 62.5%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 45.0 3.87e-01 89.0% 77.0%
3n7zA02 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.57 44.0 3.71e-01 89.0% 59.2%
3d8pB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 44.0 3.68e-01 89.0% 63.1%
3efaA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 45.0 3.89e-01 93.9% 63.7%
4kc7A02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.56 40.0 3.79e-01 75.6% 89.9%
3tthB00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 43.0 3.57e-01 87.8% 95.7%
4arnA00 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.55 38.0 2.65e-01 72.0% 27.8%
3p2hA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 46.0 3.69e-01 97.6% 62.0%
2ft0A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.55 43.0 3.32e-01 91.5% 45.9%
2cy2A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 42.0 3.44e-01 87.8% 94.8%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 43.0 3.58e-01 92.7% 60.4%
3gy9A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 43.0 3.68e-01 92.7% 65.5%
4kvxA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.54 42.0 3.52e-01 87.8% 63.2%
3lodA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.53 42.0 3.58e-01 89.0% 59.3%
5flwA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 45.0 3.14e-01 97.6% 76.8%
1ei5A03 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.53 47.0 4.33e-01 96.3% 93.1%
5cwaA00 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.53 45.0 2.77e-01 93.9% 83.2%
3hi2B00 3.30.2310.40 Alpha Beta › 2-Layer Sandwich › YaeB-like fold › 0.53 41.0 3.94e-01 85.4% 99.0%
4r03A00 2.40.128.720 Mainly Beta › Beta Barrel › Lipocalin › 0.52 39.0 3.61e-01 80.5% 86.2%
2hv2A03 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.66e-01 100.0% 72.5%
2k4rA00 2.40.20.10 Mainly Beta › Beta Barrel › Plasminogen Kringle 4 › Plasminogen Kringle 4 0.50 37.0 3.78e-01 79.3% 100.0%
3i9v700 3.30.920.80 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › NADH-quinone oxidoreductase, subunit 15 0.50 42.0 3.72e-01 97.6% 81.9%
ECOD (38)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4588732 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.87 81.0 6.72e-01 100.0% 96.3%
4096247 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.86 80.0 6.85e-01 100.0% 93.6%
4099289 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.86 80.0 6.72e-01 100.0% 90.8%
4431937 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.85 79.0 6.48e-01 100.0% 88.6%
3589490 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.85 79.0 6.57e-01 100.0% 97.0%
4345683 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.85 79.0 6.72e-01 100.0% 96.8%
3387388 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 78.0 6.70e-01 100.0% 95.2%
4206082 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 78.0 6.58e-01 100.0% 93.1%
1407259 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 78.0 6.69e-01 100.0% 96.8%
4157635 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 78.0 6.66e-01 100.0% 95.2%
4434598 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 78.0 6.58e-01 100.0% 90.8%
4186968 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.84 78.0 6.57e-01 100.0% 89.2%
4467859 4023.1.1.1 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › DNAG_N 0.83 77.0 6.61e-01 100.0% 96.0%
3948312 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.77 71.0 6.60e-01 98.8% 97.0%
3074400 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.76 70.0 6.53e-01 100.0% 99.0%
6450 4023.1.1.2 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › Helic-prim_T7_N 0.73 57.0 5.97e-01 97.6% 93.2%
3896126 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.73 66.0 6.19e-01 100.0% 94.0%
4537309 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.72 64.0 6.10e-01 100.0% 94.7%
3511263 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.71 58.0 5.53e-01 100.0% 76.8%
4111345 4023.1.1.0 ↗ a+b two layers › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core › N-terminal a+b domain in DNA primase core 0.70 55.0 5.68e-01 100.0% 93.3%
3593031 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 3.37e-01 72.0% 44.0%
3642805 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 44.0 2.87e-01 80.5% 42.9%
5003263 211.1.1.0 ↗ a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.58 40.0 3.58e-01 72.0% 86.7%
3350473 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.57 34.0 3.61e-01 81.7% 67.1%
