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MW393850.1__QQM18169.1__CPT_Salva_005__00005

Bact-Vir

MW393850.1__QQM18169.1__CPT_Salva_005__00005

Identity

Accession:
MW393850 ↗
Kingdom:
phage

Quality

91.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 1-51
PDB
Domain cluster: representative
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3i4uA01 1.20.120.1080 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.69 39.0 3.14e-01 74.5% 29.9%
3hmfA00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.67 56.0 4.37e-01 98.0% 62.1%
3rylA01 1.20.120.1210 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.66 55.0 4.16e-01 100.0% 68.6%
7myqB02 1.10.1270.20 Mainly Alpha › Orthogonal Bundle › Trp Operon Repressor; Chain A › tRNA(m1g37)methyltransferase, domain 2 0.64 41.0 4.09e-01 78.4% 61.8%
2wbiB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.62 52.0 3.79e-01 100.0% 71.5%
3iu6A00 1.20.920.10 Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like 0.61 51.0 3.76e-01 96.1% 79.7%
7prrB01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.61 47.0 3.40e-01 94.1% 27.2%
4xvxA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.60 50.0 3.71e-01 100.0% 78.9%
3dlbB03 2.170.260.50 Mainly Beta › Beta Complex › paz domain › 0.56 46.0 3.97e-01 96.1% 94.3%
4edgA01 3.90.980.10 Alpha Beta › Alpha-Beta Complex › DNA primase DNAg catalytic core, N-terminal domain › DNA primase, catalytic core, N-terminal domain 0.56 46.0 3.53e-01 100.0% 97.0%
2o5rA04 1.10.8.70 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutamate-tRNA synthetase, class I, anticodon-binding domain 1 0.54 36.0 3.73e-01 86.3% 72.9%
1o57B02 3.40.50.2020 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.53 47.0 3.16e-01 100.0% 97.4%
2ywmA01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.46e-01 98.0% 59.1%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.73 53.0 3.30e-01 80.4% 86.9%
3903818 109.3.1.163 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_4, Ank_5 0.70 50.0 3.15e-01 76.5% 16.4%
3529061 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.64 40.0 3.84e-01 98.0% 55.0%
3616404 109.3.1.162 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_5 0.62 45.0 2.91e-01 76.5% 30.9%
4004166 108.1.1.45 alpha arrays › EF-hand › EF-hand-related › EF-hand › PLCB1-4-like_EFh 0.60 48.0 4.05e-01 92.2% 100.0%
5002351 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.60 51.0 3.06e-01 100.0% 14.1%
3691304 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.58 51.0 3.22e-01 100.0% 46.0%
3239664 109.3.1.2 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank,Ank_2 0.55 39.0 2.50e-01 88.2% 13.3%
3448888 109.3.1.166 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank, Ank_2, Ank_3 0.53 35.0 2.39e-01 70.6% 15.7%
3454171 109.3.1.8 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat › Ank_2 0.52 35.0 2.32e-01 72.5% 26.7%
1827765 304.48.1.1 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › RVT_1 0.51 41.0 2.67e-01 100.0% 17.7%
3505645 103.1.1.0 alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain 0.51 38.0 3.66e-01 94.1% 69.2%
D2 medium residues 52-108
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6e5bN00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.84 65.0 4.41e-01 100.0% 24.1%
1rypL00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.83 65.0 4.31e-01 100.0% 22.6%
1a3qA01 2.60.40.340 Mainly Beta › Sandwich › Immunoglobulin-like › Rel homology domain (RHD), DNA-binding domain 0.75 50.0 3.50e-01 70.2% 21.8%
1h99A02 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.75 57.0 4.64e-01 100.0% 44.3%
1l0oC00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.73 51.0 5.15e-01 73.7% 75.4%
6muwK00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.73 56.0 3.89e-01 100.0% 24.6%
