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MW367417.1__QQG33356.1__X__00050

Bact-Vir

MW367417.1__QQG33356.1__X__00050

Identity

Accession:
MW367417 ↗
Kingdom:
phage

Quality

68.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Pectobacterium_phage_PcCB7V

TaxID: 2798043

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-69
PDB
Domain cluster: rep: OL396571.1__UGC97763.1__pdc_050__00050__D19-74
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3kvpA00 6.20.140.10 Special › Other non-globular › Immunoglobulin-like › 0.72 32.0 4.05e-01 89.7% 67.4%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.63 44.0 3.59e-01 75.0% 91.7%
1yzbA01 3.90.70.40 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.62 46.0 3.80e-01 79.4% 49.2%
2wdtC02 3.30.1490.420 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 0.61 43.0 3.85e-01 76.5% 76.2%
4xcmA02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.59 42.0 3.50e-01 76.5% 43.9%
1w2tA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.57 41.0 3.36e-01 77.9% 77.6%
1p5tA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.56 40.0 3.53e-01 76.5% 83.0%
3gd0A02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.56 39.0 3.35e-01 73.5% 71.4%
5h4eA02 3.30.920.50 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Beta-1,3-glucanase, C-terminal domain 0.55 38.0 3.29e-01 75.0% 66.4%
7z6eA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 40.0 3.42e-01 82.4% 81.1%
1k32A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.90e-01 97.1% 99.7%
3ei3A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 45.0 2.94e-01 97.1% 98.2%
4whiA00 2.40.128.600 Mainly Beta › Beta Barrel › Lipocalin › 0.54 36.0 3.26e-01 72.1% 82.4%
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 42.0 2.77e-01 88.2% 72.8%
3fssA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 36.0 3.40e-01 73.5% 82.6%
3ml4A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.35e-01 76.5% 80.0%
1mixA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 37.0 3.43e-01 77.9% 79.6%
1m1hA02 2.60.320.10 Mainly Beta › Sandwich › mini-chromosome maintenance (MCM) complex, domain 2 › N-utilization substance G protein NusG, insert domain 0.52 38.0 3.59e-01 77.9% 97.6%
4mf9B01 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.52 41.0 3.22e-01 91.2% 59.4%
1tolA01 2.30.27.10 Mainly Beta › Roll › Phage FD Coat Protein, Membrane penetration domain › Phage FD Coat Protein,Membrane penetration domain 0.51 41.0 3.90e-01 100.0% 73.2%
3v9fA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 41.0 2.81e-01 95.6% 92.4%
2rgnB02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 37.0 3.21e-01 82.4% 82.1%
2wjsA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.22e-01 97.1% 64.6%
5ejrA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.45e-01 76.5% 87.5%
4pq0A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.50 35.0 3.19e-01 73.5% 72.0%
ECOD (26)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3295272 387.1.3.0 ↗ few secondary structure elements › omega toxin-like › omega toxin-related › Colipase-like 0.70 32.0 3.97e-01 89.7% 68.9%
5017243 1.1.7.0 ↗ beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.69 46.0 4.43e-01 70.6% 95.0%
5056706 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.68 43.0 4.88e-01 76.5% 88.0%
3604203 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.68 46.0 4.37e-01 70.6% 95.0%
3305439 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.67 48.0 3.02e-01 75.0% 33.3%
5023740 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.66 42.0 4.77e-01 77.9% 90.0%
3929729 633.23.1.0 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin 0.61 45.0 3.30e-01 79.4% 72.8%
3922711 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.61 51.0 3.68e-01 95.6% 89.9%
3890147 633.23.1.33 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin, GSG-1 0.61 44.0 3.17e-01 77.9% 61.4%
4966534 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 39.0 4.29e-01 77.9% 88.0%
4982334 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 42.0 4.54e-01 80.9% 92.7%
3820070 5.1.2.62 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › FBA_1 0.59 44.0 3.16e-01 83.8% 98.2%
4965523 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 40.0 4.30e-01 79.4% 90.9%