4000403 4.1.1.28 ↗ beta barrels › SH3 › SH3 › SH3 › BPL_C 0.57 29.0 3.59e-01 92.7% 80.0%
4975800 241.1.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone 0.57 39.0 3.35e-01 72.0% 83.6%
3513186 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.56 41.0 4.02e-01 98.8% 72.2%
4220405 213.1.1.3 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Autoind_synth 0.55 44.0 3.46e-01 93.9% 64.4%
3283031 4.6.1.0 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain 0.54 42.0 4.00e-01 96.3% 71.6%
3240894 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.53 39.0 2.85e-01 80.5% 77.0%
3715979 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.53 45.0 3.93e-01 96.3% 75.4%
863 9.4.1.1 ↗ beta barrels › Lipocalins/Streptavidin › D-aminopeptidase, middle and C-terminal domains › D-aminopeptidase, middle and C-terminal domains › DAP_B 0.53 47.0 4.31e-01 96.3% 92.2%
4494959 213.1.1.1 ↗ a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) › Acetyltransf_1 0.52 43.0 3.74e-01 97.6% 69.3%
3801884 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.52 44.0 3.03e-01 97.6% 87.5%
3968457 101.15.1.2 ↗ alpha arrays › HTH › LysM domain › LysM domain › OapA 0.51 40.0 3.98e-01 86.6% 94.1%
3624656 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.51 40.0 4.16e-01 100.0% 96.0%
3415741 192.2.1.0 ↗ alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.51 36.0 3.01e-01 75.6% 56.6%
4039533 3321.1.1.1 ↗ a+b two layers › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › Meander beta sheet domain in fatty acid synthase subunit beta › FAS_meander 0.50 41.0 3.41e-01 93.9% 77.5%
D4 medium residues 172-301
PDB
Domain cluster: rep: IMGVR_UViG_3300042256_000037-3300042256-Ga0451646_00357_7329_9968__D263-392
Pfam (2)
AccessionNameScoreE-valueQ covHMM cov
PF13155.13 best Toprim_2 34.8 2.40e-08 65.4% 100.0%
PF13662.13 Toprim_4 26.4 8.90e-06 59.2% 90.4%
CATH (80)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5vazA02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.85 75.0 7.59e-01 93.1% 100.0%
5gujA02 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.85 75.0 7.72e-01 93.8% 100.0%
2au3A03 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.83 74.0 7.63e-01 94.6% 100.0%
2fcjB00 3.40.1360.10 Alpha Beta › 3-Layer(aba) Sandwich › Dna Topoisomerase Vi A Subunit; Chain: A, domain 2 › 0.75 57.0 5.94e-01 80.8% 87.3%
5gvcB01 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.73 59.0 5.47e-01 84.6% 100.0%
1gkuB05 3.40.50.140 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.73 60.0 6.25e-01 86.2% 100.0%
5hc2B00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.69 59.0 4.34e-01 93.1% 76.9%
3lcrB00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.67 58.0 4.54e-01 94.6% 84.9%
4rz2B00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.67 51.0 4.07e-01 80.0% 94.1%
2ehdA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.66 51.0 4.40e-01 83.1% 95.7%
3u49D00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.65 51.0 4.16e-01 82.3% 95.0%
1g9sA00 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 45.0 4.15e-01 70.8% 76.3%
5d6oA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.65 56.0 4.12e-01 94.6% 94.8%
1tjnA00 3.40.50.1400 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.65 45.0 4.61e-01 70.8% 94.4%
4s1wB01 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.64 47.0 4.12e-01 76.9% 65.5%
2yvaA00 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.64 48.0 4.24e-01 79.2% 76.7%
1yt8A02 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.64 43.0 4.62e-01 73.8% 81.5%
3fdjA01 3.40.50.10440 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Dihydroxyacetone kinase; domain 1 0.64 49.0 5.31e-01 80.8% 98.2%
3d1pA00 3.40.250.10 Alpha Beta › 3-Layer(aba) Sandwich › Oxidized Rhodanese; domain 1 › Rhodanese-like domain 0.63 45.0 4.72e-01 73.8% 84.2%
3fj1A02 3.40.50.10490 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glucose-6-phosphate isomerase like protein; domain 1 0.63 46.0 4.57e-01 76.2% 88.2%
1u9yA02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.63 44.0 4.51e-01 86.2% 75.0%
5ktkA00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 51.0 3.56e-01 89.2% 81.2%
5jnmA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.62 51.0 4.41e-01 88.5% 92.6%
3s5jA02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.62 45.0 4.48e-01 83.8% 72.3%
4c7oA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 47.0 4.13e-01 80.8% 95.4%
3l6dA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.61 48.0 4.46e-01 83.8% 97.6%
