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MW358927.1__QQK88051.1__X__00017

Bact-Vir

MW358927.1__QQK88051.1__X__00017

Identity

Accession:
MW358927 ↗
Kingdom:
phage

Quality

90.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 18-73
PDB
CATH (46)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2om6A02 1.10.150.400 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 0.84 58.0 5.16e-01 73.2% 51.9%
3fblA00 1.20.58.800 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.80 65.0 5.72e-01 89.3% 74.4%
3c24A02 1.10.3640.10 Mainly Alpha › Orthogonal Bundle › putative oxidoreductase fold › Semialdehyde dehydrogenase-like, C-terminal 0.80 58.0 4.74e-01 76.8% 47.0%
3g2bA00 1.10.10.1150 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Coenzyme PQQ synthesis protein D (PqqD) 0.77 63.0 5.40e-01 92.9% 56.7%
2dodA00 1.10.10.440 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › FF domain 0.76 68.0 5.97e-01 100.0% 73.2%
1zymA02 1.10.274.10 Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › PtsI, HPr-binding domain 0.75 52.0 3.99e-01 73.2% 34.1%
4pxoA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.73 54.0 4.08e-01 78.6% 33.6%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.73 64.0 5.35e-01 100.0% 69.1%
6rxaA01 1.10.40.30 Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase Protein R1; domain 1 › Fumarase/aspartase (C-terminal domain) 0.72 49.0 4.29e-01 75.0% 46.0%
3tl4X02 1.10.10.2420 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › 0.71 57.0 5.37e-01 92.9% 84.7%
4eqqA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.70 51.0 5.35e-01 83.9% 91.7%
2w9zA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.70 62.0 4.70e-01 100.0% 82.0%
2khvA01 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.70 59.0 5.20e-01 96.4% 71.8%
2vk9A03 1.10.3730.30 Mainly Alpha › Orthogonal Bundle › ProC C-terminal domain-like fold › 0.68 54.0 4.51e-01 87.5% 99.0%
6vudA01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.67 56.0 4.49e-01 92.9% 88.1%
1txuA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.67 55.0 4.79e-01 98.2% 79.8%
2keyA00 1.10.150.130 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Tyrosine recombinase, N-terminal domain 0.66 56.0 4.59e-01 100.0% 52.7%
2aamC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 58.0 3.65e-01 98.2% 22.7%
8hbfB01 3.90.1520.10 Alpha Beta › Alpha-Beta Complex › H-NOX domain › H-NOX domain 0.66 56.0 3.99e-01 98.2% 39.2%
4dqlA03 3.40.50.80 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Nucleotide-binding domain of ferredoxin-NADP reductase (FNR) module 0.66 50.0 3.64e-01 83.9% 33.5%
4od8D00 6.10.140.1880 Special › Helix non-globular › Helix Hairpins › 0.65 41.0 4.31e-01 85.7% 70.6%
2go7A02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 56.0 5.34e-01 98.2% 82.1%
3vw7A01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.64 44.0 2.79e-01 71.4% 39.4%
3gagA00 3.40.109.10 Alpha Beta › 3-Layer(aba) Sandwich › NADH Oxidase › NADH Oxidase 0.64 51.0 3.49e-01 89.3% 40.8%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.63 53.0 4.34e-01 98.2% 90.8%
1vw4T01 6.10.330.20 Special › Helix non-globular › Monooxygenase › 0.62 55.0 4.32e-01 98.2% 67.0%
3l9tA01 1.10.1240.70 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.61 45.0 4.10e-01 91.1% 56.6%
2c5iT00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.61 53.0 4.48e-01 98.2% 89.4%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.61 45.0 4.29e-01 87.5% 68.8%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.60 52.0 4.71e-01 100.0% 89.9%
2ebzA02 1.10.167.10 Mainly Alpha › Orthogonal Bundle › Regulator of G-protein Signalling 4; domain 2 › Regulator of G-protein Signalling 4, domain 2 0.60 43.0 3.84e-01 76.8% 71.6%
