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MW394390.1__QQV91925.1__vBKpMFBKp34_008__00008

Bact-Vir

MW394390.1__QQV91925.1__vBKpMFBKp34_008__00008

Identity

Accession:
MW394390 ↗
Kingdom:
phage

Quality

81.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Klebsiella_phage_vB_KpM_FBKp34

TaxID: 2801835

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 7-81
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF14020.12 best DUF4236 37.6 3.40e-09 68.0% 89.1%
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4jpdA00 3.30.920.10 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Frataxin/CyaY 0.74 50.0 4.43e-01 72.0% 48.6%
3p24A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.70 54.0 4.20e-01 81.3% 71.2%
1gpqB00 3.40.1420.10 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › Inhibitor of vertebrate lysozyme 0.70 50.0 4.15e-01 74.7% 78.9%
2ijaA00 3.30.2140.20 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › 0.70 50.0 3.34e-01 76.0% 79.1%
3dcxA00 2.30.29.50 Mainly Beta › Roll › PH-domain like › Bacterial Pleckstrin homology domain 0.68 51.0 4.32e-01 77.3% 98.3%
4on1A01 2.40.128.470 Mainly Beta › Beta Barrel › Lipocalin › 0.68 47.0 3.85e-01 72.0% 53.2%
4guzA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.67 46.0 3.44e-01 72.0% 60.8%
2ovsA00 2.40.128.380 Mainly Beta › Beta Barrel › Lipocalin › T3SS negative regulator GrlR 0.66 46.0 3.95e-01 72.0% 48.3%
3vsmA03 2.60.40.4340 Mainly Beta › Sandwich › Immunoglobulin-like › 0.65 47.0 4.38e-01 76.0% 100.0%
1w5rA01 3.30.2140.10 Alpha Beta › 2-Layer Sandwich › Arylamine N-acetyltransferase fold › Arylamine N-acetyltransferase 0.63 44.0 3.39e-01 73.3% 76.3%
3q6aB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 46.0 3.77e-01 76.0% 48.5%
1xffA00 3.60.20.10 Alpha Beta › 4-Layer Sandwich › Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 › Aminohydrolase, N-terminal nucleophile (Ntn) domain 0.63 43.0 3.01e-01 70.7% 58.4%
2jpiA00 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.62 45.0 4.18e-01 77.3% 70.8%
6o15A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.61 48.0 3.49e-01 89.3% 72.1%
7xr9E01 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.60 46.0 3.36e-01 81.3% 81.2%
3witA00 2.20.220.20 Mainly Beta › Single Sheet › Glycosyl hydrolase fold › 0.60 40.0 4.24e-01 76.0% 79.7%
2fmlA02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.59 41.0 3.24e-01 73.3% 81.7%
1evjC02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.59 41.0 3.17e-01 73.3% 42.5%
2bjfA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.58 46.0 3.09e-01 88.0% 61.0%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 44.0 3.03e-01 81.3% 47.3%
8es5A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 43.0 3.59e-01 81.3% 48.6%
7ne4A01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.57 46.0 3.07e-01 89.3% 34.7%
4p78C00 3.30.920.30 Alpha Beta › 2-Layer Sandwich › Metal Transport, Frataxin; Chain A › Hypothetical protein. 0.57 32.0 3.38e-01 74.7% 62.1%
3ecqA01 2.60.120.870 Mainly Beta › Sandwich › Jelly Rolls › 0.56 41.0 3.13e-01 77.3% 47.0%
2j7qA00 3.90.70.120 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 40.0 2.84e-01 74.7% 60.2%
6j9eJ00 3.30.160.560 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.56 33.0 3.56e-01 70.7% 68.2%
2giaB00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.55 40.0 3.25e-01 77.3% 43.8%
2f2hA01 2.60.40.1760 Mainly Beta › Sandwich › Immunoglobulin-like › glycosyl hydrolase (family 31) 0.55 41.0 2.91e-01 80.0% 46.1%
5hkeA01 3.60.60.10 Alpha Beta › 4-Layer Sandwich › Penicillin V Acylase; Chain A › Penicillin V Acylase; Chain A 0.55 39.0 2.58e-01 74.7% 100.0%
3ip3A02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.53 41.0 3.17e-01 89.3% 72.4%
4bf3A00 2.30.31.50 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Borrelia outer surface protein E/F 0.53 39.0 3.26e-01 78.7% 63.9%
6n8pA01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.52 43.0 2.90e-01 100.0% 39.9%
2hqyA01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.52 38.0 3.21e-01 78.7% 78.5%
1skoB00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.51 35.0 3.10e-01 72.0% 58.6%
1vybA00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.50 40.0 2.96e-01 92.0% 65.3%
5mu3B00 3.40.50.12050 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.50 42.0 3.42e-01 100.0% 68.7%