2x7jA01 3.40.50.970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.61 44.0 3.86e-01 74.6% 86.7%
3iprA00 3.40.50.510 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphotransferase system, mannose-type IIA component 0.61 47.0 4.65e-01 81.5% 89.8%
4h0cA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.61 51.0 4.42e-01 93.1% 96.7%
4am6A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.60 49.0 4.18e-01 86.9% 91.9%
3lrtA02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.60 46.0 4.58e-01 86.2% 78.0%
5g6rA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.60 48.0 4.51e-01 85.4% 100.0%
1flaA00 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.60 45.0 4.46e-01 87.7% 74.6%
5t3oA02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.59 46.0 4.55e-01 81.5% 88.5%
7kdyB01 3.40.50.280 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin-binding domain 0.59 47.0 4.48e-01 84.6% 96.7%
3tixB02 3.40.1010.30 Alpha Beta › 3-Layer(aba) Sandwich › Cobalt-precorrin-4 Transmethylase; domain 1 › 0.59 41.0 4.20e-01 83.1% 75.0%
1iy8A00 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.58 51.0 4.07e-01 95.4% 70.5%
2xheA01 3.40.50.2060 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Sec1/Munc18 (SM) protein, domain 1 0.58 41.0 4.20e-01 86.9% 74.2%
3dpuA02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.58 46.0 4.32e-01 84.6% 98.1%
3qyfA01 3.40.50.10770 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Hypothetical protein VC1899 like domain (Restriction endonuclease-like) 0.57 47.0 4.39e-01 89.2% 99.4%
2bm8B02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.57 45.0 4.18e-01 84.6% 90.0%
1ao0A02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.57 44.0 4.41e-01 85.4% 79.5%
5v7nA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.57 45.0 4.49e-01 83.8% 96.2%
2dkaB01 3.40.120.10 Alpha Beta › 3-Layer(aba) Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 3 › Alpha-D-Glucose-1,6-Bisphosphate, subunit A, domain 3 0.57 40.0 3.76e-01 72.3% 88.2%
3qxcA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.57 45.0 3.75e-01 83.8% 96.9%
1nni100 3.40.50.360 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Flavodoxin domain 0.56 49.0 4.45e-01 93.1% 72.9%
4xrpA02 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.56 42.0 4.22e-01 80.0% 77.5%
6qmmA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 46.0 3.92e-01 88.5% 92.2%
4hg2B01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 45.0 4.15e-01 85.4% 86.9%
1pg4A01 3.40.50.12780 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain 0.56 48.0 3.25e-01 93.8% 65.1%
1qyrA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 45.0 4.01e-01 85.4% 87.5%
1npdB02 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.56 45.0 4.32e-01 84.6% 80.5%
1sr8A03 3.40.50.10720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › CbiD-like domains 0.56 38.0 4.42e-01 72.3% 100.0%
4dcmA01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.56 46.0 4.15e-01 87.7% 80.5%
2pg3A00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.56 42.0 3.59e-01 80.0% 100.0%
4evwA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.56 42.0 3.38e-01 80.8% 42.0%
2w7tA00 3.40.50.880 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain 0.55 42.0 3.42e-01 81.5% 92.0%
1fp1D02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.55 44.0 3.60e-01 84.6% 69.8%
7zllA01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.54 39.0 3.07e-01 78.5% 35.0%
5dj1A02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 43.0 3.60e-01 86.2% 59.6%
2o3jB01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 46.0 3.94e-01 93.1% 82.9%
4rkcA02 3.40.640.10 Alpha Beta › 3-Layer(aba) Sandwich › Aspartate Aminotransferase; domain 2 › Type I PLP-dependent aspartate aminotransferase-like (Major domain) 0.54 42.0 3.54e-01 86.2% 61.6%
3oc4A02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 39.0 4.09e-01 87.7% 82.5%
1u8xX01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.54 40.0 3.68e-01 76.9% 84.3%
4fypB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.53 44.0 3.75e-01 90.8% 68.3%
1hyhA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 44.0 4.28e-01 87.7% 92.2%
4i62A02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.53 31.0 3.56e-01 70.0% 79.6%
2d4aD01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 43.0 4.22e-01 86.9% 92.9%
4e94A02 3.50.30.60 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › LD-carboxypeptidase A C-terminal domain-like 0.53 45.0 3.98e-01 91.5% 66.5%
