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MW367417.1__QQG33325.1__X__00019

Bact-Vir

MW367417.1__QQG33325.1__X__00019

Identity

Accession:
MW367417 ↗
Kingdom:
phage

Quality

55.9 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-112
PDB
D2 medium residues 218-292
PDB
Domain cluster: representative
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3q2eA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.70 59.0 5.29e-01 93.3% 78.5%
4pklA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.70 62.0 5.46e-01 98.7% 80.0%
6kmjA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.70 62.0 5.43e-01 100.0% 82.1%
5ko4A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.70 60.0 5.46e-01 96.0% 80.2%
6cw0A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.69 59.0 5.33e-01 96.0% 82.7%
5n13A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.69 61.0 5.37e-01 97.3% 83.3%
5n17A01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.69 60.0 5.36e-01 96.0% 82.7%
3fy6A01 3.30.2210.10 Alpha Beta › 2-Layer Sandwich › Integron cassette protein fold › Integron cassette protein superfamily 0.68 55.0 4.87e-01 86.7% 100.0%
4qnsA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.68 60.0 5.36e-01 100.0% 83.0%
5uiyA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.68 60.0 5.31e-01 98.7% 79.4%
2efeA01 1.10.246.120 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.66 41.0 4.07e-01 70.7% 59.3%
2datA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.65 56.0 4.82e-01 97.3% 74.8%
2xgcA02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.65 49.0 4.08e-01 80.0% 96.9%
4n4gA01 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.64 56.0 4.96e-01 98.7% 67.6%
3kb9A00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.59 50.0 3.28e-01 96.0% 21.5%
3dd7C00 1.20.120.1870 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Fic/DOC protein, Fido domain 0.57 46.0 3.89e-01 86.7% 76.2%
1hm7B00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.56 48.0 3.25e-01 97.3% 23.9%
2g3bA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 46.0 3.40e-01 88.0% 92.0%
4b8cJ01 3.80.10.10 Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor 0.56 43.0 3.28e-01 88.0% 94.0%
2g80A02 1.10.720.60 Mainly Alpha › Orthogonal Bundle › Transcription Termination Factor Rho, Rna-binding Domain; Chain A, Domain 1 › 0.55 40.0 4.03e-01 78.7% 83.3%
1jfaB00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 45.0 2.98e-01 100.0% 59.4%
3vokA00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 45.0 3.45e-01 97.3% 82.4%
ECOD (28)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3850399 3788.1.1.13 alpha bundles › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › Viral accessory protein x (Vpx) / viral protein r (Vpr) › DMAP_binding 0.73 54.0 5.12e-01 84.0% 64.4%
3755193 4146.1.1.7 alpha bundles › YqgQ-like › YqgQ-like › YqgQ-like › DMAP_binding 0.72 53.0 5.21e-01 82.7% 71.2%
3781733 633.1.1.1 alpha bundles › Bromodomain-like › Bromodomain › Bromodomain › Bromodomain 0.69 62.0 5.24e-01 100.0% 70.4%
4423918 5045.1.1.1 alpha bundles › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › F1F0 ATP synthase subunit A › ATP-synt_A 0.68 58.0 4.09e-01 97.3% 55.6%
5003459 101.1.2.19 alpha arrays › HTH › HTH › winged helix domain › Topoisom_bac 0.68 58.0 4.47e-01 100.0% 92.4%
55471 611.5.1.0 alpha bundles › N-cbl like › Superantigen MAM N-terminal domain › Superantigen MAM N-terminal domain 0.66 59.0 5.04e-01 100.0% 69.4%
5037104 601.7.1.0 alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain 0.66 56.0 4.72e-01 93.3% 72.0%
3614319 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.60 49.0 5.10e-01 100.0% 100.0%
3455096 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.60 49.0 3.60e-01 98.7% 31.6%