3llkA02 1.20.120.310 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › ERV/ALR sulfhydryl oxidase domain 0.60 50.0 3.81e-01 98.2% 84.6%
5cofA00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.59 48.0 3.39e-01 89.3% 65.1%
1rykA00 1.10.1470.10 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › YjbJ 0.59 44.0 4.20e-01 85.7% 68.1%
3p0hB02 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.58 50.0 3.19e-01 98.2% 69.0%
1qsdA00 1.20.58.90 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 44.0 3.60e-01 87.5% 45.1%
4bvxA02 1.20.1050.10 Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › 0.57 41.0 3.56e-01 83.9% 70.5%
4nv0A02 1.10.150.340 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Pyrimidine 5'-nucleotidase (UMPH-1), N-terminal domain 0.57 41.0 3.63e-01 78.6% 52.4%
3axjB02 1.20.58.200 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Translin; domain 2 0.56 51.0 4.42e-01 100.0% 83.5%
1rq5A02 1.50.10.10 Mainly Alpha › Alpha/alpha barrel › Glycosyltransferase › 0.56 48.0 2.82e-01 100.0% 18.7%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.55 41.0 3.29e-01 82.1% 40.2%
1ku9A02 1.10.287.450 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix hairpin bin 0.55 46.0 4.39e-01 89.3% 82.8%
3fp3A01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.54 47.0 3.54e-01 98.2% 40.0%
4gpkB01 1.25.40.1000 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › 0.54 49.0 4.01e-01 100.0% 87.9%
6fndA01 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.53 46.0 3.23e-01 98.2% 30.6%
3waeA02 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.52 41.0 3.10e-01 92.9% 47.2%
ECOD (50)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4983680 7064.1.1.0 alpha bundles › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 › Transmembrane domain of VIT1 0.80 68.0 5.02e-01 92.9% 94.9%
4933155 198.1.1.27 alpha arrays › Saposin-like › Saposin-like › Saposin-like › PF27234 0.79 70.0 6.11e-01 100.0% 71.8%
4116078 101.11.1.1 alpha arrays › HTH › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › Polynucleotide phosphorylase/guanosine pentaphosphate synthase (PNPase/GPSI), domain 3 › PNPase 0.79 70.0 6.35e-01 100.0% 93.3%
5070623 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.78 62.0 6.50e-01 100.0% 98.0%
4960839 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.77 65.0 5.37e-01 94.6% 60.0%
3341091 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.76 63.0 6.00e-01 92.9% 78.5%
5003639 2.21.1.0 beta barrels › OB-fold › Small protein B (SmpB) › Small protein B (SmpB) 0.76 64.0 4.70e-01 96.4% 38.1%
3216679 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.76 66.0 6.07e-01 100.0% 76.0%
4088578 101.35.1.0 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX 0.76 64.0 6.18e-01 96.4% 93.8%
3312794 101.1.3.22 alpha arrays › HTH › HTH › tetra-helical, LuxR-like › A_thal_3526 0.75 64.0 5.77e-01 94.6% 69.3%
3813940 101.35.1.6 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › A_thal_3526 0.75 63.0 6.02e-01 96.4% 80.0%
3310491 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.75 58.0 5.69e-01 83.9% 78.3%
10305 7516.1.1.25 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › TcdA_TcdB 0.75 57.0 3.34e-01 82.1% 29.3%
4363995 195.1.1.1 alpha complex topology › NusB-like › NusB-like › NusB-like › NusB 0.74 63.0 4.74e-01 100.0% 39.3%
3321732 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.73 60.0 4.95e-01 91.1% 53.0%
4230575 3355.1.1.16 alpha complex topology › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › dicarboxylate/sodium symporter › DcuC 0.72 61.0 3.64e-01 100.0% 17.6%
3730715 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.71 56.0 5.65e-01 89.3% 89.1%
4945647 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.71 58.0 4.85e-01 92.9% 55.0%
4946659 101.1.10.0 alpha arrays › HTH › HTH › Cyclin-like 0.71 60.0 4.88e-01 98.2% 50.9%