3vpgA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.53 43.0 4.20e-01 86.9% 92.9%
1i9gA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 43.0 3.84e-01 87.7% 67.4%
1nv8A02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.53 42.0 3.68e-01 85.4% 77.7%
6r8gA01 3.40.50.720 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain 0.52 42.0 4.11e-01 86.9% 93.0%
3c3pA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 43.0 3.74e-01 89.2% 65.7%
5dxfB01 3.40.50.2000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Glycogen Phosphorylase B; 0.52 44.0 3.58e-01 94.6% 64.8%
3tmaA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 43.0 3.86e-01 89.2% 72.9%
3uwpA02 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.52 41.0 3.52e-01 86.9% 57.7%
1h0hA03 3.40.228.10 Alpha Beta › 3-Layer(aba) Sandwich › Dimethylsulfoxide Reductase; domain 2 › Dimethylsulfoxide Reductase, domain 2 0.51 42.0 3.33e-01 88.5% 90.3%
1ne2B00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.51 40.0 3.63e-01 85.4% 79.8%
1wekF01 3.40.50.450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.51 42.0 3.74e-01 91.5% 95.3%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4504313 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.86 78.0 8.00e-01 94.6% 100.0%
4191035 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.85 75.0 7.71e-01 93.1% 100.0%
5003470 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.85 62.0 7.15e-01 75.4% 100.0%
4507511 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.85 79.0 6.82e-01 98.5% 80.0%
3837934 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.84 76.0 7.74e-01 93.8% 100.0%
3583702 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.84 74.0 7.67e-01 96.2% 100.0%
4345684 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.84 72.0 7.53e-01 90.8% 100.0%
4078805 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.84 76.0 7.81e-01 96.9% 100.0%
4305698 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.83 74.0 7.53e-01 93.1% 99.2%
4429071 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.83 74.0 7.37e-01 94.6% 92.6%
4437562 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.82 74.0 7.53e-01 94.6% 100.0%
4403556 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.82 71.0 7.37e-01 98.5% 98.3%
4023806 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.82 73.0 7.01e-01 93.1% 100.0%
4403849 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.81 69.0 7.26e-01 96.9% 100.0%
4041525 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.81 69.0 7.19e-01 89.2% 100.0%
5053984 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.81 69.0 7.18e-01 97.7% 96.7%
4089575 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.81 70.0 7.28e-01 98.5% 98.3%
1407540 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.81 71.0 7.32e-01 93.1% 100.0%
4933255 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.80 56.0 5.77e-01 71.5% 80.8%
4426393 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.80 72.0 7.22e-01 95.4% 99.2%
4675929 2006.1.3.6 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_2 0.80 71.0 7.22e-01 93.8% 99.2%
4134333 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.78 70.0 6.65e-01 97.7% 82.0%
4941473 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.78 55.0 5.66e-01 72.3% 81.6%
4236821 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.78 55.0 5.62e-01 72.3% 83.2%
3519195 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.77 67.0 6.99e-01 92.3% 100.0%
4995761 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.77 62.0 6.65e-01 93.1% 100.0%
4946248 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.77 70.0 6.95e-01 96.9% 95.6%
3838295 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.77 61.0 6.42e-01 83.1% 99.2%
4638791 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.77 60.0 5.26e-01 81.5% 96.8%
3285475 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.76 68.0 6.73e-01 95.4% 98.5%
5008810 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.76 62.0 6.12e-01 83.8% 97.0%
4392313 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.76 61.0 5.72e-01 83.8% 98.7%
1572168 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.76 61.0 5.41e-01 83.8% 97.7%
5001224 2006.1.3.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain 0.75 61.0 5.19e-01 83.8% 99.5%
4970599 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.75 54.0 5.29e-01 74.6% 80.7%
