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MW394390.1__QQV91812.1__vBKpMFBKp34_065__00065

Bact-Vir

MW394390.1__QQV91812.1__vBKpMFBKp34_065__00065

Identity

Accession:
MW394390 ↗
Kingdom:
phage

Quality

95.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_vB_KpM_FBKp34

TaxID: 2801835

Cluster

View cluster (2 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-27_104-177
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4mlgG00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 46.0 3.20e-01 77.8% 34.0%
4n4bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.62 45.0 3.16e-01 76.8% 29.2%
3qeeB00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 45.0 3.18e-01 76.8% 28.4%
2fggA01 3.30.160.240 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Rv1738 0.61 42.0 4.67e-01 81.8% 94.7%
3kstA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 45.0 3.19e-01 76.8% 35.1%
6mlyB01 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 44.0 3.21e-01 75.8% 30.5%
3tdgA01 3.10.450.520 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.61 31.0 3.70e-01 75.8% 72.7%
4u6bA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.61 45.0 3.08e-01 77.8% 30.6%
3uaqB02 2.40.160.90 Mainly Beta › Beta Barrel › Porin › 0.59 41.0 3.50e-01 71.7% 94.5%
5fgoA00 3.10.450.700 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.58 33.0 4.07e-01 70.7% 90.3%
1omoA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.57 46.0 4.03e-01 85.9% 62.4%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 40.0 2.78e-01 71.7% 23.4%
4ebrA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.55 39.0 3.40e-01 72.7% 96.2%
1w18A00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.55 42.0 2.74e-01 82.8% 29.3%
3hdjA01 3.30.1780.10 Alpha Beta › 2-Layer Sandwich › ornithine cyclodeaminase, domain 1 › ornithine cyclodeaminase, domain 1 0.55 46.0 4.14e-01 92.9% 65.0%
2bs6A01 2.40.128.190 Mainly Beta › Beta Barrel › Lipocalin › 0.55 41.0 4.39e-01 77.8% 95.2%
6z9cA01 2.60.40.1470 Mainly Beta › Sandwich › Immunoglobulin-like › ApaG domain 0.54 42.0 3.97e-01 83.8% 88.5%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.54 42.0 4.20e-01 84.8% 93.1%
2eabB01 2.70.98.50 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › putative glycoside hydrolase family protein from bacillus halodurans 0.53 43.0 3.32e-01 90.9% 78.6%
3cpfA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.52 30.0 3.49e-01 71.7% 83.1%
4u1eI00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 3.05e-01 93.9% 27.9%
1o70A01 2.30.180.10 Mainly Beta › Roll › FAS1 domain › FAS1 domain 0.51 35.0 3.12e-01 83.8% 48.6%
2r5vB02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.51 38.0 3.11e-01 80.8% 97.9%
ECOD (44)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3737835 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.69 42.0 4.19e-01 76.8% 59.0%
3786329 386.1.1.1 ↗ few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.67 38.0 4.77e-01 89.9% 98.2%
4879580 71.1.1.2 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolA 0.65 38.0 3.31e-01 88.9% 37.9%
3541065 5.1.4.13 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › FG-GAP 0.63 45.0 2.91e-01 74.7% 24.1%
3951937 330.8.1.1 ↗ a+b two layers › dsRBD-like › Rv2632c-like › Rv2632c-like › Rv2632c-like 0.63 45.0 4.75e-01 88.9% 83.1%
3637185 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.62 46.0 3.48e-01 76.8% 41.7%
5014331 2004.1.1.293 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_15 0.62 34.0 2.06e-01 73.7% 7.2%
5038973 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.61 46.0 3.10e-01 77.8% 26.9%
3894031 330.1.1.6 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › Staufen_C 0.61 39.0 4.14e-01 81.8% 74.1%
3726238 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.61 47.0 3.09e-01 80.8% 23.7%
5051613 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.60 42.0 3.97e-01 92.9% 60.2%
3418470 5.1.3.54 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF1668 0.59 46.0 3.20e-01 82.8% 28.9%
3690104 4026.1.1.0 ↗ a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.59 42.0 3.61e-01 72.7% 56.0%
3880745 5.1.3.187 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › KNTC1_N 0.59 48.0 3.20e-01 89.9% 24.2%
3785743 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 49.0 3.23e-01 93.9% 23.8%
3929846 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 43.0 3.03e-01 78.8% 26.6%
3265052 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.58 44.0 3.37e-01 81.8% 48.9%
5036758 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.58 42.0 3.04e-01 75.8% 31.4%