3290662 219.1.1.0 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases 0.57 42.0 3.45e-01 79.4% 43.8%
3628522 5.1.4.489 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Prenyltrans 0.55 42.0 2.42e-01 85.3% 36.9%
3559578 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.54 39.0 2.89e-01 79.4% 66.3%
3914165 5.1.4.269 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, HELP, Beta-prop_EML 0.54 44.0 2.88e-01 95.6% 85.6%
3890750 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 38.0 3.51e-01 75.0% 84.4%
286929 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.54 44.0 3.24e-01 94.1% 33.2%
4527067 206.1.3.40 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD 0.53 45.0 3.14e-01 100.0% 40.8%
4332836 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 44.0 2.77e-01 95.6% 81.2%
4029401 219.1.1.14 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Josephin 0.52 45.0 3.32e-01 97.1% 42.7%
3574500 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.52 40.0 2.45e-01 85.3% 61.5%
3623430 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.52 46.0 3.49e-01 100.0% 55.6%
3938259 3257.1.1.1 ↗ a+b complex topology › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Phosphoinositide phosphatase SAC1 N-terminal domain › Syja_N 0.51 43.0 3.37e-01 98.5% 88.5%
3705577 220.1.1.19 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › Rttp106-like_middle 0.51 36.0 2.89e-01 76.5% 52.0%
D2 high residues 84-131
PDB
Domain cluster: representative
CATH (69)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.75 57.0 3.49e-01 83.3% 13.8%
1u7bA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.74 53.0 3.32e-01 83.3% 14.7%
1sxjH01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.73 49.0 3.64e-01 83.3% 27.4%
2awnC03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.73 60.0 5.61e-01 100.0% 74.1%
2b5lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.71 59.0 3.52e-01 100.0% 16.8%
2c9kA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.71 60.0 4.06e-01 100.0% 80.5%
2rrfA00 2.30.29.160 Mainly Beta › Roll › PH-domain like › Zinc finger FYVE domain-containing protein 21, C-terminal 0.70 56.0 4.06e-01 89.6% 48.2%
2qkdA01 2.20.25.420 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › ZPR1, zinc finger domain 0.69 52.0 5.22e-01 83.3% 91.7%
1foeC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 55.0 3.88e-01 91.7% 36.6%
4b63A00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.68 56.0 3.26e-01 93.8% 62.3%
3fbuA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.68 48.0 3.38e-01 77.1% 23.5%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.68 55.0 4.65e-01 91.7% 65.1%
2nlkA02 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.67 50.0 3.14e-01 81.2% 15.8%
8a9nA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 48.0 3.57e-01 79.2% 30.5%
1gofA02 2.130.10.80 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Galactose oxidase/kelch, beta-propeller 0.67 56.0 3.36e-01 100.0% 20.1%
2iayA00 3.30.1820.10 Alpha Beta › 2-Layer Sandwich › Lp2179-like fold › Lp2179-like 0.66 56.0 4.25e-01 93.8% 67.5%
2fblB00 2.40.320.10 Mainly Beta › Beta Barrel › Hypothetical Protein Pfu-838710-001 › Hypothetical Protein Pfu-838710-001 0.66 51.0 3.65e-01 93.8% 27.7%
3eb7A03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.66 53.0 3.60e-01 93.8% 79.2%
1vkcA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.66 48.0 3.56e-01 81.2% 30.9%
4s3nA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.66 44.0 3.15e-01 81.2% 22.4%
2ia7A00 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 50.0 3.81e-01 81.2% 35.1%
8b4hA01 3.30.420.10 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H 0.66 57.0 3.98e-01 100.0% 31.5%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.65 56.0 4.24e-01 97.9% 43.3%
1uebA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.65 50.0 4.68e-01 100.0% 66.7%
1hczA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.64 56.0 5.25e-01 100.0% 84.7%
3htrA00 2.30.30.240 Mainly Beta › Roll › SH3 type barrels. › PRC-barrel domain 0.63 55.0 4.43e-01 100.0% 54.1%
7arcC01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.63 55.0 4.02e-01 100.0% 38.5%
2fsrA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.63 45.0 3.16e-01 79.2% 26.9%
