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MW394391.1__QQV92028.1__vBKpMFBKp24_229__00229

Bact-Vir

MW394391.1__QQV92028.1__vBKpMFBKp24_229__00229

Identity

Accession:
MW394391 ↗
Kingdom:
phage

Quality

45.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Chimalliviridae› Maaswegvirus› Klebsiella_phage_vB_KpM_FBKp24

TaxID: 2801834

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 490-557
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2j8bA00 2.10.60.10 Mainly Beta › Ribbon › CD59 › CD59 0.68 41.0 3.97e-01 82.4% 52.6%
3q8pB04 3.30.1490.100 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › DNA polymerase, Y-family, little finger domain 0.65 55.0 4.86e-01 100.0% 80.6%
4p4tA00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.61 49.0 3.10e-01 100.0% 17.6%
2uwqA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 53.0 4.94e-01 100.0% 88.4%
1cfzA00 3.40.50.1450 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HybD-like 0.57 43.0 3.38e-01 83.8% 92.6%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 48.0 4.48e-01 98.5% 96.6%
5t8uB01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 44.0 2.97e-01 86.8% 65.5%
1fxkB00 1.10.287.370 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.54 34.0 2.97e-01 72.1% 40.4%
6f95A01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.54 45.0 3.61e-01 98.5% 71.6%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.54 41.0 3.58e-01 95.6% 53.2%
3qthB00 1.20.120.450 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain 0.53 44.0 3.36e-01 92.6% 86.6%
3jv7A01 3.90.180.10 Alpha Beta › Alpha-Beta Complex › Quinone Oxidoreductase; Chain A, domain 1 › Medium-chain alcohol dehydrogenases, catalytic domain 0.52 39.0 2.81e-01 82.4% 44.7%
1ujrA01 3.30.720.50 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.51 39.0 3.77e-01 86.8% 84.3%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 44.0 3.98e-01 98.5% 91.5%
4ecnA01 2.60.40.3540 Mainly Beta › Sandwich › Immunoglobulin-like › Domain of unknown function DUF4458 0.50 42.0 3.72e-01 100.0% 63.1%
1iw4A00 3.30.60.30 Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › 0.50 36.0 3.91e-01 100.0% 94.5%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3682976 2007.1.4.3 ↗ a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Phosphofructokinase N-terminal domain › NAD_kinase 0.67 38.0 2.75e-01 85.3% 20.0%
3700104 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.63 48.0 4.06e-01 83.8% 87.8%
3739303 302.1.1.1 ↗ a+b two layers › Reverse ferredoxin › Lesion bypass DNA polymerase (Y-family), little finger domain › Lesion bypass DNA polymerase (Y-family), little finger domain › IMS_C 0.61 52.0 4.41e-01 100.0% 70.8%
3365621 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.61 45.0 3.71e-01 92.6% 41.0%
3696190 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 47.0 3.93e-01 83.8% 93.3%
3709136 108.1.1.0 ↗ alpha arrays › EF-hand › EF-hand-related › EF-hand 0.60 42.0 3.53e-01 72.1% 66.1%
None — 0.59 48.0 2.79e-01 100.0% 10.0%
3785972 11.1.4.14 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › UDP-g_GGTase 0.58 39.0 3.48e-01 89.7% 49.5%
1401773 2004.1.1.0 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 47.0 3.15e-01 94.1% 77.6%
4221715 593.1.1.1 ↗ alpha bundles › GroEL equatorial domain-like › GroEL equatorial domain-like › GroEL equatorial domain-like › Cpn60_TCP1 0.56 46.0 3.20e-01 92.6% 64.2%
4577794 221.1.4.3 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Nqo1 middle domain-like › SLBB_2 0.56 43.0 3.88e-01 100.0% 60.0%
4018029 11.1.4.16 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › EMC7_beta-sandw 0.55 43.0 3.79e-01 100.0% 57.0%
