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MW367898.1__QQV89652.1__SJ_234__00234

Bact-Vir

MW367898.1__QQV89652.1__SJ_234__00234

Identity

Accession:
MW367898 ↗
Kingdom:
phage

Quality

71.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-11_123-184
PDB
Domain cluster: representative
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.80 49.0 5.75e-01 72.2% 90.0%
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.77 55.0 5.54e-01 93.1% 74.0%
4g54A01 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.73 54.0 4.45e-01 77.8% 48.0%
6bogA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.73 50.0 5.70e-01 93.1% 98.1%
6bhdA03 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.72 53.0 5.68e-01 94.4% 88.9%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.72 47.0 5.53e-01 70.8% 98.0%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.71 45.0 5.23e-01 73.6% 94.0%
4f88102 3.90.1720.60 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › 0.70 54.0 3.85e-01 83.3% 75.6%
3h8zA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 50.0 5.32e-01 83.3% 85.9%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 5.30e-01 72.2% 94.7%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.69 49.0 5.50e-01 91.7% 96.4%
4x9cD00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.69 48.0 5.21e-01 94.4% 88.3%
3p8aA02 2.60.40.4320 Mainly Beta › Sandwich › Immunoglobulin-like › 0.69 43.0 4.00e-01 84.7% 50.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 51.0 5.10e-01 81.9% 78.1%
2rdeA02 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.67 48.0 4.09e-01 75.0% 81.1%
1ts9A00 2.30.30.210 Mainly Beta › Roll › SH3 type barrels. › Ribonuclease P/MRP, subunit p29 0.66 51.0 4.65e-01 84.7% 78.6%
3frnA03 2.30.30.760 Mainly Beta › Roll › SH3 type barrels. › 0.65 42.0 4.79e-01 72.2% 92.2%
1df0A02 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.65 52.0 4.80e-01 87.5% 77.2%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.65 48.0 3.93e-01 79.2% 80.6%
3pg7A02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.64 45.0 3.99e-01 75.0% 80.0%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.63 54.0 5.14e-01 94.4% 81.0%
7afrX02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.62 46.0 4.90e-01 94.4% 95.0%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.61 48.0 4.16e-01 86.1% 58.4%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 51.0 4.67e-01 95.8% 93.8%
1kq1H00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 47.0 4.88e-01 94.4% 93.9%
4tyzA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.68e-01 75.0% 82.6%
5xbfA03 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.91e-01 75.0% 90.9%
2x4jA01 2.30.30.600 Mainly Beta › Roll › SH3 type barrels. › 0.57 49.0 4.40e-01 95.8% 78.4%
3bwsA02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 41.0 2.73e-01 79.2% 31.9%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.56 42.0 4.09e-01 95.8% 70.7%
3htyA00 2.40.128.280 Mainly Beta › Beta Barrel › Lipocalin › 0.56 46.0 4.34e-01 97.2% 96.8%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.56 46.0 4.22e-01 93.1% 68.4%
1w0pA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 3.17e-01 80.6% 79.1%
3looB01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.54 43.0 2.96e-01 88.9% 94.2%
8eg0B01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.54 44.0 2.95e-01 95.8% 78.9%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.54 39.0 4.26e-01 77.8% 100.0%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.54 45.0 4.20e-01 91.7% 73.3%
6iikB00 3.90.70.10 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Cysteine proteinases 0.53 40.0 2.71e-01 86.1% 34.7%
3gqbA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.53 44.0 4.47e-01 90.3% 93.0%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.53 43.0 3.92e-01 97.2% 98.1%
1ae9A00 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.52 41.0 3.18e-01 87.5% 42.7%
1a1rA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.52 38.0 3.69e-01 81.9% 97.6%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.51 42.0 3.70e-01 93.1% 81.6%
3k30A03 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 45.0 3.70e-01 98.6% 82.7%