3lp9A00 2.110.10.10 Mainly Beta › 4 Propeller › Hemopexin › Hemopexin-like domain 0.50 38.0 2.78e-01 84.0% 48.0%
ECOD (40)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3909523 6129.1.1.0 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family 0.73 57.0 4.07e-01 82.7% 38.0%
4942828 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.71 50.0 3.82e-01 72.0% 76.8%
4592780 219.1.1.6 ↗ a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Acetyltransf_2 0.71 50.0 3.33e-01 73.3% 81.4%
5037561 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.70 49.0 4.13e-01 73.3% 95.8%
3508839 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.69 53.0 3.69e-01 81.3% 71.1%
3697914 298.1.1.0 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 0.68 50.0 3.22e-01 77.3% 79.4%
185625 4099.1.1.7 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Ctf19_RWD1 0.67 42.0 3.62e-01 74.7% 40.7%
4941285 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.67 37.0 3.81e-01 74.7% 55.7%
4997629 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.67 51.0 3.77e-01 81.3% 75.7%
3419526 5.1.5.146 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_AT5G49610-like 0.67 52.0 3.39e-01 85.3% 31.8%
5015520 71.1.1.0 ↗ beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB 0.67 49.0 3.52e-01 77.3% 34.3%
4669469 10.1.1.94 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › PF25849 0.67 49.0 3.36e-01 77.3% 49.4%
3733356 298.1.1.25 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › ox_reductase_C 0.65 56.0 4.28e-01 93.3% 47.9%
2130268 4099.1.1.7 ↗ a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like › Ctf19_RWD1 0.64 42.0 4.08e-01 72.0% 60.0%
3942485 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.62 45.0 3.78e-01 74.7% 50.0%
4034138 7520.1.1.0 ↗ a/b three-layered sandwiches › CinA-like › CinA-like › CinA-like 0.60 43.0 3.70e-01 80.0% 66.2%
3974608 7515.1.1.0 ↗ a/b three-layered sandwiches › Alkaline phosphatase-like › Alkaline phosphatase-like › Alkaline phosphatase-like 0.59 41.0 2.63e-01 73.3% 72.3%
1200690 298.1.1.8 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C 0.59 41.0 3.34e-01 73.3% 50.7%
5078256 298.1.1.24 ↗ a+b two layers › FwdE/GAPDH domain-like › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain › GFO_IDH_MocA_C3 0.58 46.0 3.54e-01 90.7% 70.3%
3343255 5.1.4.37 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Nup160 0.58 50.0 3.13e-01 100.0% 30.6%
3696318 5.1.4.249 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_pof12 0.58 49.0 3.10e-01 93.3% 44.0%
None — 0.58 50.0 2.95e-01 100.0% 65.8%
3637723 5.1.5.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40 0.58 46.0 2.93e-01 88.0% 45.2%
3717941 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.57 47.0 2.90e-01 93.3% 17.6%
3266298 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.57 48.0 3.88e-01 90.7% 97.0%
4891036 5.1.5.92 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › WD40, Beta-prop_EML 0.56 44.0 3.01e-01 88.0% 59.7%
3450942 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.56 40.0 2.91e-01 78.7% 68.5%
4149445 210.1.3.4 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_6 0.55 38.0 2.71e-01 73.3% 55.5%
4226087 5.1.1.1 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed › Hemopexin 0.55 39.0 2.91e-01 78.7% 92.6%
4847379 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.55 44.0 2.96e-01 89.3% 58.1%
3488314 5.1.4.302 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EML 0.54 45.0 2.93e-01 93.3% 48.2%
4031368 3264.1.1.0 ↗ 0.54 45.0 3.63e-01 92.0% 75.2%
None — 0.53 45.0 3.16e-01 97.3% 36.3%
3903857 5.1.4.12 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Sema 0.53 43.0 2.74e-01 92.0% 73.4%
3174821 5.1.4.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.53 42.0 2.81e-01 88.0% 31.4%
3821429 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.53 43.0 3.42e-01 90.7% 55.6%
3809935 5.1.5.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.53 44.0 2.90e-01 100.0% 32.2%
4609138 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 39.0 3.15e-01 81.3% 65.3%
4160660 331.2.1.1 ↗ a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › PGM_PMM_IV 0.52 37.0 3.30e-01 76.0% 50.4%
3172856 5.1.4.575 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF30290 0.51 37.0 2.57e-01 78.7% 61.8%