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MW355480.1__QQO89488.1__NFNIDDED_00001__00001

Bact-Vir

MW355480.1__QQO89488.1__NFNIDDED_00001__00001

Identity

Accession:
MW355480 ↗
Kingdom:
phage

Quality

69.5 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 74-119
PDB
D2 high residues 131-185
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF04448.18 best DUF551 43.6 6.30e-11 100.0% 88.2%
CATH (62)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2lccA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 56.0 5.05e-01 83.6% 76.3%
3bbaA00 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.69 59.0 3.92e-01 100.0% 36.2%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.67 56.0 5.06e-01 96.4% 83.1%
2fhdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.66 49.0 4.74e-01 81.8% 93.5%
3m9qA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 54.0 4.98e-01 94.5% 95.8%
4bi3A01 3.90.1720.80 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.61 52.0 4.52e-01 100.0% 65.9%
7byjA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.61 43.0 3.66e-01 76.4% 86.3%
1plsA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.60 44.0 3.64e-01 83.6% 69.9%
5e6tA02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.60 50.0 4.30e-01 100.0% 98.9%
3hk0B02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.46e-01 85.5% 77.4%
4qv2A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.59 49.0 3.99e-01 100.0% 92.4%
2dhkA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.70e-01 83.6% 77.0%
1wgqA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 44.0 3.60e-01 83.6% 77.1%
3fgbA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.58 42.0 2.59e-01 78.2% 99.4%
4innA00 2.40.128.520 Mainly Beta › Beta Barrel › Lipocalin › 0.58 44.0 3.35e-01 85.5% 61.0%
4a6fA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 42.0 3.59e-01 83.6% 82.9%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.58 49.0 3.48e-01 100.0% 48.9%
2kigA00 2.30.29.110 Mainly Beta › Roll › PH-domain like › 0.58 42.0 3.10e-01 80.0% 62.7%
1maiA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.58 45.0 3.57e-01 87.3% 84.9%
1ylnA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 46.0 3.74e-01 94.5% 64.0%
3fm2A00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.57 46.0 3.58e-01 94.5% 72.2%
1v61A00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 42.0 3.32e-01 85.5% 62.1%
4chjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 43.0 3.54e-01 92.7% 75.0%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 48.0 3.99e-01 100.0% 97.1%
2hhzA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.56 44.0 3.33e-01 87.3% 44.2%
3cpxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.56 45.0 4.46e-01 100.0% 100.0%
2hqvA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.56 45.0 3.31e-01 94.5% 56.4%
3v76A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.56 43.0 3.76e-01 89.1% 61.1%
2kdoA01 3.30.1250.10 Alpha Beta › 2-Layer Sandwich › Hypothetical 12.0 Kda Protein In Nam8-gar1 Intergenic Region; Chain: A; › Ribosome maturation protein SBDS, N-terminal domain 0.55 39.0 3.38e-01 78.2% 88.9%
2eixA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 46.0 3.85e-01 100.0% 87.7%
2xzlA02 2.40.30.230 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 46.0 4.18e-01 100.0% 98.7%
2kcjA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.55 39.0 3.35e-01 83.6% 75.9%
3h7oA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 39.0 3.16e-01 78.2% 41.1%
3otpA01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 45.0 3.18e-01 100.0% 70.4%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 45.0 4.11e-01 100.0% 93.7%
5chtB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.54 45.0 2.91e-01 100.0% 30.3%
2o8lA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 39.0 3.33e-01 81.8% 50.5%
5hmaA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 3.73e-01 98.2% 65.4%
2dpyA00 3.40.50.12240 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.54 44.0 2.73e-01 100.0% 16.8%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.54 44.0 4.31e-01 100.0% 84.4%