3988099 11.1.4.11 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › PUD 0.55 42.0 3.68e-01 100.0% 54.3%
3746678 382.1.1.16 ↗ few secondary structure elements › Snake toxin-like › Snake toxin-like › Snake toxin-like › CD59 0.55 42.0 4.08e-01 83.8% 93.3%
4990624 212.1.1.3 ↗ a+b two layers › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › Ribosomal protein S5 domain 2-like › GHMP_kinases_N 0.55 45.0 3.44e-01 94.1% 86.3%
3589296 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 44.0 3.41e-01 100.0% 53.5%
4583866 223.1.1.5 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › HrcA 0.53 41.0 3.23e-01 88.2% 37.6%
3193904 221.1.1.93 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.53 46.0 3.78e-01 100.0% 83.8%
908 4357.1.1.1 ↗ beta barrels › WWE domain › WWE domain › WWE domain › WWE 0.53 41.0 3.97e-01 88.2% 86.3%
4505937 513.1.1.1 ↗ a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.52 37.0 3.52e-01 76.5% 72.9%
3265036 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.52 39.0 3.70e-01 82.4% 84.7%
3219660 376.1.1.96 ↗ few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › ZZ_ADA2 0.52 31.0 3.35e-01 80.9% 76.0%
4987895 11.1.4.23 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CarboxypepD_reg 0.52 38.0 3.63e-01 100.0% 64.7%
3392309 221.1.1.76 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.51 44.0 3.93e-01 100.0% 93.0%
3295672 1.1.2.3 ↗ beta barrels › cradle loop barrel › RIFT-related › double psi › Barwin 0.50 38.0 3.77e-01 83.8% 81.4%
D2 medium residues 423-480
PDB
Domain cluster: representative
CATH (7)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5xgbA03 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.59 47.0 3.07e-01 87.9% 21.3%
3h4zB03 3.15.10.50 Alpha Beta › Super Roll › Bactericidal permeability-increasing protein; domain 1 › 0.56 43.0 2.98e-01 82.8% 74.3%
5tseA00 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.55 41.0 3.14e-01 79.3% 77.9%
4qbuA01 3.30.70.3290 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 39.0 3.04e-01 75.9% 79.1%
3ecrB03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.54 45.0 3.81e-01 94.8% 86.3%
6ka3A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.53 46.0 3.46e-01 98.3% 98.0%
3n54B03 3.30.300.210 Alpha Beta › 2-Layer Sandwich › GMP Synthetase; Chain A, domain 3 › Nutrient germinant receptor protein C, domain 3 0.52 41.0 3.13e-01 87.9% 66.4%
ECOD (10)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3319712 883.1.1.6 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1_N 0.58 44.0 3.35e-01 84.5% 72.4%
3820308 323.1.1.15 ↗ a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_C 0.57 48.0 3.29e-01 94.8% 100.0%
3283883 2002.5.1.1 ↗ a/b barrels › TIM beta/alpha-barrel › EAL domain › EAL domain › EAL 0.56 42.0 2.72e-01 81.0% 21.9%
3277839 331.3.1.11 ↗ a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.53 45.0 3.27e-01 91.4% 96.7%
4215667 7579.1.1.98 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › PAF-AH_p_II, PETase 0.53 46.0 2.81e-01 100.0% 64.2%
3205292 883.1.1.20 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › SMP_MUG190-like 0.53 42.0 2.79e-01 87.9% 78.0%
4008911 2002.1.1.60 ↗ a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › AP_endonuc_2 0.52 45.0 2.85e-01 100.0% 96.6%
3594393 331.4.1.0 ↗ a+b two layers › TBP-like › Kinase associated domain 1, KA1 › Kinase associated domain 1, KA1 0.52 42.0 3.77e-01 87.9% 86.3%
4811973 271.1.1.1 ↗ beta barrels › GFP-like › GFP-like › GFP-like › GFP 0.52 32.0 3.84e-01 82.8% 100.0%
4541164 3926.1.1.1 ↗ alpha bundles › V-type proton ATPase subunit D › V-type proton ATPase subunit D › V-type proton ATPase subunit D › ATP-synt_D 0.52 44.0 2.93e-01 93.1% 88.2%