5032425 5060.2.1.1 alpha bundles › V-type ATP synthase subunit C › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › Toxin coregulated pilus biosynthesis protein E cytoplasmic domain › T2SSF 0.71 50.0 3.94e-01 75.0% 95.7%
5053497 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.70 57.0 5.63e-01 91.1% 86.7%
3807250 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.70 60.0 5.95e-01 98.2% 100.0%
4940562 179.1.1.0 alpha bundles › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like › CO dehydrogenase ISP C-domain like 0.70 56.0 5.51e-01 89.3% 90.0%
3806223 101.1.1.434 alpha arrays › HTH › HTH › Three-helical HTH › Cupin_1 0.70 53.0 4.62e-01 87.5% 54.1%
3691750 376.1.1.8 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › U-box 0.70 48.0 3.51e-01 83.9% 26.8%
4976919 7014.1.1.1 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA 0.69 59.0 4.96e-01 100.0% 60.0%
4954986 5065.1.1.3 alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 0.69 62.0 3.82e-01 100.0% 93.2%
3794794 7516.1.1.51 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_transf_21 0.69 59.0 3.86e-01 100.0% 70.9%
3963650 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.68 52.0 5.40e-01 91.1% 100.0%
3626769 192.5.1.14 alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat › HR1_TOCA 0.68 51.0 4.32e-01 87.5% 50.0%
3700101 3009.1.1.0 alpha arrays › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like › Insertion subdomain in DsbA-like 0.67 58.0 5.23e-01 100.0% 77.5%
3963136 3317.1.1.0 alpha arrays › KorB C-terminal domain-like › KorB C-terminal domain › KorB C-terminal domain 0.66 53.0 4.05e-01 92.9% 64.3%
4928737 592.2.1.0 alpha arrays › PWI domain-like › YugE-like › YugE-like 0.66 56.0 4.74e-01 96.4% 82.1%
3897431 101.1.2.24 alpha arrays › HTH › HTH › winged helix domain › MAGE 0.66 55.0 4.21e-01 96.4% 58.5%
3967801 2006.1.3.16 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › Toprim domain › DUF1835 0.65 56.0 3.92e-01 100.0% 39.5%
4513921 101.7.1.1 alpha arrays › HTH › DEK-C › DEK-C › DEK_C 0.64 51.0 5.00e-01 89.3% 93.3%
5056132 3110.1.1.0 a/b three-layered sandwiches › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain › STT3/PglB/AglB core domain 0.64 52.0 3.99e-01 91.1% 45.9%
3589830 5043.2.1.8 extended segments › Sensor proteins transmembrane domains › NarQ transmembrane domain › NarQ transmembrane domain › DUF5592 0.63 45.0 4.24e-01 76.8% 74.3%
3744631 632.2.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Bacterial immunoglobulin/albumin-binding domains › Bacterial immunoglobulin/albumin-binding domains 0.63 43.0 4.00e-01 71.4% 75.7%
3271267 568.1.1.0 few secondary structure elements › p8-MTCP1-related › p8-MTCP1-related › p8-MTCP1-related 0.63 41.0 4.02e-01 71.4% 61.7%
5034422 198.1.1.0 alpha arrays › Saposin-like › Saposin-like › Saposin-like 0.63 47.0 4.80e-01 83.9% 96.4%
1169399 101.35.1.2 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › Lipoprotein_Ltp 0.63 47.0 4.87e-01 89.3% 92.3%
3978755 7516.1.1.2 a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glycos_transf_2 0.62 53.0 3.53e-01 100.0% 44.4%
5058906 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 50.0 4.61e-01 96.4% 98.8%
159607 603.1.1.5 alpha bundles › STAT-like › t-snare proteins › t-snare proteins › Syntaxin-6_N 0.61 53.0 4.48e-01 98.2% 89.4%
3526522 101.1.1.50 alpha arrays › HTH › HTH › Three-helical HTH › Nop16 0.59 48.0 4.55e-01 91.1% 75.0%
4928626 2003.1.1.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains 0.58 45.0 2.91e-01 87.5% 90.4%
1124142 3788.1.1.1 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › VPR 0.55 39.0 3.39e-01 76.8% 46.9%
144301 5041.1.1.1 extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C 0.51 41.0 3.76e-01 87.5% 79.5%
4967169 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.50 44.0 3.61e-01 100.0% 73.3%