1dleB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 44.0 3.36e-01 96.4% 79.6%
5tr9A01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.54 45.0 3.88e-01 100.0% 93.8%
1havB02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.54 42.0 3.56e-01 92.7% 75.7%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 38.0 3.25e-01 76.4% 53.3%
1yudA01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.53 43.0 3.22e-01 94.5% 61.3%
3u5wA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 3.26e-01 87.3% 43.7%
4ic5A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 43.0 3.67e-01 100.0% 66.3%
2ok5A02 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 44.0 3.06e-01 100.0% 88.1%
2d7eA01 3.40.1440.60 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › PriA, 3(prime) DNA-binding domain 0.53 41.0 3.59e-01 98.2% 54.4%
2w5eA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.53 39.0 3.60e-01 85.5% 60.8%
2ia1A01 3.30.500.20 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › BH3703-like domains 0.53 37.0 2.99e-01 76.4% 92.4%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 42.0 2.93e-01 90.9% 35.5%
3i3tA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 45.0 2.84e-01 100.0% 22.8%
4hs5A00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.52 39.0 3.20e-01 81.8% 79.0%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.52 42.0 3.13e-01 90.9% 47.4%
1qmyA00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.52 42.0 3.19e-01 100.0% 41.0%
2hq9B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 3.20e-01 90.9% 42.3%
2gpjA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.51 41.0 3.56e-01 100.0% 97.0%
1boqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 42.0 3.53e-01 100.0% 58.9%
2htiA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 39.0 3.16e-01 92.7% 53.2%
3tk9A02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 36.0 3.01e-01 78.2% 41.1%
2bhgA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.50 39.0 3.42e-01 98.2% 65.7%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5034832 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 57.0 5.34e-01 87.3% 97.1%
4574546 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.72 58.0 5.57e-01 90.9% 96.9%
4183853 4.1.1.435 beta barrels › SH3 › SH3 › SH3 › PF29216 0.72 59.0 5.53e-01 94.5% 100.0%
5016546 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 59.0 5.33e-01 96.4% 97.3%
4023246 6.1.1.0 beta duplicates or obligate multimers › beta-Trefoil › beta-Trefoil › beta-Trefoil 0.66 58.0 4.18e-01 100.0% 96.9%
3999725 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 54.0 4.71e-01 90.9% 63.5%
3347795 4.1.1.94 beta barrels › SH3 › SH3 › SH3 › SAWADEE 0.65 56.0 5.04e-01 100.0% 86.3%
3781440 4.1.1.51 beta barrels › SH3 › SH3 › SH3 › SGF29_Tudor 0.65 56.0 5.00e-01 100.0% 91.3%
3246086 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 55.0 4.71e-01 100.0% 66.3%
423593 219.1.1.59 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Agglutinin_C 0.64 52.0 3.96e-01 96.4% 82.8%
3206868 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 55.0 4.16e-01 100.0% 62.2%
4958339 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.63 53.0 4.36e-01 100.0% 68.2%
3482603 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.63 44.0 3.77e-01 78.2% 86.0%
3226827 4.1.1.133 beta barrels › SH3 › SH3 › SH3 › SMN_YG-box 0.63 55.0 4.45e-01 100.0% 60.0%
4959592 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.62 46.0 3.50e-01 81.8% 82.1%
3756645 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.62 45.0 3.55e-01 81.8% 73.8%
3995153 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.62 45.0 3.76e-01 81.8% 78.1%
4634055 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.61 44.0 3.13e-01 80.0% 71.6%
4980573 219.1.1.0 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.61 44.0 3.10e-01 78.2% 34.7%
3625263 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 48.0 4.00e-01 89.1% 69.0%
3916753 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 43.0 3.19e-01 78.2% 53.1%
925 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 44.0 3.64e-01 83.6% 69.9%
