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MW394390.1__QQV91957.1__vBKpMFBKp34_001__00001

Bact-Vir

MW394390.1__QQV91957.1__vBKpMFBKp34_001__00001

Identity

Accession:
MW394390 ↗
Kingdom:
phage

Quality

80.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 2-53
PDB
CATH (48)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4a18X01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.83 76.0 6.53e-01 100.0% 73.4%
1vwxS02 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.74 65.0 5.78e-01 100.0% 72.4%
2jxtA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.73 63.0 5.62e-01 100.0% 71.1%
1u84A00 1.10.340.20 Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › Apc36109-like domain 0.73 61.0 5.31e-01 96.2% 85.2%
5mswA01 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.72 52.0 4.24e-01 75.0% 68.5%
2hfqA00 3.10.510.10 Alpha Beta › Roll › NE1680-like fold › NE1680-like 0.71 62.0 5.31e-01 100.0% 64.7%
3hvnA01 3.90.840.10 Alpha Beta › Alpha-Beta Complex › HIV-1 Reverse Transcriptase; Chain A, domain 3 › Thiol-activated cytolysin superfamily/Thiol-activated cytolysin, alpha-beta domain 0.71 61.0 4.29e-01 100.0% 34.9%
4llgM00 3.10.20.510 Alpha Beta › Roll › Ubiquitin-like (UB roll) › RNA polymerase inhibitor 0.70 56.0 5.68e-01 100.0% 92.0%
2qsdA01 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.69 59.0 5.50e-01 100.0% 77.6%
3ps9A03 3.30.9.10 Alpha Beta › 2-Layer Sandwich › D-Amino Acid Oxidase; Chain A, domain 2 › D-Amino Acid Oxidase, subunit A, domain 2 0.68 56.0 4.20e-01 100.0% 56.0%
5yjlD01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.67 50.0 3.66e-01 80.8% 57.7%
2wxfA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.66 58.0 4.47e-01 100.0% 65.5%
2cg5B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.65 44.0 4.03e-01 71.2% 80.3%
5kfzA04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.64 54.0 4.20e-01 100.0% 50.4%
2hcfA01 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.64 54.0 3.82e-01 94.2% 67.5%
2rs7A01 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.64 47.0 4.20e-01 78.8% 56.8%
5swvC02 3.40.50.10860 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 0.64 55.0 4.13e-01 100.0% 91.9%
2pmvA02 2.170.130.30 Mainly Beta › Beta Complex › Ferric Hydroxamate Uptake Protein; Chain A, domain 1 › 0.64 55.0 4.40e-01 100.0% 88.9%
2iabA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.64 54.0 4.00e-01 100.0% 36.4%
7pjjA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.63 44.0 3.36e-01 100.0% 30.2%
1unnC00 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.62 53.0 4.23e-01 100.0% 46.8%
6mv2A02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.61 52.0 4.22e-01 100.0% 64.8%
3zm6A02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.61 49.0 3.35e-01 96.2% 88.3%
4bqqB02 3.90.1750.20 Alpha Beta › Alpha-Beta Complex › Hect, E3 ligase catalytic domain fold › Putative Large Serine Recombinase; Chain B, Domain 2 0.60 48.0 3.29e-01 88.5% 75.3%
5of3A00 3.90.920.10 Alpha Beta › Alpha-Beta Complex › DNA primase, PRIM domain › DNA primase, PRIM domain 0.60 44.0 2.80e-01 100.0% 13.8%
3ulbA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.48e-01 73.1% 57.8%
2zl7A02 2.40.30.120 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Positive stranded ssRNA viruses 0.59 48.0 4.10e-01 100.0% 53.8%
1oeyA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.59 50.0 4.37e-01 100.0% 85.4%
4k6jB00 1.25.10.10 Mainly Alpha › Alpha Horseshoe › Leucine-rich Repeat Variant › Leucine-rich Repeat Variant 0.59 52.0 3.01e-01 98.1% 23.1%
1x67A01 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 41.0 3.21e-01 100.0% 30.8%
2incC00 3.10.20.270 Alpha Beta › Roll › Ubiquitin-like (UB roll) › TmoB-like 0.58 47.0 4.18e-01 100.0% 88.0%
3djcB01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.57 47.0 4.14e-01 100.0% 60.2%
3nd1A02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.57 44.0 3.44e-01 88.5% 39.1%
3d0jA00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.57 41.0 3.01e-01 76.9% 48.6%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 45.0 3.61e-01 100.0% 41.1%
2b39A10 2.60.120.1540 Mainly Beta › Sandwich › Jelly Rolls › 0.56 43.0 3.34e-01 100.0% 37.9%
1wlfA01 2.40.40.20 Mainly Beta › Beta Barrel › Barwin-like endoglucanases › 0.54 46.0 4.04e-01 100.0% 61.9%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 43.0 3.70e-01 100.0% 53.3%