3940372 2006.1.1.44 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like 0.59 49.0 3.39e-01 93.3% 26.4%
3706915 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.59 46.0 4.78e-01 85.3% 97.1%
3518121 101.1.4.1 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.59 51.0 4.50e-01 98.7% 77.4%
3471028 101.1.4.0 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like 0.59 51.0 4.69e-01 98.7% 90.0%
5073462 141.1.1.0 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases 0.57 49.0 3.29e-01 98.7% 52.0%
3952920 3625.1.1.1 alpha bundles › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › CRISPR RNA silencing complex Cmr2 subunit second helical domain › Cmr2_hel_dom2 0.57 39.0 3.77e-01 81.3% 62.4%
3299470 1117.1.1.1 alpha arrays › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › Enhancer of polycomb-like protein 1 (Epl1) N-terminal domain › EPL1 0.57 38.0 2.84e-01 72.0% 28.3%
3601341 632.7.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain 0.56 45.0 4.61e-01 88.0% 100.0%
3723519 321.1.1.10 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Amidoligase_2 0.56 48.0 3.17e-01 100.0% 83.2%
3770218 101.1.4.1 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › Pou 0.56 45.0 4.12e-01 89.3% 73.8%
4440642 3883.1.1.1 alpha bundles › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-alcohol phosphotransferase helical bundle domain › CDP-OH_P_transf 0.56 48.0 3.68e-01 98.7% 76.8%
3462781 141.1.1.4 alpha bundles › Terpenoid synthases › Terpenoid synthases › Terpenoid synthases › Terpene_synth_C 0.56 48.0 3.23e-01 100.0% 23.7%
3654060 3722.1.1.1 alpha bundles › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › Protein regulator of cytokinesis 1 (PRC1) rod domain › MAP65_ASE1 0.56 47.0 3.44e-01 98.7% 32.3%
3957749 191.1.1.60 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_20 0.56 46.0 3.85e-01 89.3% 76.0%
3895592 601.14.1.1 alpha bundles › Four-helical up-and-down bundle › Hemerythrin › Hemerythrin › Hemerythrin 0.53 45.0 3.63e-01 98.7% 63.1%
3823703 212.1.1.22 a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Topo-VIb_trans 0.53 45.0 3.17e-01 94.7% 32.9%
4602544 138.1.1.9 alpha arrays › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA polymerase III clamp loader subunits, C-terminal domain › DNA_pol3_delta_C 0.53 40.0 3.51e-01 85.3% 75.2%
4430761 3804.1.1.1 alpha bundles › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › CRISPR-Cas system RNase C2c2 N-terminal domain › Cas13a_endoribonuclease 0.52 41.0 3.25e-01 85.3% 52.7%
4934608 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.50 42.0 3.58e-01 98.7% 72.9%
D3 medium residues 330-424
PDB
CATH (24)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2w96A02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.71 50.0 4.71e-01 72.6% 71.7%
2d05A02 1.20.141.10 Mainly Alpha › Up-down Bundle › Chitosanase, subunit A; domain 1 › Chitosanase, subunit A, domain 1 0.68 48.0 4.59e-01 77.9% 62.2%
3tjmA02 1.10.1470.20 Mainly Alpha › Orthogonal Bundle › Protein Yjbj; Chain: A; › Fatty acid synthase; domain 2 0.67 45.0 4.66e-01 96.8% 73.3%
2pv4A00 1.10.3440.10 Mainly Alpha › Orthogonal Bundle › Sama2622-like fold › Sama2622-like 0.66 53.0 4.68e-01 88.4% 95.9%
4bemJ00 1.20.120.610 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › lithium bound rotor ring of v- atpase 0.66 49.0 3.95e-01 77.9% 64.1%
3lcnB00 1.10.340.40 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Nuclear abundant poly(A) RNA-bind protein 2, N-terminal domain 0.66 45.0 4.52e-01 70.5% 99.0%
4hjzA00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.62 53.0 4.33e-01 96.8% 73.8%
3mk7A00 1.20.210.10 Mainly Alpha › Up-down Bundle › Cytochrome C Oxidase; Chain A › Cytochrome c oxidase-like, subunit I domain 0.61 52.0 3.40e-01 97.9% 48.5%
2ivxB01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 46.0 4.11e-01 85.3% 90.7%