2jeuA02 2.170.200.10 Mainly Beta › Beta Complex › Regulatory Protein E2; Chain: A; Domain 2 › Papillomavirus E2 early protein domain 0.51 36.0 3.27e-01 75.0% 89.1%
1efzA00 3.20.20.105 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Queuine tRNA-ribosyltransferase-like 0.51 40.0 2.56e-01 87.5% 36.6%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.51 41.0 3.26e-01 93.1% 79.5%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 40.0 3.02e-01 87.5% 66.8%
ECOD (84)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5013892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.84 59.0 6.62e-01 93.1% 94.5%
4997767 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.83 51.0 6.23e-01 91.7% 100.0%
5058671 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.82 53.0 6.02e-01 97.2% 87.3%
4990212 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.81 53.0 6.01e-01 72.2% 89.1%
4994957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 54.0 6.14e-01 73.6% 92.7%
4992872 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 54.0 6.14e-01 93.1% 92.7%
5033075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.79 51.0 5.67e-01 95.8% 85.5%
4946165 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.91e-01 93.1% 92.7%
5017214 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 51.0 5.70e-01 90.3% 90.9%
4550511 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.76 47.0 5.73e-01 88.9% 100.0%
4975150 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 53.0 5.74e-01 94.4% 88.3%
5036616 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.76 55.0 5.62e-01 94.4% 78.6%
3875218 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.75 53.0 5.59e-01 91.7% 81.5%
5025079 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 51.0 5.70e-01 93.1% 92.7%
4967397 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.75 55.0 5.83e-01 94.4% 86.2%
3914746 4.1.1.128 beta barrels › SH3 › SH3 › SH3 › Tudor_4 0.75 54.0 5.49e-01 93.1% 77.1%
4280256 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.75 48.0 5.59e-01 91.7% 94.0%
4947995 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 49.0 5.43e-01 93.1% 87.3%
4952887 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 49.0 5.51e-01 90.3% 89.1%
4980648 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.75 55.0 5.61e-01 94.4% 80.0%
4579331 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.74 52.0 5.49e-01 93.1% 82.5%
4024914 4.1.1.249 beta barrels › SH3 › SH3 › SH3 › KOW2_Spt5 0.74 52.0 5.70e-01 93.1% 88.3%
4640515 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.74 47.0 5.51e-01 76.4% 94.0%
4950396 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 48.0 5.33e-01 94.4% 87.3%
5060760 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.73 54.0 5.66e-01 94.4% 86.2%
4182977 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.73 48.0 5.20e-01 87.5% 81.7%
3302818 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.72 49.0 5.51e-01 93.1% 92.7%
3989139 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.72 48.0 5.09e-01 94.4% 76.9%
3570399 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 58.0 6.11e-01 93.1% 96.9%
4116921 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.72 48.0 5.25e-01 93.1% 83.3%
3267329 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 57.0 4.64e-01 83.3% 48.8%
5066141 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.72 52.0 5.45e-01 94.4% 84.6%
4936291 4.1.1.487 beta barrels › SH3 › SH3 › SH3 › DUF7205 0.72 52.0 5.53e-01 91.7% 84.6%
4662947 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.71 48.0 5.04e-01 93.1% 76.9%
3323530 4.1.1.118 beta barrels › SH3 › SH3 › SH3 › SH3_15 0.71 50.0 5.22e-01 72.2% 92.3%
3839849 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.71 48.0 4.99e-01 93.1% 76.9%
3976834 4.1.1.156 beta barrels › SH3 › SH3 › SH3 › DUF2158 0.70 47.0 5.47e-01 93.1% 100.0%
3278801 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.70 47.0 4.96e-01 93.1% 76.9%
3261395 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.25e-01 91.7% 87.9%
3218198 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 51.0 5.66e-01 80.6% 100.0%
3616243 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.34e-01 91.7% 92.7%