4995266 7522.1.1.4 ↗ a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.75 60.0 6.24e-01 92.3% 91.7%
5036017 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.74 63.0 5.05e-01 87.7% 77.4%
4948683 2006.1.3.7 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim_4 0.74 55.0 5.69e-01 75.4% 88.3%
4418350 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.74 62.0 5.26e-01 86.2% 98.5%
4622340 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.74 59.0 5.94e-01 85.4% 83.8%
4956612 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.74 52.0 5.44e-01 72.3% 85.0%
4954869 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.72 57.0 5.71e-01 82.3% 100.0%
4947932 7522.1.1.0 ↗ a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.71 58.0 6.12e-01 91.5% 98.3%
5024065 2006.1.3.2 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › Toprim 0.70 55.0 5.49e-01 83.1% 85.9%
5017203 7522.1.1.0 ↗ a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like 0.69 57.0 6.04e-01 93.1% 100.0%
5036375 2007.6.1.5 ↗ a/b three-layered sandwiches › Flavodoxin-like › Ribosomal protein S2/SIS domain › Ribosomal protein S2/SIS domain › bact-PGI_C 0.68 50.0 4.71e-01 77.7% 70.6%
4968818 7522.1.1.4 ↗ a/b three-layered sandwiches › TK C-terminal domain-like › TK C-terminal domain-like › TK C-terminal domain-like › PFOR_II 0.67 53.0 5.56e-01 91.5% 90.8%
4947674 2007.2.1.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins 0.65 50.0 4.71e-01 80.8% 100.0%
4968859 2005.1.1.3 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Usp 0.64 42.0 4.30e-01 79.2% 68.8%
5048542 2007.1.3.4 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › B12-binding 0.60 47.0 4.17e-01 82.3% 79.5%
3218463 2006.1.6.0 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like 0.58 45.0 3.95e-01 82.3% 87.5%
3801885 2007.1.3.28 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like › Glyco_transf_61 0.57 45.0 4.04e-01 83.1% 81.7%
1735648 7592.1.1.2 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Cas_APE2256 0.57 46.0 3.97e-01 86.9% 99.0%
4947729 2003.1.1.389 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › PDH_C 0.57 46.0 4.11e-01 86.9% 89.7%
4037921 2003.1.5.155 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD, Methyltransf_25 0.57 46.0 3.92e-01 86.9% 81.0%
5063199 7592.1.1.6 ↗ a/b three-layered sandwiches › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › CARF (CRISPR-associated Rossmann fold) domains › Csa3_N 0.56 45.0 4.47e-01 85.4% 97.8%
3412061 2007.1.3.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › CheY-like 0.56 44.0 4.10e-01 85.4% 75.3%
3400659 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.56 44.0 4.08e-01 83.8% 74.5%
3988034 7516.1.1.102 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2, Glyco_trans_2_3 0.56 42.0 3.05e-01 78.5% 96.6%
4080201 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.56 44.0 3.89e-01 85.4% 82.6%
3286566 7577.1.1.1 ↗ a/b three-layered sandwiches › PLP-dependent transferases › PLP-dependent transferases › PLP-dependent transferases › Aminotran_1_2 0.56 41.0 3.22e-01 93.8% 34.6%
3391759 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.55 44.0 4.24e-01 85.4% 78.7%
3404837 7585.1.1.0 ↗ a/b three-layered sandwiches › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins › Rossmann-like domains in Sec1/munc18-like proteins 0.55 44.0 4.22e-01 85.4% 76.1%
4409735 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.55 46.0 3.95e-01 90.8% 83.3%
3732502 2003.1.1.3 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › adh_short 0.55 47.0 3.78e-01 95.4% 67.6%
4140818 7528.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.55 47.0 4.31e-01 93.1% 94.3%
4091052 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.55 44.0 3.87e-01 87.7% 82.4%
3636901 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.55 46.0 3.92e-01 92.3% 87.7%
4012215 7528.1.1.0 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains 0.55 45.0 4.09e-01 88.5% 86.9%
3740220 2003.1.5.84 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › DRE2_N 0.55 42.0 4.50e-01 82.3% 100.0%
3724886 7579.1.1.36 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Abhydrolase_3 0.54 45.0 3.44e-01 92.3% 65.5%
4573283 7512.1.1.64 ↗ a/b three-layered sandwiches › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › UDP-Glycosyltransferase/glycogen phosphorylase › Glyco_transf_56 0.54 44.0 3.88e-01 89.2% 81.4%
3941353 7528.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.54 46.0 4.34e-01 92.3% 95.5%