1ep3B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.62 55.0 4.35e-01 100.0% 86.9%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.62 54.0 3.82e-01 97.9% 35.7%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.62 51.0 4.47e-01 97.9% 65.8%
1dlcA03 2.100.10.10 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Pesticidal crystal protein, central domain 0.61 47.0 3.22e-01 89.6% 48.7%
4dy0B02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.61 52.0 3.89e-01 100.0% 78.9%
2oap101 3.30.450.380 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.61 41.0 2.77e-01 81.2% 16.1%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.61 47.0 4.34e-01 100.0% 65.2%
1o97D01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.60 44.0 3.03e-01 97.9% 20.6%
3buuB00 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.60 45.0 2.96e-01 83.3% 23.6%
3t9yA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.60 43.0 3.18e-01 77.1% 29.1%
3a5zB01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.60 47.0 4.33e-01 100.0% 66.7%
1y96D00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.60 46.0 3.93e-01 89.6% 49.4%
1bqsA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.60 50.0 3.86e-01 100.0% 81.5%
3kxtA00 2.30.30.610 Mainly Beta › Roll › SH3 type barrels. › Chromatin protein Cren7 0.59 44.0 4.31e-01 89.6% 73.2%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.59 48.0 3.95e-01 97.9% 64.7%
3gxwC00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 51.0 4.08e-01 100.0% 65.0%
1b63A01 3.30.565.10 Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › Histidine kinase-like ATPase, C-terminal domain 0.59 44.0 2.94e-01 91.7% 19.0%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.58 41.0 3.77e-01 79.2% 53.6%
1x3zA04 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.58 43.0 4.18e-01 81.2% 72.2%
4zgfA00 2.40.128.270 Mainly Beta › Beta Barrel › Lipocalin › 0.57 46.0 3.37e-01 93.8% 94.3%
6gmhI02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.57 39.0 3.52e-01 77.1% 50.7%
1cjcA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 43.0 2.92e-01 93.8% 54.8%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 46.0 4.17e-01 100.0% 81.1%
6s8zA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.14e-01 97.9% 71.0%
2k4vA00 3.30.160.370 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Domain of unknown function DUF5064 0.57 45.0 3.53e-01 100.0% 41.6%
3oyyA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.57 44.0 4.05e-01 97.9% 65.2%
6vp6A03 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.56 48.0 2.92e-01 100.0% 19.3%
3l2pA04 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 45.0 3.53e-01 97.9% 85.8%
4i0kA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 3.83e-01 100.0% 84.2%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.55 47.0 3.92e-01 97.9% 70.8%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.55 41.0 3.61e-01 85.4% 60.8%
4akmB00 2.40.160.110 Mainly Beta › Beta Barrel › Porin › 0.55 42.0 3.20e-01 100.0% 67.5%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 40.0 3.79e-01 100.0% 65.2%
1ul7A00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.53 46.0 3.64e-01 100.0% 60.8%
2qi2A01 2.30.30.870 Mainly Beta › Roll › SH3 type barrels. › Pelota, domain A 0.52 39.0 3.23e-01 93.8% 40.4%
5aa5E00 1.10.645.10 Mainly Alpha › Orthogonal Bundle › Cytochrome-c3 Hydrogenase; chain B › Cytochrome-c3 Hydrogenase, chain B 0.52 45.0 2.56e-01 100.0% 39.9%
1fx0B01 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 45.0 3.90e-01 100.0% 91.1%
2o95B00 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.52 38.0 2.71e-01 83.3% 88.1%
3fynA00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 43.0 3.12e-01 100.0% 69.1%
6m9yA00 3.30.1300.40 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › 0.51 36.0 3.52e-01 83.3% 68.4%
4d10F01 3.40.140.10 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Cytidine Deaminase, domain 2 0.50 36.0 2.50e-01 77.1% 58.7%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3796107 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.80 54.0 4.37e-01 83.3% 37.8%
3199598 206.1.1.71 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, Kdo 0.79 71.0 4.34e-01 100.0% 19.3%
5030911 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.78 61.0 4.96e-01 83.3% 48.2%
4581150 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.77 48.0 3.02e-01 77.1% 13.0%