4n0rA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 43.0 3.78e-01 96.2% 90.6%
1gjsA00 1.10.8.40 Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Albumin-binding domain 0.53 36.0 3.38e-01 71.2% 64.6%
1qysA00 3.30.1710.10 Alpha Beta › 2-Layer Sandwich › top7, de novo designed protein › top7, de novo designed protein 0.53 41.0 3.54e-01 92.3% 95.7%
4kyzA00 3.30.70.600 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein S10 0.53 44.0 3.18e-01 100.0% 47.3%
5frdA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.52 40.0 2.73e-01 96.2% 52.3%
2czrA02 3.90.79.30 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › TBP-interacting protein, C-terminal domain 0.52 37.0 2.97e-01 100.0% 35.0%
4xrpA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.51 41.0 3.08e-01 90.4% 90.6%
2pjyC00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.51 43.0 3.79e-01 100.0% 64.6%
4harA00 3.10.50.50 Alpha Beta › Roll › Chitinase A; domain 3 › Rubella virus capsid protein 0.51 43.0 3.60e-01 100.0% 94.9%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.51 37.0 2.92e-01 88.5% 87.6%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4939739 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.80 72.0 6.88e-01 100.0% 91.5%
5074648 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.80 72.0 6.32e-01 100.0% 72.0%
4990637 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.79 71.0 6.06e-01 100.0% 67.5%
4967222 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.79 70.0 6.69e-01 100.0% 90.0%
5012895 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.79 71.0 6.98e-01 100.0% 96.4%
4160542 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.78 70.0 6.81e-01 100.0% 93.1%
5065436 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.78 70.0 6.55e-01 100.0% 84.4%
2527501 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.78 70.0 5.56e-01 100.0% 52.9%
4013514 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.78 70.0 5.51e-01 100.0% 52.4%
4996552 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.78 70.0 5.89e-01 100.0% 64.7%
4943401 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.78 69.0 5.87e-01 100.0% 67.1%
4951473 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.78 70.0 6.54e-01 100.0% 85.7%
3345090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.77 69.0 5.42e-01 100.0% 50.0%
5067865 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.77 69.0 6.24e-01 100.0% 77.1%
2831852 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.77 69.0 5.51e-01 100.0% 53.5%
4937773 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.77 70.0 6.73e-01 100.0% 94.8%
4969863 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.77 68.0 6.05e-01 100.0% 72.0%
5030993 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.77 68.0 5.90e-01 100.0% 67.5%
2106285 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.76 67.0 5.29e-01 100.0% 50.9%
4583560 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.76 60.0 6.34e-01 100.0% 97.8%
5000510 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.75 66.0 5.89e-01 100.0% 72.0%
4983090 3115.1.1.1 a+b two layers › GP2-like › RplX-like › RplX-like › Ribosomal_L18A 0.74 65.0 5.71e-01 100.0% 68.4%
5039449 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.74 61.0 4.92e-01 100.0% 46.7%
3447076 101.1.1.0 alpha arrays › HTH › HTH › Three-helical HTH 0.74 58.0 4.80e-01 84.6% 96.7%
3455132 101.1.1.121 alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 0.72 57.0 4.35e-01 86.5% 98.3%
4929842 386.1.1.65 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › DUF1059 0.71 55.0 5.77e-01 98.1% 100.0%
3645174 1.1.5.0 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 0.69 51.0 3.58e-01 80.8% 50.0%
4929843 4123.1.1.0 few secondary structure elements › E7 C-terminal domain-like › E7 C-terminal domain-like › E7 C-terminal domain-like 0.69 51.0 5.19e-01 82.7% 100.0%
4962193 302.4.1.1 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › Hydant_A_C 0.68 58.0 4.70e-01 100.0% 49.5%
3235659 101.1.1.102 alpha arrays › HTH › HTH › Three-helical HTH › Lin-8 0.68 53.0 4.96e-01 86.5% 87.7%
4170997 304.48.1.39 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like › MatK_N 0.67 54.0 3.67e-01 90.4% 70.2%