4969122 2007.1.14.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Chelatase-like 0.54 43.0 3.88e-01 85.4% 88.3%
3599387 2003.1.5.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases 0.54 42.0 3.45e-01 84.6% 66.1%
3415335 2007.1.2.0 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I 0.54 42.0 3.99e-01 83.8% 76.8%
5040508 2003.1.5.55 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › PrmA 0.54 42.0 3.72e-01 84.6% 77.4%
3511640 7528.1.1.1 ↗ a/b three-layered sandwiches › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › Phosphoglucomutase, first 3 domains › PGM_PMM_I 0.53 46.0 4.08e-01 93.1% 96.8%
3955236 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.53 42.0 3.40e-01 86.2% 68.9%
5024280 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.53 42.0 3.70e-01 86.9% 77.0%
4992093 2006.1.1.43 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_PNKP 0.53 40.0 3.84e-01 80.0% 76.7%
4931291 2003.1.5.46 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › MTS 0.52 42.0 3.64e-01 86.2% 75.5%
4028870 2003.1.5.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › RrnaAD 0.52 46.0 3.73e-01 98.5% 99.2%
3038798 2002.1.1.91 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Dehydratase_LU 0.51 46.0 3.03e-01 99.2% 89.0%
D5 medium residues 342-435
PDB
Domain cluster: representative
CATH (6)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1h3dA03 3.30.70.120 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 35.0 3.93e-01 83.0% 94.0%
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.53 40.0 4.27e-01 96.8% 97.5%
2mq8A00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.52 42.0 4.04e-01 90.4% 90.2%
3gmgA00 3.30.70.1880 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Protein of unknown function DUF881 0.51 41.0 3.58e-01 88.3% 74.8%
4illB01 2.40.30.310 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.50 41.0 3.89e-01 90.4% 96.6%
1b35C00 2.60.120.20 Mainly Beta › Sandwich › Jelly Rolls › 0.50 43.0 3.13e-01 96.8% 48.2%
ECOD (16)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
2756661 887.1.1.1 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.66 45.0 4.18e-01 90.4% 54.1%
4347806 887.1.1.1 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.66 42.0 5.02e-01 84.0% 100.0%
4074028 887.1.1.1 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.66 43.0 5.05e-01 87.2% 96.9%
4251588 887.1.1.1 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.66 42.0 4.97e-01 86.2% 96.8%
4119217 887.1.1.1 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.65 43.0 4.99e-01 87.2% 98.4%
3581515 887.1.1.0 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.64 44.0 4.13e-01 89.4% 56.8%
3080544 887.1.1.1 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal_L30 0.64 42.0 4.16e-01 86.2% 62.0%
3712193 887.1.1.0 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.60 43.0 4.35e-01 92.6% 74.7%
4934142 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 52.0 4.32e-01 100.0% 54.1%
3701464 887.1.1.0 ↗ a+b two layers › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e › Ribosomal protein L30p/L7e 0.59 43.0 3.66e-01 93.6% 46.5%
4965698 304.22.1.0 ↗ a+b two layers › Alpha-beta plaits › Urease metallochaperone UreE, C-terminal domain › Urease metallochaperone UreE, C-terminal domain 0.57 39.0 4.19e-01 83.0% 83.7%
4638790 305.1.1.1 ↗ a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.55 48.0 4.08e-01 100.0% 58.1%
3279488 304.48.1.48 ↗ a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › GGDEF_2 0.54 42.0 3.57e-01 86.2% 61.8%
3845334 10.1.1.23 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Neuralized 0.53 41.0 3.49e-01 87.2% 75.3%
3208219 304.8.1.0 ↗ a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.53 42.0 3.87e-01 86.2% 90.0%
3694327 2003.1.2.15 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.52 42.0 2.98e-01 88.3% 31.8%
D6 medium residues 436-499
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.76 54.0 3.98e-01 100.0% 30.4%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 60.0 5.44e-01 100.0% 64.4%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.74 61.0 5.27e-01 100.0% 59.4%
1z9fA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 58.0 5.22e-01 100.0% 64.0%
4pofA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.70 62.0 5.30e-01 100.0% 63.5%
3qwnD01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.64 47.0 4.64e-01 100.0% 72.9%