3h4cA01 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.72 60.0 5.13e-01 100.0% 56.2%
2qgsB01 1.10.472.50 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like 0.71 60.0 5.22e-01 100.0% 62.5%
4jd9G00 1.10.238.20 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain 0.69 59.0 4.74e-01 100.0% 60.0%
1h99A01 1.10.1790.10 Mainly Alpha › Orthogonal Bundle › PTS-regulatory domain, PRD › PRD domain 0.68 53.0 4.34e-01 100.0% 46.2%
2i76A02 1.10.1040.20 Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › ProC-like, C-terminal domain 0.67 47.0 3.84e-01 73.7% 49.0%
1gvfB00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.66 55.0 3.57e-01 96.5% 85.5%
4e6nA02 6.10.140.1010 Special › Helix non-globular › Helix Hairpins › 0.65 47.0 4.47e-01 75.4% 97.0%
3g36B00 1.20.890.10 Mainly Alpha › Up-down Bundle › cAMP-dependent Protein Kinase, Chain A › cAMP-dependent protein kinase regulatory subunit, dimerization-anchoring domain 0.65 46.0 4.81e-01 75.4% 90.2%
2hszA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.65 44.0 4.09e-01 71.9% 64.0%
7s0rB01 1.20.81.20 Mainly Alpha › Up-down Bundle › Receptor-associated Protein › 0.60 50.0 4.65e-01 100.0% 75.0%
3w6bB00 1.10.530.10 Mainly Alpha › Orthogonal Bundle › Lysozyme › 0.60 49.0 3.74e-01 100.0% 55.6%
3eoqB02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 51.0 3.63e-01 100.0% 79.8%
5lb3B02 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.59 44.0 2.97e-01 80.7% 75.0%
1hr6B02 3.30.830.10 Alpha Beta › 2-Layer Sandwich › Cytochrome Bc1 Complex; Chain A, domain 1 › Metalloenzyme, LuxS/M16 peptidase-like 0.59 50.0 3.48e-01 100.0% 45.7%
3lynB00 1.20.150.10 Mainly Alpha › Up-down Bundle › Lysin › Fertilization protein 0.58 46.0 3.81e-01 100.0% 64.5%
2y39A00 1.20.120.1490 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.57 47.0 3.95e-01 100.0% 78.2%
2gfhA02 1.20.120.710 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Haloacid dehalogenase hydrolase-like domain 0.56 46.0 4.12e-01 100.0% 64.0%
3td9A01 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.56 47.0 3.19e-01 93.0% 29.1%
4qysA01 3.40.50.1100 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 43.0 2.84e-01 93.0% 23.5%
5swvC02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.51 42.0 3.33e-01 100.0% 78.7%
ECOD (42)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3873240 378.1.1.25 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › MH1+NfI_DNAbd_pre-N 0.94 63.0 4.24e-01 71.9% 21.6%
5037670 604.39.1.0 alpha bundles › Spectrin repeat-like › S-component of energy-coupling factor (ECF) transporters › S-component of energy-coupling factor (ECF) transporters 0.85 61.0 4.19e-01 75.4% 25.1%
3259657 605.8.1.0 alpha duplicates or obligate multimers › ROP-like › BAS1536-like › BAS1536-like 0.83 63.0 5.84e-01 80.7% 67.1%
3858057 101.42.1.1 alpha arrays › HTH › CC2 domain in SUN proteins › CC2 domain in SUN proteins › HTH_SUN2 0.78 57.0 5.19e-01 77.2% 62.7%
3477670 190.1.1.0 alpha arrays › HMG-box-like › HMG-box › HMG-box 0.78 59.0 5.65e-01 82.5% 70.8%
3714475 181.1.1.0 alpha bundles › Domain of the SRP/SRP receptor G proteins-like › Domain of the SRP/SRP receptor G-proteins › Domain of the SRP/SRP receptor G-proteins 0.77 69.0 6.48e-01 100.0% 81.4%
4238845 5046.1.1.1 extended segments › F-type ATP synthase subunit b › F-type ATP synthase subunit b › F-type ATP synthase subunit b › ATP-synt_B 0.76 55.0 3.93e-01 77.2% 27.3%
3921 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.75 57.0 4.65e-01 100.0% 44.8%
4284151 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.72 56.0 4.93e-01 100.0% 57.6%
3481034 4009.1.1.0 alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins 0.72 62.0 5.62e-01 100.0% 77.5%
3345515 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.72 61.0 5.35e-01 100.0% 82.2%
