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MW358929.1__QQK88352.1__X__00008

Bact-Vir

MW358929.1__QQK88352.1__X__00008

Identity

Accession:
MW358929 ↗
Kingdom:
phage

Quality

85.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 37-111
PDB
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF05521.19 best Phage_HCP 26.1 1.50e-05 94.7% 59.4%
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6toaE01 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.82 67.0 6.07e-01 86.7% 73.5%
2pp6A02 2.40.10.210 Mainly Beta › Beta Barrel › Thrombin, subunit H › Phage tail proteins (gpFII-like) 0.78 56.0 6.11e-01 92.0% 88.9%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.73 42.0 4.51e-01 94.7% 66.2%
3gs9A01 6.20.110.10 Special › Other non-globular › Thrombin, subunit H › 0.72 58.0 5.70e-01 89.3% 82.3%
3f3bA00 2.40.10.370 Mainly Beta › Beta Barrel › Thrombin, subunit H › Protein of unknown function DUF3599 0.71 62.0 5.32e-01 94.7% 62.6%
4z85A00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.69 62.0 4.50e-01 98.7% 56.3%
3bp6B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.67 51.0 4.90e-01 92.0% 70.5%
2psoB02 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.64 55.0 4.18e-01 96.0% 79.8%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.64 35.0 3.21e-01 93.3% 40.8%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.63 53.0 4.76e-01 94.7% 67.9%
2p4bB02 3.30.200.100 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › MucB/RseB, C-terminal domain 0.63 46.0 4.22e-01 90.7% 59.2%
2nn5A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 53.0 4.03e-01 94.7% 67.3%
8dwoJ01 2.60.40.350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.61 47.0 4.50e-01 93.3% 71.6%
4jvuA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 51.0 4.53e-01 96.0% 76.4%
4f80A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 49.0 4.65e-01 94.7% 74.2%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.60 54.0 4.55e-01 100.0% 82.4%
2x8kA01 2.40.30.200 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.60 53.0 4.73e-01 98.7% 85.7%
2p4pA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.60 43.0 4.17e-01 76.0% 95.2%
5hesA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.60 44.0 4.35e-01 89.3% 72.8%
1yoaA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 51.0 4.11e-01 100.0% 70.4%
2p13A00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 48.0 4.60e-01 88.0% 96.5%
3fbqA02 2.60.40.1640 Mainly Beta › Sandwich › Immunoglobulin-like › Conserved domain protein. 0.59 50.0 4.07e-01 93.3% 53.2%
2oaiA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 47.0 4.67e-01 89.3% 97.5%
2fbjH02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.59 47.0 4.78e-01 90.7% 91.8%
3hr6A02 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 49.0 3.89e-01 93.3% 74.5%
2iteA00 2.60.40.1850 Mainly Beta › Sandwich › Immunoglobulin-like › 0.58 46.0 3.98e-01 92.0% 54.5%
3laeA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 47.0 4.65e-01 89.3% 100.0%
2pliA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.58 46.0 4.46e-01 88.0% 97.6%
3mxqC00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 42.0 3.63e-01 80.0% 89.6%
2w59A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 46.0 4.27e-01 90.7% 70.0%
2mklC00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 46.0 4.16e-01 92.0% 66.7%
2nqwA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 45.0 4.33e-01 90.7% 100.0%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.55 45.0 3.38e-01 90.7% 39.7%
5oj2B02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 45.0 4.25e-01 94.7% 75.0%
2p3hA00 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.55 44.0 4.03e-01 88.0% 99.0%
2m47A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 40.0 3.12e-01 78.7% 81.6%
3qooA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.54 38.0 3.26e-01 76.0% 86.6%
2l8kA00 3.30.1330.220 Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Arterivirus nonstructural protein 7 alpha 0.54 47.0 4.04e-01 98.7% 77.2%
5g5tA02 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.54 41.0 3.14e-01 86.7% 41.7%
4p02A03 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.53 45.0 3.93e-01 98.7% 73.8%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.97e-01 94.7% 75.6%
1zboA01 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.52 45.0 3.98e-01 100.0% 79.6%
3c8cB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 41.0 3.52e-01 89.3% 66.9%
1adqA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.82e-01 90.7% 72.0%
3lidA03 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.52 40.0 3.77e-01 86.7% 95.8%
2aneH00 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.51 44.0 3.96e-01 100.0% 81.7%
5n9bA01 2.60.40.2160 Mainly Beta › Sandwich › Immunoglobulin-like › Interleukin-17 receptor A/B, fibronectin-III-like domain 1 0.51 41.0 3.49e-01 92.0% 52.6%
1c8uA01 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 43.0 3.47e-01 98.7% 80.8%
ECOD (58)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4260208 1.1.13.62 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.81 70.0 6.11e-01 90.7% 100.0%
4995815 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.74 67.0 5.54e-01 97.3% 80.8%
4669352 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.73 65.0 5.63e-01 96.0% 64.5%
185291 1.1.13.20 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Prophage_tailD1 0.72 59.0 5.79e-01 90.7% 82.5%
3058418 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.71 61.0 5.48e-01 92.0% 70.6%