6fakA02 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.59 40.0 4.31e-01 70.5% 84.0%
7jv7B01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.59 48.0 4.14e-01 87.4% 75.3%
1grlB01 1.10.560.10 Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain 0.59 49.0 3.72e-01 93.7% 61.5%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.58 51.0 4.15e-01 100.0% 64.0%
2i53A01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.58 47.0 4.17e-01 90.5% 86.0%
7p2yC03 1.20.150.20 Mainly Alpha › Up-down Bundle › Lysin › ATP synthase alpha/beta chain, C-terminal domain 0.56 49.0 4.54e-01 100.0% 95.3%
2b5uA02 1.10.287.620 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Helix Hairpins 0.55 27.0 2.29e-01 84.2% 27.3%
5grqA00 1.10.8.810 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Daxx helical bundle domain 0.55 40.0 4.07e-01 76.8% 84.4%
1kxpD01 1.10.246.10 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.54 38.0 3.97e-01 73.7% 83.7%
1aisB02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.53 40.0 4.05e-01 81.1% 93.6%
1ecaA00 1.10.490.10 Mainly Alpha › Orthogonal Bundle › Globin-like › Globins 0.53 33.0 2.99e-01 91.6% 44.1%
7e4gA01 1.20.1070.10 Mainly Alpha › Up-down Bundle › Rhopdopsin 7-helix transmembrane proteins › Rhodopsin 7-helix transmembrane proteins 0.52 44.0 3.57e-01 95.8% 81.2%
3d8lA00 1.10.8.940 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Uncharacterised protein, phage p2 ORF12 0.52 38.0 3.96e-01 84.2% 81.3%
3hjeA03 1.10.150.200 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Maltooligosyl trehalose synthase; domain 3 0.51 35.0 3.64e-01 71.6% 76.9%
3d1uA03 1.20.1270.240 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.50 39.0 3.87e-01 87.4% 81.2%
ECOD (15)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3963765 159.1.2.5 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › TMP_3 0.87 81.0 6.30e-01 100.0% 71.6%
3981280 159.1.2.6 alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › PhageMin_Tail 0.81 71.0 6.09e-01 100.0% 61.4%
4021621 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.78 66.0 6.43e-01 90.5% 91.4%
3964630 235.1.1.9 a+b complex topology › Lysozyme-like › Lysozyme-like › Lysozyme-like › SLT 0.75 62.0 5.14e-01 89.5% 73.2%
3993926 103.4.1.0 alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein 0.73 58.0 5.98e-01 84.2% 92.2%
3254417 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.69 50.0 5.50e-01 81.1% 94.7%
4205983 161.1.1.1 alpha complex topology › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › Helical scaffold and wing domains of SecA › SecA_SW 0.68 47.0 3.56e-01 70.5% 84.7%
3581844 101.1.10.1 alpha arrays › HTH › HTH › Cyclin-like › Cyclin_N 0.58 47.0 4.07e-01 88.4% 82.0%
4502437 601.3.1.1 alpha bundles › Four-helical up-and-down bundle › Histidine-containing phosphotransfer domain, HPT domain › Histidine-containing phosphotransfer domain, HPT domain › Hpt 0.57 44.0 4.17e-01 85.3% 78.3%
5078767 1076.1.1.1 alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Rce1-like 0.57 41.0 3.07e-01 73.7% 56.9%
3283035 2002.1.1.4 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Alpha-amylase 0.57 49.0 2.97e-01 98.9% 39.3%
4947640 4121.1.1.1 a+b three layers › CorA soluble domain-like › CorA soluble domain-like › CorA soluble domain-like › CorA 0.56 40.0 2.96e-01 74.7% 88.6%
4947163 601.30.1.4 alpha bundles › Four-helical up-and-down bundle › Helical bundle domain in hypothetical protein PH1320 › Helical bundle domain in hypothetical protein PH1320 › MMR_HSR1 0.53 46.0 3.83e-01 93.7% 75.0%
3498509 601.1.2.0 alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › I/LWEQ domain (Pfam 01608) 0.53 39.0 3.51e-01 77.9% 89.2%
3950924 7014.1.1.2 alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › TauE 0.52 42.0 3.73e-01 88.4% 68.6%
D4 medium residues 425-502
PDB