3478089 632.19.1.0 alpha bundles › immunoglobulin/albumin-binding domain-like › Choline binding protein A › Choline binding protein A 0.71 61.0 5.16e-01 100.0% 63.6%
3804317 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.71 60.0 4.94e-01 100.0% 68.1%
4928215 310.2.1.0 a+b two layers › RRF/tRNA synthetase additional domain-like › Ribosome recycling factor, RRF › Ribosome recycling factor, RRF 0.71 50.0 4.25e-01 75.4% 47.4%
3323926 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.70 60.0 5.08e-01 100.0% 79.0%
3587266 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.70 56.0 4.10e-01 93.0% 32.9%
3599791 219.1.1.3 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › UCH 0.69 54.0 3.32e-01 89.5% 19.5%
3524685 64.1.1.0 beta meanders › WW domain-like › WW domain › WW domain 0.68 59.0 4.34e-01 100.0% 43.2%
3999832 541.1.1.2 alpha duplicates or obligate multimers › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dimerization-anchoring domain of cAMP-dependent type II PK regulatory subunit › Dpy-30 0.67 45.0 4.77e-01 77.2% 80.0%
3426697 371.1.1.7 few secondary structure elements › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › Phospholipase A2, PLA2 › zf-RVT 0.67 58.0 4.22e-01 100.0% 47.5%
3706618 101.1.6.0 alpha arrays › HTH › HTH › TrpR 0.66 45.0 4.11e-01 70.2% 100.0%
3958461 191.1.1.15 alpha bundles › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › Tetracyclin repressor-like, C-terminal domain › TetR_C_11 0.66 57.0 5.22e-01 96.5% 74.7%
3351474 7010.1.1.0 alpha arrays › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator › Activation-binding domain of RNA polymerase II mediator 0.65 46.0 4.42e-01 75.4% 64.6%
4172555 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.65 56.0 4.68e-01 100.0% 86.7%
3723123 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.65 39.0 3.91e-01 71.9% 55.0%
4520559 592.2.1.1 alpha arrays › PWI domain-like › YugE-like › YugE-like › DUF1871 0.65 43.0 3.84e-01 89.5% 47.1%
3321849 142.1.1.0 alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors 0.64 53.0 4.74e-01 100.0% 82.2%
3620740 148.1.3.0 alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain 0.64 53.0 4.65e-01 100.0% 71.6%
3976839 5069.1.3.0 alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Fumarate reductase respiratory complex transmembrane subunits 0.63 55.0 4.64e-01 100.0% 79.0%
3589642 162.1.1.1 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PRD 0.63 54.0 4.45e-01 100.0% 85.2%
3590723 162.1.1.0 alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD 0.63 46.0 3.84e-01 98.2% 45.0%
4046452 101.1.1.102 alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 0.60 46.0 3.91e-01 86.0% 82.0%
4529629 109.4.1.549 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SAPS 0.60 47.0 2.90e-01 86.0% 18.3%
3690869 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.59 40.0 3.46e-01 71.9% 53.7%
4940290 2006.1.1.18 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › HAD_2 0.59 41.0 2.81e-01 73.7% 74.0%
3973994 192.4.1.0 alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) 0.59 47.0 4.35e-01 89.5% 82.7%
3505183 2004.1.1.30 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Helicase_C 0.59 49.0 3.36e-01 98.2% 35.2%
3967836 109.3.1.0 alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.57 42.0 3.05e-01 82.5% 35.7%
4562263 3435.1.1.1 a+b two layers › Recombination-associated protein rdgC › Recombination-associated protein rdgC › Recombination-associated protein rdgC › RdgC 0.55 46.0 2.99e-01 100.0% 50.7%
3640035 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.55 35.0 3.20e-01 78.9% 43.5%
5000806 251.1.1.1 a+b two layers › FYSH domain › FYSH domain › FYSH domain › SBDS 0.54 38.0 3.15e-01 80.7% 38.3%
3618803 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.54 36.0 3.58e-01 70.2% 93.3%