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MW435566.1__QRI46347.1__X__00047

Bact-Vir

MW435566.1__QRI46347.1__X__00047

Identity

Accession:
MW435566 ↗
Kingdom:
phage

Quality

79.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Tsukubavirus› Xanthomonas_phage_X2

TaxID: 2511833

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-46
PDB
Domain cluster: representative
CATH (23)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ottB02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.68 54.0 3.26e-01 92.9% 31.0%
4a2lF02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.67 52.0 3.18e-01 92.9% 27.9%
1nijA01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.65 42.0 2.72e-01 95.2% 13.4%
1wmvA01 2.20.70.10 Mainly Beta › Single Sheet › Ubiquitin Ligase Nedd4; Chain: W; › 0.65 39.0 4.17e-01 83.3% 95.8%
4a2lB01 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.62 51.0 3.13e-01 97.6% 29.4%
1e0bA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.60 40.0 3.57e-01 90.5% 47.5%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 42.0 3.03e-01 83.3% 28.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 42.0 3.91e-01 83.3% 60.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.59 43.0 3.95e-01 85.7% 58.6%
2qruA00 3.40.50.1820 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain 0.57 44.0 2.63e-01 83.3% 21.7%
4jzsA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 38.0 2.66e-01 73.8% 94.9%
6guuA01 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.56 39.0 3.67e-01 90.5% 59.3%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 39.0 2.84e-01 76.2% 82.8%
3kl9A01 3.40.630.10 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Zn peptidases 0.54 48.0 2.94e-01 100.0% 33.6%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 43.0 3.09e-01 85.7% 40.0%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.53 35.0 3.32e-01 83.3% 51.9%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.52 41.0 3.98e-01 85.7% 87.0%
1vq8U00 2.30.170.20 Mainly Beta › Roll › Ribosomal Protein L24e; Chain: T; › Ribosomal protein L24 0.51 39.0 3.68e-01 85.7% 94.3%
2v90C00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.51 39.0 3.03e-01 85.7% 39.8%
2o8bA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.51 41.0 3.44e-01 100.0% 72.3%
3cihA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 2.94e-01 90.5% 78.9%
3k8aB00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.50 40.0 3.00e-01 88.1% 43.7%
1xf1A02 3.50.30.30 Alpha Beta › 3-Layer(bba) Sandwich › Glucose Oxidase; domain 1 › 0.50 39.0 2.71e-01 85.7% 87.2%
ECOD (25)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3214893 209.1.1.14 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 0.65 55.0 3.66e-01 97.6% 95.4%
3724346 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.63 48.0 3.03e-01 92.9% 24.1%
3244875 209.1.1.14 ↗ a+b complex topology › C-type lectin-like › C-type lectin-like › C-type lectin-like › PF29411 0.61 52.0 3.49e-01 97.6% 97.6%
3979842 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.60 44.0 4.08e-01 83.3% 60.0%
3977126 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.60 46.0 4.19e-01 85.7% 61.8%
25624 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.58 42.0 3.97e-01 81.0% 63.5%
3412961 2484.1.1.0 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.58 42.0 2.44e-01 78.6% 81.8%
3968342 4.1.1.45 ↗ beta barrels › SH3 › SH3 › SH3 › DUF903 0.57 43.0 4.07e-01 85.7% 66.0%
3310899 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.56 40.0 3.22e-01 90.5% 37.6%
3622024 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.56 40.0 3.57e-01 90.5% 53.3%
3391786 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 39.0 2.59e-01 90.5% 17.8%
3555043 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 39.0 3.27e-01 90.5% 42.7%
3441142 4.8.1.7 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › SAWADEE 0.55 40.0 3.64e-01 90.5% 58.2%
3856185 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 39.0 3.33e-01 90.5% 45.7%
3935116 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 39.0 3.41e-01 90.5% 49.2%
3913999 4.8.1.1 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › Chromo 0.55 39.0 2.93e-01 90.5% 30.5%
3483729 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 44.0 3.10e-01 88.1% 30.8%
3243108 389.3.1.0 ↗ few secondary structure elements › EGF-like › LDL receptor-like module › LDL receptor-like module 0.54 39.0 3.60e-01 100.0% 60.0%
3639738 2.1.1.6 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SSB 0.54 43.0 3.61e-01 85.7% 59.7%
3988064 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 46.0 3.89e-01 97.6% 81.4%
3593394 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 37.0 2.66e-01 78.6% 30.8%
4945859 230.1.1.5 ↗ a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › GCHY-1 0.51 35.0 2.73e-01 83.3% 66.9%
993431 3264.1.1.0 ↗ 0.50 38.0 2.56e-01 83.3% 23.1%
3595489 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.50 40.0 3.58e-01 90.5% 61.7%
4028916 241.15.1.0 ↗ a+b two layers › Type III secretory system chaperone-like › FP (Fbxo7/PI31) dimerization domain › FP (Fbxo7/PI31) dimerization domain 0.50 42.0 3.19e-01 100.0% 52.7%