4213984 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.60 44.0 3.16e-01 80.0% 68.0%
3529782 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.60 45.0 3.61e-01 83.6% 67.0%
3932851 220.1.1.46 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_14 0.60 44.0 3.60e-01 85.5% 82.5%
3218545 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.60 52.0 4.53e-01 100.0% 95.3%
3774692 4.1.1.31 beta barrels › SH3 › SH3 › SH3 › Spin-Ssty 0.59 50.0 4.51e-01 100.0% 87.5%
5031647 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.59 50.0 4.69e-01 96.4% 90.0%
4379249 1.1.5.25 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › PilZ 0.59 45.0 3.53e-01 83.6% 53.6%
3236689 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 52.0 5.24e-01 100.0% 100.0%
3256920 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.58 50.0 3.92e-01 100.0% 80.0%
3570691 220.1.1.208 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF28207 0.58 42.0 3.54e-01 83.6% 70.0%
3777243 220.1.1.161 beta barrels › PH domain-like › PH domain-like › PH domain-like › PF26659 0.58 41.0 3.25e-01 80.0% 60.0%
4191831 220.1.1.217 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH, GRAM 0.58 43.0 2.87e-01 85.5% 30.9%
5064007 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.58 43.0 3.14e-01 85.5% 32.8%
1790393 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 48.0 4.36e-01 100.0% 84.1%
3869235 2007.5.1.21 a/b three-layered sandwiches › Flavodoxin-like › SGNH hydrolase › SGNH hydrolase › NXPE4_C 0.57 41.0 2.60e-01 78.2% 19.1%
3555467 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.57 49.0 3.93e-01 100.0% 88.7%
4021637 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 49.0 3.80e-01 100.0% 90.8%
4993029 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.57 49.0 3.63e-01 100.0% 92.0%
3967745 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.57 47.0 4.36e-01 100.0% 94.7%
4319764 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.56 48.0 3.93e-01 100.0% 62.7%
4942072 219.1.1.13 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Transglut_core 0.56 46.0 3.35e-01 96.4% 89.4%
3476139 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.56 40.0 3.35e-01 81.8% 65.2%
3405824 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 47.0 3.78e-01 100.0% 85.8%
3951474 1.1.5.9 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx,PNP_phzG_C 0.56 46.0 3.12e-01 92.7% 38.8%
5047862 1.1.5.8 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.56 43.0 3.20e-01 85.5% 38.5%
4944288 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 45.0 3.70e-01 92.7% 89.5%
3423906 4.25.1.1 beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › Auxin_resp 0.55 44.0 4.17e-01 92.7% 100.0%
5008350 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 45.0 4.10e-01 100.0% 86.3%
4010630 2004.1.1.10 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › ATP-synt_ab 0.55 45.0 2.77e-01 100.0% 15.8%
5011387 375.1.1.213 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Zn_ribbon_TiaS 0.54 35.0 3.81e-01 98.2% 84.4%
3901117 4.8.1.6 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Tudor-knot 0.54 40.0 3.00e-01 90.9% 30.6%
4029745 219.1.1.112 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH, UCH_1 0.53 46.0 2.85e-01 100.0% 32.1%
3270836 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 37.0 3.14e-01 81.8% 68.7%
5029334 219.1.1.76 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › DUF553 0.51 45.0 3.21e-01 100.0% 93.5%
4402757 1137.1.1.0 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain 0.51 42.0 3.27e-01 100.0% 46.8%
4024708 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.51 43.0 2.66e-01 100.0% 21.1%
3952469 3794.1.1.2 a+b two layers › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Methylcrotonyl-CoA carboxylase alpha-subunit BT domain-related › Barrel domain in methylcrotonyl-CoA carboxylase alpha-subunit › MCC_alpha_BT 0.51 40.0 3.18e-01 94.5% 46.9%
4028543 929.1.1.0 beta duplicates or obligate multimers › Resistin › Resistin › Resistin 0.50 44.0 3.99e-01 100.0% 78.7%
4195041 4090.1.1.1 a+b two layers › BH3703-like › BH3703-like › BH3703-like › YezG-like 0.50 34.0 2.64e-01 74.5% 74.7%