3580328 874.1.1.0 ↗ a+b duplicates or obligate multimers › Smc hinge domain › Smc hinge domain › Smc hinge domain 0.77 48.0 3.08e-01 77.1% 14.6%
2442100 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.76 51.0 3.67e-01 83.3% 25.0%
4018215 2003.1.3.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.74 57.0 3.29e-01 93.8% 8.5%
5000727 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.74 53.0 5.12e-01 83.3% 67.3%
4870150 227.1.1.1 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_N 0.73 53.0 3.80e-01 83.3% 27.6%
4364336 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.73 52.0 5.02e-01 83.3% 67.3%
5060010 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.73 49.0 5.03e-01 83.3% 75.6%
4985869 283.2.1.0 ↗ a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › gpW/gp25-like › gpW/gp25-like 0.71 53.0 4.34e-01 81.2% 94.4%
3186839 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.71 61.0 3.63e-01 100.0% 18.9%
4664970 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.71 48.0 4.97e-01 81.2% 75.6%
5014254 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.71 53.0 4.94e-01 81.2% 65.0%
3805925 5.1.3.118 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_3 0.71 60.0 3.69e-01 100.0% 21.4%
3723171 220.1.1.0 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 57.0 4.05e-01 93.8% 37.3%
3496242 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.69 52.0 5.23e-01 83.3% 88.0%
5051613 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.69 52.0 3.98e-01 97.9% 33.9%
3631382 2003.1.3.4 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Lys_Orn_oxgnase 0.69 55.0 3.39e-01 91.7% 41.8%
4661118 218.1.1.2 ↗ a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › Enolase_N 0.69 61.0 4.50e-01 100.0% 92.0%
4680459 375.1.1.67 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › NrdR-like_N 0.69 47.0 4.83e-01 81.2% 75.6%
4028728 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.69 51.0 4.92e-01 81.2% 78.2%
3190757 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.68 50.0 4.72e-01 81.2% 71.7%
3641871 1.1.5.8 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Putative_PNPOx 0.68 52.0 3.65e-01 85.4% 44.4%
4100965 5.1.4.291 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Kelch_1, Glyoxal_oxid_N 0.68 58.0 3.42e-01 100.0% 20.0%
4014828 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.68 52.0 4.96e-01 83.3% 80.0%
5045622 246.2.1.1 ↗ a+b four layers › Carbon-nitrogen hydrolase-like › Metallo-dependent phosphatases › Metallo-dependent phosphatases › Metallophos 0.68 50.0 2.99e-01 79.2% 97.6%
3416462 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.67 51.0 5.28e-01 83.3% 97.8%
3269121 220.1.1.20 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_TFIIH 0.67 54.0 4.19e-01 91.7% 51.8%
3805607 883.1.1.0 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like 0.67 50.0 3.47e-01 81.2% 47.5%
5079755 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.67 49.0 4.78e-01 81.2% 80.0%
3383213 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.66 56.0 3.49e-01 100.0% 25.2%
4958553 2484.1.1.34 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DNA_pol_B_exo1 0.66 54.0 3.63e-01 100.0% 33.6%
3412668 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.66 58.0 4.34e-01 100.0% 75.8%
3998224 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.66 56.0 4.04e-01 97.9% 36.6%
5029226 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.66 51.0 4.89e-01 83.3% 81.8%
3573161 2003.1.5.13 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Spermine_synth 0.66 54.0 3.17e-01 91.7% 39.1%
3317848 2004.1.1.250 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin,Microtub_bd 0.66 58.0 3.48e-01 100.0% 85.2%
3401815 220.1.1.18 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PTB 0.66 53.0 3.87e-01 91.7% 43.0%
4358798 325.1.7.0 ↗ a+b complex topology › alpha/beta-Hammerhead/Barrel-sandwich hybrid › alpha/beta-Hammerhead/Barrel-sandwich hybrid › Single hybrid motif 0.66 57.0 4.99e-01 100.0% 80.0%
2774534 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.66 57.0 3.70e-01 97.9% 23.6%
4820757 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.65 56.0 4.38e-01 97.9% 48.6%
3232194 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.65 57.0 3.72e-01 100.0% 24.7%