2i46A00 2.40.50.960 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.64 57.0 4.33e-01 100.0% 44.1%
6ro0D00 2.40.50.110 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.63 55.0 4.64e-01 100.0% 63.6%
4gnxC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.63 55.0 3.99e-01 100.0% 42.6%
7zhhA02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.61 45.0 4.52e-01 95.3% 78.8%
2x8xX01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.56 39.0 3.81e-01 76.6% 97.4%
4qkyA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 37.0 3.53e-01 70.3% 98.6%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.54 36.0 3.42e-01 70.3% 95.1%
1k9fA01 3.30.379.10 Alpha Beta › 2-Layer Sandwich › Chitobiase; domain 2 › Chitobiase/beta-hexosaminidase domain 2-like 0.51 37.0 3.12e-01 82.8% 83.2%
2clsA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 36.0 2.68e-01 76.6% 92.7%
4c0kA02 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.50 40.0 2.97e-01 95.3% 90.9%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4120870 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.80 63.0 5.20e-01 100.0% 49.1%
3386820 2.1.1.85 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecJ_OB 0.80 59.0 4.90e-01 96.9% 46.3%
4600925 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.79 64.0 5.52e-01 100.0% 57.9%
4309540 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.79 64.0 5.32e-01 100.0% 52.4%
4240090 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.77 61.0 5.25e-01 100.0% 55.0%
3356732 2.1.1.67 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ten1_2 0.77 57.0 4.63e-01 100.0% 42.5%
5081145 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.75 58.0 5.16e-01 100.0% 58.9%
4188423 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.75 61.0 4.83e-01 100.0% 44.8%
3320129 2.1.1.80 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › MCM_OB 0.75 64.0 6.45e-01 100.0% 93.8%
5062589 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.71 57.0 4.47e-01 100.0% 43.1%
5035746 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.68 62.0 4.58e-01 100.0% 47.1%
3700345 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.63 55.0 4.68e-01 100.0% 68.2%
5057050 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.60 40.0 3.35e-01 100.0% 36.0%
None — 0.57 41.0 2.69e-01 76.6% 85.7%
2671869 2004.1.1.54 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.56 39.0 2.64e-01 73.4% 88.3%
3500833 2004.1.1.54 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.56 39.0 2.58e-01 73.4% 85.9%
3786181 2004.1.1.54 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.56 39.0 2.56e-01 73.4% 84.4%
3783003 2004.1.1.54 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.55 40.0 2.61e-01 79.7% 87.0%
5061264 4312.1.1.0 ↗ a+b two layers › RelE-like › RelE-like › RelE-like 0.54 46.0 4.35e-01 96.9% 100.0%
3507568 207.1.1.218 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › PF27086 0.51 37.0 2.83e-01 79.7% 36.4%
3866115 325.1.8.4 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Ribosomal L27 protein › RRP40_N_mamm 0.50 41.0 3.72e-01 93.8% 73.3%
D7 medium residues 515-543_767-869
PDB
Domain cluster: rep: NC_048735.1__YP_009841833.1__HWB91_gp45__00045__D564-633_815-924
CATH (4)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jndA01 1.10.1740.220 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › 0.62 38.0 3.87e-01 92.4% 61.5%
3hd6A00 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.59 44.0 3.12e-01 76.5% 92.1%
7uzqK01 1.10.3430.10 Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains 0.59 43.0 3.16e-01 76.5% 93.6%
2j0wA02 1.20.120.1320 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain 0.54 35.0 4.06e-01 89.4% 92.5%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4940788 148.1.3.0 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.95 63.0 7.77e-01 74.2% 100.0%
3547168 148.1.3.17 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.69 47.0 4.71e-01 96.2% 68.1%
5029473 148.1.3.17 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › MCM_lid 0.66 47.0 5.25e-01 97.0% 92.4%
3282054 148.1.3.236 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › PF31033 0.63 42.0 4.17e-01 71.2% 62.9%
3198602 148.1.3.212 ↗ alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_13 0.62 45.0 4.82e-01 76.5% 91.3%
D8 medium residues 544-766
PDB
Domain cluster: rep: NC_048735.1__YP_009841833.1__HWB91_gp45__00045__D634-814
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF00493.30 best MCM 30.5 2.80e-07 75.8% 58.0%