3586487 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 49.0 4.70e-01 77.8% 63.5%
4347999 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.69 48.0 5.09e-01 88.9% 80.0%
4963446 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 56.0 5.87e-01 94.4% 95.4%
4000280 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 47.0 5.28e-01 73.6% 92.7%
3517728 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.69 49.0 5.04e-01 90.3% 77.1%
3765274 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 54.0 4.98e-01 83.3% 70.0%
3671986 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.69 48.0 4.92e-01 94.4% 75.7%
3576128 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 55.0 4.65e-01 86.1% 77.4%
3511277 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 59.0 5.75e-01 94.4% 97.5%
4011604 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.68 54.0 5.34e-01 94.4% 82.7%
3881117 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 52.0 4.69e-01 83.3% 63.0%
3492757 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 58.0 5.89e-01 93.1% 98.6%
3398093 4.1.1.43 beta barrels › SH3 › SH3 › SH3 › SMN_Tudor 0.67 48.0 5.19e-01 93.1% 90.0%
4883808 148.1.3.202 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › KOW5_SPT5 0.67 45.0 5.14e-01 72.2% 96.2%
3402950 4.1.1.34 beta barrels › SH3 › SH3 › SH3 › MBT 0.67 56.0 3.41e-01 91.7% 90.9%
4058174 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.67 51.0 5.37e-01 90.3% 90.8%
3709314 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.67 48.0 4.12e-01 77.8% 89.2%
3407089 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.66 51.0 4.94e-01 81.9% 73.8%
3541241 4.1.1.8 beta barrels › SH3 › SH3 › SH3 › IN_DBD_C 0.66 44.0 4.83e-01 70.8% 83.3%
3964846 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.66 49.0 4.67e-01 80.6% 67.1%
3938908 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 49.0 5.03e-01 90.3% 81.4%
3507003 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 46.0 4.57e-01 73.6% 94.7%
4611708 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.66 47.0 5.14e-01 80.6% 91.7%
3913334 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 50.0 5.11e-01 83.3% 84.3%
4032729 4.1.1.168 beta barrels › SH3 › SH3 › SH3 › DUF2187 0.65 48.0 5.25e-01 90.3% 96.6%
4962256 101.1.2.937 alpha arrays › HTH › HTH › winged helix domain › PF25943 0.65 58.0 4.99e-01 98.6% 79.1%
3765289 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.65 49.0 4.55e-01 81.9% 64.4%
3407854 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.64 49.0 4.50e-01 83.3% 62.1%
4946028 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.64 47.0 4.38e-01 77.8% 74.4%
4098870 4.7.1.1 beta barrels › SH3 › RNase P subunit p29 › RNase P subunit p29 › RNase_P-MRP_p29 0.64 54.0 4.89e-01 91.7% 81.1%
3240406 4.1.1.347 beta barrels › SH3 › SH3 › SH3 › KOW7_SPT5, KOW6_SPT5 0.64 51.0 4.39e-01 87.5% 86.1%
4941299 4.1.1.14 beta barrels › SH3 › SH3 › SH3 › Ribosomal_L21e 0.64 46.0 4.40e-01 76.4% 75.3%
3576438 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.63 49.0 4.57e-01 83.3% 66.7%
3389169 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.63 49.0 4.68e-01 84.7% 71.8%
3604264 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 53.0 4.78e-01 95.8% 80.0%
3840679 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.62 48.0 4.42e-01 84.7% 65.3%
5067227 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.61 47.0 4.50e-01 81.9% 81.9%
3883159 4.1.1.9 beta barrels › SH3 › SH3 › SH3 › TUDOR 0.59 46.0 4.28e-01 86.1% 67.8%
3288025 5.1.3.16 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PhoX 0.56 44.0 2.83e-01 86.1% 27.7%
3493793 5.1.4.258 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › RCC1, RCC1_2 0.55 40.0 2.81e-01 86.1% 22.9%
3266157 7579.1.1.14 a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › Lipase_3 0.54 45.0 3.07e-01 91.7% 91.7%
4629022 4.1.1.238 beta barrels › SH3 › SH3 › SH3 › KOW5_SPT5 0.53 44.0 4.54e-01 95.8% 94.3%
5078789 4333.1.1.8 a+b complex topology › DNA methylase specificity domain › DNA methylase specificity domain › DNA methylase specificity domain › N6_Mtase 0.51 38.0 2.32e-01 84.7% 26.6%
D2 high residues 22-104
PDB