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MW367417.1__QQG33414.1__X__00108

Bact-Vir

MW367417.1__QQG33414.1__X__00108

Identity

Accession:
MW367417 ↗
Kingdom:
phage

Quality

74.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Certrevirus› Pectobacterium_phage_PcCB7V

TaxID: 2798043

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-54
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4f0aB02 3.30.2460.20 Alpha Beta › 2-Layer Sandwich › Endo-n-acetylneuraminidase fold › Wnt (Wingless and Int-1), C-terminal domain 0.70 49.0 4.52e-01 98.1% 57.4%
2f7sA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.68 40.0 2.78e-01 100.0% 16.2%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 42.0 3.18e-01 100.0% 30.1%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.56 47.0 2.85e-01 100.0% 43.2%
5azpA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.55 36.0 3.25e-01 96.2% 44.4%
4bwiB02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.54 46.0 3.21e-01 100.0% 36.2%
5a3lA00 2.60.120.1560 Mainly Beta › Sandwich › Jelly Rolls › 0.54 45.0 3.05e-01 96.2% 53.6%
5azsA02 2.20.200.10 Mainly Beta › Single Sheet › Outer membrane efflux proteins (OEP) › Outer membrane efflux proteins (OEP) 0.53 38.0 3.28e-01 100.0% 47.0%
2py5A03 3.30.1770.10 Alpha Beta › 2-Layer Sandwich › TPR 1 domain of DNA polymerase › TPR 1 domain of DNA polymerase 0.53 40.0 3.47e-01 86.5% 73.6%
3webA00 2.60.40.770 Mainly Beta › Sandwich › Immunoglobulin-like › 0.51 43.0 3.27e-01 98.1% 53.8%
4lm6A00 3.90.510.10 Alpha Beta › Alpha-Beta Complex › Cryptophytan Phycoerythrin (Alpha-1 Chain); Chain A › Phycoerythrin alpha chain 0.51 38.0 3.68e-01 96.2% 71.0%
4msvA01 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.51 42.0 3.22e-01 100.0% 49.6%
ECOD (19)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4510690 375.14.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) › Rubredoxin-like domain in leucyl-tRNA synthetase (LS1) 0.67 48.0 4.48e-01 100.0% 61.5%
4029865 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.64 51.0 4.21e-01 100.0% 48.4%
3707641 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.62 33.0 1.95e-01 92.3% 6.1%
3491964 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 48.0 3.59e-01 100.0% 36.9%
3285052 304.139.1.4 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › Cas_CT1975 0.58 39.0 2.47e-01 71.2% 20.3%
1841049 1086.1.1.1 ↗ beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › ASTN_2_hairpin 0.57 47.0 4.67e-01 100.0% 87.3%
5073160 512.1.1.2 ↗ a+b two layers › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › a+b domain in putative modulator of DNA gyrase, PmbA/TldD (Pfam 01523) › PmbA_TldD_2nd 0.56 34.0 2.57e-01 100.0% 23.8%
3475680 3636.1.1.3 ↗ a+b two layers › XPD arch domain › XPD arch domain › XPD arch domain › ARCH_RTEL1 0.55 44.0 2.92e-01 100.0% 20.4%
4188932 67.1.1.1 ↗ beta sandwiches › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › HSP40/DnaJ peptide-binding domain › DnaJ_C 0.55 46.0 3.63e-01 94.2% 44.5%
3967397 7503.1.1.8 ↗ a/b three-layered sandwiches › TolB, N-terminal domain › TolB, N-terminal domain › TolB, N-terminal domain › DUF4136 0.54 48.0 3.44e-01 100.0% 42.7%
5081917 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 41.0 3.28e-01 88.5% 62.5%
3190860 11.1.1.55 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Mo-co_dimer 0.54 45.0 3.38e-01 100.0% 55.2%
3312580 2004.1.1.26 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin 0.53 40.0 2.54e-01 100.0% 15.4%
4311173 11.13.1.1 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Leukocidin-like › Leukocidin-like › Leukocidin 0.53 38.0 2.48e-01 100.0% 14.3%
3729468 230.1.1.1 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › Uricase 0.52 36.0 2.75e-01 100.0% 28.1%
5078948 2005.1.1.29 ↗ a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1g 0.52 41.0 2.80e-01 94.2% 24.8%
5008483 304.139.1.1 ↗ a+b two layers › Alpha-beta plaits › Cas7-related › CRISPR-associated protein Cas7/Csa2-related › DevR 0.52 41.0 2.69e-01 96.2% 99.4%
3559191 1086.1.1.0 ↗ beta meanders › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 › C-terminal beta-hairpin in astrotactin-2 0.52 45.0 4.45e-01 100.0% 94.5%
3203259 230.1.1.1 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › Uricase 0.51 40.0 2.76e-01 100.0% 23.7%