5024203 330.10.1.0 ↗ a+b two layers › dsRBD-like › Heterocyclase TruD C-terminal domain › Heterocyclase TruD C-terminal domain 0.58 38.0 3.95e-01 82.8% 73.3%
3475877 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.58 47.0 4.16e-01 90.9% 86.0%
3330259 5.1.3.117 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Kelch_1+Kelch_KLHDC2_KLHL20_DRC7 0.57 44.0 3.16e-01 81.8% 31.1%
5059102 241.1.1.30 ↗ a+b two layers › Type III secretory system chaperone-like › Type III secretory system chaperone › Type III secretory system chaperone › PF26556 0.57 46.0 4.05e-01 87.9% 74.5%
3805475 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.56 43.0 3.03e-01 81.8% 26.5%
3257727 216.1.1.0 ↗ a+b two layers › UBC-like › UBC-like › UBC-like 0.56 48.0 4.40e-01 98.0% 72.3%
3510695 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.56 36.0 3.90e-01 80.8% 80.0%
4883226 5.1.3.21 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › Fungal_lectin 0.56 41.0 4.27e-01 77.8% 87.1%
3642733 5.1.3.65 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › DUF295 0.55 39.0 2.79e-01 74.7% 42.3%
3890928 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.55 42.0 3.45e-01 80.8% 81.1%
3802832 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.55 42.0 2.94e-01 81.8% 26.2%
3204975 241.15.1.2 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain › PI31_Prot_N 0.55 41.0 3.49e-01 79.8% 58.2%
3364063 295.1.1.3 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PurA 0.54 41.0 3.67e-01 79.8% 76.4%
3266323 216.1.1.4 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › RWD 0.54 40.0 3.75e-01 76.8% 84.2%
3277064 5.1.4.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.54 35.0 2.96e-01 76.8% 37.1%
3687908 66.1.1.0 ↗ beta sandwiches › ISP domain › ISP domain › ISP domain 0.54 39.0 3.79e-01 79.8% 68.2%
4059006 9.9.1.0 ↗ beta barrels › Lipocalins/Streptavidin › Hypothetical protein YwiB › Hypothetical protein YwiB 0.53 37.0 3.42e-01 71.7% 74.4%
3829694 5.1.3.67 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › FBA_1 0.53 40.0 2.86e-01 81.8% 26.7%
3287259 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.53 39.0 2.72e-01 77.8% 26.6%
3784810 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.52 37.0 3.83e-01 74.7% 81.1%
4930329 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 28.0 3.53e-01 71.7% 100.0%
3472515 5.1.4.14 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Peptidase_S9_N 0.52 40.0 2.80e-01 84.8% 29.9%
3204911 216.1.1.20 ↗ a+b two layers › UBC-like › UBC-like › UBC-like › UBC_like 0.52 37.0 3.48e-01 73.7% 65.0%
5010183 5.1.3.278 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › PF29948 0.51 38.0 2.70e-01 78.8% 33.0%
3721487 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.51 37.0 2.58e-01 77.8% 34.2%
3982792 330.1.1.14 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › RecT 0.50 37.0 3.19e-01 75.8% 55.3%
D2 high residues 30-98
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2euiA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.67 42.0 3.32e-01 97.1% 30.7%
3m3kA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.58 38.0 3.06e-01 100.0% 32.2%
4ykiA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.57 37.0 3.00e-01 100.0% 31.3%
2aamC00 3.20.20.70 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Aldolase class I 0.57 34.0 2.30e-01 100.0% 13.6%
4uyaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 44.0 3.18e-01 88.4% 63.5%
1h8eG02 3.40.1380.10 Alpha Beta › 3-Layer(aba) Sandwich › Pyruvate Kinase; Chain: A, domain 1 › ATP synthase, F1 complex, gamma subunit 0.51 44.0 3.34e-01 100.0% 73.6%
2dr1A01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 39.0 3.15e-01 82.6% 67.4%
1wi0A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 38.0 3.36e-01 85.5% 96.5%
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4982322 5081.1.1.1 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like › Rhomboid 0.61 49.0 3.49e-01 89.9% 86.4%
5006745 2484.1.1.26 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Piwi 0.56 48.0 3.30e-01 98.6% 50.2%
4636242 101.35.1.37 ↗ alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › FlgI 0.53 41.0 3.95e-01 82.6% 92.2%
3485399 101.1.2.303 ↗ alpha arrays › HTH › HTH › winged helix domain › RPC5 0.53 32.0 2.85e-01 82.6% 38.2%
4311385 101.1.2.553 ↗ alpha arrays › HTH › HTH › winged helix domain › FlgI 0.52 41.0 3.99e-01 87.0% 92.3%
5041843 2484.1.1.43 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Endonuclease_5 0.51 43.0 3.19e-01 100.0% 47.5%