3975275 1.1.13.15 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gifsy-2 0.71 59.0 5.41e-01 94.7% 69.5%
4487049 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.71 55.0 4.09e-01 94.7% 34.9%
169594 1.1.13.14 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF3599 0.71 62.0 5.32e-01 94.7% 62.6%
3258439 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.71 53.0 4.92e-01 93.3% 63.2%
4092486 1.1.17.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 0.70 55.0 4.05e-01 94.7% 34.4%
3946118 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.68 57.0 5.79e-01 90.7% 100.0%
3249410 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.67 49.0 5.11e-01 93.3% 85.5%
3511361 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.67 55.0 5.69e-01 90.7% 100.0%
2774000 881.4.1.1 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C 0.65 50.0 4.55e-01 94.7% 61.2%
3305653 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.64 49.0 5.05e-01 90.7% 87.1%
3275824 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.64 56.0 5.13e-01 97.3% 77.0%
4328622 1.1.7.9 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › tRNA-synt_2c 0.64 54.0 4.70e-01 93.3% 64.3%
3165921 881.4.1.1 a+b three layers › Mog1p/PsbP-like › C-terminal domain in sigma-E factor regulatory protein rseB › C-terminal domain in sigma-E factor regulatory protein rseB › MucB_RseB_C 0.62 45.0 4.18e-01 90.7% 60.0%
3277508 11.1.1.793 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7743 0.62 51.0 4.66e-01 94.7% 67.0%
4047545 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.62 49.0 3.91e-01 86.7% 55.5%
4059476 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 52.0 4.41e-01 93.3% 56.7%
4633844 223.1.1.72 a+b three layers › Profilin-like › sensor domains › sensor domains › GAPES2 0.62 50.0 3.54e-01 89.3% 46.8%
4154363 1.1.12.1 beta barrels › cradle loop barrel › RIFT-related › barrel domain in QueA-like proteins › Queuosine_synth 0.61 51.0 4.33e-01 94.7% 54.6%
3250792 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 47.0 5.04e-01 94.7% 98.5%
3883916 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 50.0 4.34e-01 92.0% 65.2%
3256333 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 52.0 4.66e-01 98.7% 78.1%
3576362 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 49.0 4.50e-01 93.3% 68.0%
3268578 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 50.0 4.50e-01 97.3% 78.2%
3267681 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 52.0 4.60e-01 98.7% 69.1%
3430917 881.1.1.2 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.59 51.0 3.77e-01 96.0% 61.5%
4961832 217.2.1.1 a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.59 45.0 4.49e-01 84.0% 98.8%
3544974 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.59 50.0 4.43e-01 94.7% 68.2%
5056494 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.59 49.0 4.24e-01 93.3% 80.8%
4952370 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.58 48.0 3.76e-01 89.3% 60.0%
3252422 881.1.1.2 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1 0.58 48.0 3.64e-01 93.3% 62.6%
3264437 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 49.0 4.48e-01 97.3% 71.4%
3506226 304.55.2.0 a+b two layers › Alpha-beta plaits › Origin of replication-binding domains › Transposase IS200-like 0.58 38.0 3.37e-01 100.0% 45.5%
3251462 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 50.0 4.58e-01 97.3% 74.0%
4054495 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.58 48.0 4.45e-01 94.7% 77.0%
3725599 11.1.1.233 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_mannosidase 0.58 48.0 4.37e-01 92.0% 69.0%
3249204 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 49.0 4.54e-01 96.0% 77.9%
4034115 217.2.1.1 a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.57 44.0 4.30e-01 82.7% 100.0%
4032997 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 50.0 4.19e-01 97.3% 60.8%
3263516 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 48.0 4.32e-01 97.3% 74.3%
3873184 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 47.0 4.60e-01 92.0% 86.3%
1299687 11.1.1.96 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C1-set 0.56 46.0 4.16e-01 92.0% 66.7%
3289002 206.1.1.20 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › PK_Tyr_Ser-Thr 0.55 50.0 3.21e-01 100.0% 46.8%
4944566 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.55 42.0 3.73e-01 85.3% 84.3%
256418 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.55 45.0 3.95e-01 93.3% 66.1%
4241370 217.2.1.1 a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.54 43.0 4.27e-01 88.0% 97.5%
3387904 217.2.1.1 a+b complex topology › FAD-binding domain-like › CorC/HlyC domain-like › CorC/HlyC domain-like › CorC_HlyC 0.54 43.0 4.23e-01 86.7% 100.0%
3243030 11.1.1.178 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Ig_2 0.54 43.0 3.99e-01 90.7% 72.0%
4295277 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.53 42.0 3.42e-01 88.0% 47.3%
4110501 207.11.1.1 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Urease accessory protein ureH › Urease accessory protein ureH › UreD 0.53 45.0 3.12e-01 96.0% 57.7%
3935807 10.32.1.258 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › GBD_IRG7_N 0.52 40.0 3.74e-01 97.3% 67.8%
3283899 2484.1.1.148 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_5 0.51 38.0 2.55e-01 82.7% 64.9%
4346913 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.51 44.0 3.53e-01 98.7% 91.0%
5073525 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.51 39.0 3.38e-01 85.3% 76.8%