5022945 302.4.1.0 a+b two layers › Reverse ferredoxin › a+b domain in Acetophenone carboxylase (Apc) alpha subunit › a+b domain in Acetophenone carboxylase (Apc) alpha subunit 0.67 57.0 4.63e-01 100.0% 49.5%
4376375 2484.1.1.49 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Hydant_A_N 0.67 56.0 4.19e-01 100.0% 41.4%
5053721 2492.1.1.5 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › AICARFT_IMPCHas 0.66 56.0 4.18e-01 100.0% 72.7%
3622513 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.66 56.0 5.44e-01 100.0% 93.3%
3274131 4026.1.1.0 a+b three layers › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) › a+b domain in Rap/Ran-GAP (Pfam 02145) 0.65 54.0 4.22e-01 100.0% 53.5%
3968768 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.65 54.0 4.91e-01 100.0% 94.7%
5081134 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.65 50.0 4.90e-01 100.0% 80.0%
4231372 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.64 55.0 5.03e-01 100.0% 98.6%
4147528 4.1.1.307 beta barrels › SH3 › SH3 › SH3 › PF26132 0.63 54.0 4.98e-01 100.0% 100.0%
3710894 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 51.0 5.00e-01 94.2% 84.5%
4635290 4967.1.1.25 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.62 50.0 3.01e-01 92.3% 35.8%
3216210 3115.1.1.0 a+b two layers › GP2-like › RplX-like › RplX-like 0.62 52.0 5.37e-01 100.0% 98.0%
3850966 3346.1.1.1 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › UfSP2_N 0.62 50.0 3.32e-01 96.2% 21.6%
3944800 221.4.1.1 a+b two layers › beta-Grasp › Nudix › Nudix › NUDIX 0.62 51.0 3.99e-01 100.0% 49.2%
5000514 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.61 50.0 4.34e-01 96.2% 100.0%
3695979 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.61 48.0 3.65e-01 84.6% 68.4%
3600531 4012.3.1.0 a+b two layers › SSHS domain › SSHS domain in CRISPR-associated endonuclease Cas9 › SSHS domain in CRISPR-associated endonuclease Cas9 0.61 49.0 4.97e-01 100.0% 96.2%
4458090 3019.1.1.0 beta sandwiches › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain › gp11/flagellar cap protein FliD insertion domain 0.60 50.0 3.97e-01 100.0% 56.7%
4126255 4967.1.1.25 alpha bundles › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › helical bundle domain in reverse transcriptase-like polymerases › Intron_maturas2+MatK_N 0.60 49.0 3.17e-01 94.2% 51.3%
4037822 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.59 48.0 2.89e-01 92.3% 39.5%
4544858 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.58 47.0 2.85e-01 94.2% 37.3%
3167354 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.58 46.0 4.29e-01 100.0% 82.2%
3935630 3346.1.1.0 a+b two layers › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 › N-terminal domain in ubiquitin-fold modifier 1 specific protease UfSP2 0.57 45.0 3.20e-01 98.1% 26.3%
4608174 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.57 45.0 4.02e-01 100.0% 68.9%
3326759 284.1.3.1 a+b two layers › FKBP-like › FKBP-like › WNK1 autoinhibitory domain › SNF5 0.57 45.0 4.19e-01 100.0% 78.7%
4110965 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.57 46.0 3.56e-01 100.0% 70.0%
3285401 3986.2.1.0 a+b two layers › GTP-binding protein lepA C-terminal domain-like › Antitoxin Dmd › Antitoxin Dmd 0.57 45.0 4.11e-01 100.0% 65.3%
3221670 4.8.1.1 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 45.0 3.61e-01 90.4% 63.0%
4547274 3714.1.1.0 a+b two layers › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain › Lon-like protease MtaLonC helical domain 0.53 46.0 3.72e-01 98.1% 96.0%
4027469 4246.1.1.2 a+b complex topology › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › N-terminal domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_1 0.53 41.0 2.63e-01 90.4% 34.5%
3350473 331.1.1.0 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.52 41.0 3.84e-01 96.2% 75.7%
1718755 2007.1.2.11 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › Peripla_BP_4 0.51 38.0 3.24e-01 84.6% 46.2%
4952738 322.1.1.2 a+b two layers › HPr-like › HPr-like › HPr-like › 3H 0.51 44.0 3.54e-01 100.0% 53.2%
3626771 210.2.1.1 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain › PP2C 0.50 41.0 2.74e-01 98.1% 33.3%
3929515 382.1.1.21 few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › PF28966 0.50 35.0 2.93e-01 76.9% 95.2%
4091986 2484.1.1.37 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Pan_kinase 0.50 39.0 3.20e-01 94.2% 82.6%