3726537 2003.1.2.0 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.65 50.0 2.79e-01 91.7% 6.4%
5035584 375.1.1.31 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › Elf1 0.65 54.0 4.69e-01 100.0% 66.3%
5032595 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.65 44.0 2.54e-01 81.2% 6.9%
4982618 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.64 47.0 4.74e-01 81.2% 96.0%
4842604 4272.1.1.1 ↗ a+b two layers › Nqo5-like › Nqo5-like › Nqo5-like › Complex1_30kDa 0.64 55.0 4.43e-01 97.9% 57.3%
4363805 292.2.1.9 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › Polo_box_4 0.64 52.0 4.30e-01 93.8% 54.4%
4041586 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.63 49.0 4.51e-01 100.0% 64.6%
4997648 375.1.1.21 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › zf-ZPR1 0.63 46.0 4.59e-01 81.2% 88.0%
5049116 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.62 54.0 3.68e-01 100.0% 47.2%
4115704 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.62 52.0 4.59e-01 97.9% 62.7%
4015935 2003.1.2.2 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › GMC_oxred_N 0.62 46.0 2.99e-01 91.7% 16.2%
3194095 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.61 52.0 4.25e-01 100.0% 57.9%
3286703 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.61 46.0 3.35e-01 81.2% 87.7%
3472467 284.1.3.0 ↗ a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain 0.61 51.0 4.54e-01 100.0% 72.0%
3927770 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 53.0 3.79e-01 100.0% 34.7%
3821886 4099.1.1.0 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.60 49.0 4.30e-01 100.0% 60.0%
4138663 4099.1.1.3 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Spc24 0.60 50.0 4.56e-01 100.0% 69.2%
4024279 319.1.1.8 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CactinC_cactus 0.60 51.0 4.00e-01 100.0% 51.8%
3827488 319.1.1.15 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PF27746 0.60 48.0 3.92e-01 100.0% 54.5%
4102293 2484.1.1.13 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_T 0.60 50.0 3.42e-01 100.0% 43.7%
4937420 2004.1.1.42 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.59 43.0 2.49e-01 79.2% 8.3%
4017732 220.1.1.202 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_FT_N 0.59 51.0 3.68e-01 100.0% 62.0%
3480000 5001.1.1.5 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › 7tm_3 0.59 41.0 2.58e-01 75.0% 40.0%
3735671 330.4.1.1 ↗ a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 47.0 3.92e-01 97.9% 57.0%
4952318 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 40.0 3.68e-01 72.9% 56.9%
3948467 4.1.1.57 ↗ beta barrels › SH3 › SH3 › SH3 › EFP_N 0.58 49.0 4.50e-01 100.0% 70.8%
3614398 319.1.1.8 ↗ beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › CactinC_cactus 0.58 49.0 3.72e-01 100.0% 48.8%
3466584 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 48.0 4.47e-01 100.0% 89.2%
3415921 394.1.1.1 ↗ few secondary structure elements › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › Invertebrate chitin-binding proteins › CBM_14 0.57 42.0 4.22e-01 83.3% 94.0%
4981041 375.1.1.299 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › CPxCG_zf 0.57 39.0 3.93e-01 81.2% 68.0%
3727703 331.3.1.5 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc 0.56 48.0 3.31e-01 97.9% 64.7%
3628139 241.2.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › Frataxin-like › Frataxin-like 0.56 38.0 2.82e-01 75.0% 26.2%
4970487 2002.1.1.113 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › CdhD 0.55 39.0 2.45e-01 85.4% 12.2%
4011874 244.1.1.0 ↗ a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.54 41.0 2.50e-01 91.7% 41.9%
3935168 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.54 43.0 2.70e-01 89.6% 17.5%
3969410 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.54 41.0 3.24e-01 91.7% 71.4%
4618633 4.26.1.1 ↗ beta barrels › SH3 › Chromatin protein Cren7 › Chromatin protein Cren7 › Cren7 0.54 40.0 3.86e-01 91.7% 71.2%
3536769 5.1.4.57 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PALB2_WD40 0.54 44.0 2.71e-01 100.0% 20.3%
3670182 2.1.1.1 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Ribosom_S12_S23 0.52 42.0 3.30e-01 100.0% 52.8%
3611079 10.1.1.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases 0.50 39.0 2.68e-01 100.0% 23.0%