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MW413353.1__QQO39126.1__SPHG1_05__00005

Bact-Vir

MW413353.1__QQO39126.1__SPHG1_05__00005

Identity

Accession:
MW413353 ↗
Kingdom:
phage

Quality

75.1 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Salmonella_phage_SPHG1

TaxID: 2801522

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 117-210
PDB
Domain cluster: rep: IMGVR_UViG_3300028564_000083-3300028564-Ga0255344_100350621__D115-222
CATH (25)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4trtA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 79.0 7.26e-01 100.0% 88.2%
6ap4B02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 79.0 6.80e-01 100.0% 84.4%
5wceA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.85 79.0 7.01e-01 100.0% 86.8%
1vpkA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.83 77.0 6.90e-01 100.0% 83.6%
5agvA02 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.82 75.0 6.67e-01 100.0% 88.5%
4trtA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 74.0 6.76e-01 100.0% 86.1%
3t0pA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 74.0 6.00e-01 100.0% 61.0%
1vpkA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.81 74.0 6.78e-01 100.0% 88.3%
6ptrB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 74.0 6.91e-01 100.0% 92.9%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.80 74.0 6.68e-01 100.0% 83.9%
3pweA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 72.0 6.58e-01 100.0% 86.2%
2avtB01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.79 71.0 5.81e-01 100.0% 63.4%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 67.0 6.32e-01 100.0% 92.9%
4trtA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.74 66.0 6.12e-01 100.0% 90.8%
1plqA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.72 65.0 4.70e-01 100.0% 45.3%
1jqlA03 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.71 63.0 5.85e-01 100.0% 90.8%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.70 62.0 4.62e-01 100.0% 44.7%
2ix2A01 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.66 58.0 4.51e-01 100.0% 49.3%
2z0lA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.66 58.0 4.12e-01 100.0% 44.6%
2yyzA02 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 37.0 4.40e-01 100.0% 98.3%
1vq0A02 3.90.1280.10 Alpha Beta › Alpha-Beta Complex › CBS domain Like › HSP33 redox switch-like 0.61 35.0 4.26e-01 77.7% 93.0%
7qu9A01 3.60.120.10 Alpha Beta › 4-Layer Sandwich › Anthranilate synthase › Anthranilate synthase 0.57 42.0 2.69e-01 76.6% 83.8%
7obmA01 2.130.10.120 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › Prolyl oligopeptidase, N-terminal domain 0.53 40.0 2.85e-01 80.9% 59.5%
2z1cB00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.52 31.0 3.40e-01 95.7% 73.0%
4g7xB00 3.30.1150.10 Alpha Beta › 2-Layer Sandwich › Fusion Protein Consisting Of Minor Coat Protein, Glycine Rich Linker, Tola, And A His Tag; Chain: A; Domain 2 › 0.51 34.0 3.39e-01 70.2% 98.0%
ECOD (29)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4995743 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.86 80.0 7.31e-01 100.0% 87.5%
4460376 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.86 80.0 7.29e-01 100.0% 87.5%
4995742 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.86 79.0 7.47e-01 98.9% 88.2%
3388280 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.85 79.0 7.25e-01 100.0% 86.7%
4591776 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.85 79.0 6.97e-01 100.0% 83.8%
4463778 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.85 79.0 7.19e-01 100.0% 88.3%
144176 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.85 78.0 7.07e-01 100.0% 87.9%
5978 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.83 77.0 7.00e-01 100.0% 87.0%
4069893 227.1.1.7 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta_2 0.83 77.0 6.91e-01 100.0% 85.6%
4876748 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.82 76.0 6.88e-01 100.0% 85.5%
2987540 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 75.0 6.65e-01 100.0% 80.0%
1549269 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 74.0 6.78e-01 100.0% 86.8%
4251800 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.81 74.0 6.64e-01 100.0% 80.8%
4407599 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 73.0 6.61e-01 100.0% 91.2%
4480621 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 73.0 6.68e-01 100.0% 87.5%
3015241 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.80 72.0 6.66e-01 100.0% 89.9%
2878151 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 72.0 6.60e-01 100.0% 88.4%
4650306 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.79 72.0 6.60e-01 100.0% 89.2%
2492033 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.78 70.0 6.15e-01 100.0% 85.0%
2392242 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.73 67.0 6.26e-01 100.0% 85.8%
4026069 227.1.1.6 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.71 64.0 5.66e-01 100.0% 88.1%
5980 227.1.1.9 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_PPF 0.70 63.0 5.96e-01 97.9% 83.6%
3791518 227.1.1.3 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp › DNA_pol3_beta 0.69 63.0 5.78e-01 100.0% 91.7%
4938286 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.60 43.0 4.00e-01 97.9% 60.0%
5028349 274.1.1.0 ↗ a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.58 42.0 3.90e-01 97.9% 60.0%
4966534 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.57 24.0 3.10e-01 100.0% 66.0%
3256917 4.8.1.2 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo_shadow 0.53 28.0 3.05e-01 76.6% 61.3%
3586881 101.1.8.1 ↗ alpha arrays › HTH › HTH › DNA breaking-rejoining enzymes › Phage_integrase 0.51 37.0 3.25e-01 76.6% 82.0%
3888413 7579.1.1.0 ↗ a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases 0.50 37.0 2.29e-01 80.9% 27.7%
D2 medium residues 1-112
PDB