←Back to structures
MW435566.1__QRI46354.1__X__00054
Bact-VirMW435566.1__QRI46354.1__X__00054
Identity
- Accession:
- MW435566 ↗
- Kingdom:
- phage
Quality
84.7
mean pLDDT
Taxonomy
TaxID: 2511833
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 3-78
Domain cluster:
representative
CATH (14)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ip4A02 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.64 | 49.0 | 5.19e-01 | 96.1% | 97.0% |
| 1svdM00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.59 | 49.0 | 4.41e-01 | 93.4% | 75.9% |
| 5mz2I00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.59 | 49.0 | 4.08e-01 | 93.4% | 59.7% |
| 3at0A02 | 2.60.40.1290 | Mainly Beta › Sandwich › Immunoglobulin-like › | 0.58 | 49.0 | 3.89e-01 | 98.7% | 66.7% |
| 5d8dD03 | 3.30.1490.20 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › ATP-grasp fold, A domain | 0.58 | 43.0 | 4.56e-01 | 96.1% | 97.0% |
| 3ffyA00 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.57 | 47.0 | 4.19e-01 | 100.0% | 63.4% |
| 6hgcA01 | 3.40.532.10 | Alpha Beta › 3-Layer(aba) Sandwich › Ubiquitin C-terminal Hydrolase UCH-l3 › Peptidase C12, ubiquitin carboxyl-terminal hydrolase | 0.57 | 50.0 | 3.77e-01 | 100.0% | 91.6% |
| 1burS00 | 3.30.190.10 | Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit | 0.56 | 47.0 | 4.09e-01 | 94.7% | 82.1% |
| 2wdtC02 | 3.30.1490.420 | Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Ubiquitin carboxyl-terminal hydrolase, domain 2 | 0.56 | 48.0 | 4.43e-01 | 100.0% | 98.0% |
| 1ou8A00 | 2.30.30.220 | Mainly Beta › Roll › SH3 type barrels. › SspB-like | 0.55 | 45.0 | 4.06e-01 | 90.8% | 82.1% |
| 5ao6A01 | 2.80.10.50 | Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › | 0.55 | 40.0 | 3.73e-01 | 77.6% | 77.9% |
| 2o3iA01 | 3.40.1610.10 | Alpha Beta › 3-Layer(aba) Sandwich › CV3147-like fold › CV3147-like domain | 0.54 | 45.0 | 3.33e-01 | 98.7% | 64.8% |
| 3nd1A02 | 3.30.950.10 | Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain | 0.53 | 45.0 | 4.06e-01 | 100.0% | 84.5% |
| 2arzA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.51 | 36.0 | 2.96e-01 | 75.0% | 69.3% |
ECOD (26)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3908452 | 3448.1.1.0 ↗ | beta duplicates or obligate multimers › Multivesicular body subunit 12B MABP domain › Multivesicular body subunit 12B MABP domain › Multivesicular body subunit 12B MABP domain | 0.65 | 38.0 | 3.08e-01 | 100.0% | 30.3% |
| 5019022 | 206.1.3.21 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › RimK | 0.65 | 51.0 | 3.56e-01 | 96.1% | 25.9% |
| 2797621 | 206.1.3.11 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › GSH-S_ATP | 0.63 | 52.0 | 4.00e-01 | 98.7% | 38.4% |
| 3799969 | 206.1.3.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C | 0.63 | 47.0 | 3.51e-01 | 97.4% | 30.0% |
| 3239028 | 206.1.3.9 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Synapsin_C | 0.61 | 48.0 | 3.58e-01 | 96.1% | 32.2% |
| None | — | 0.61 | 48.0 | 2.91e-01 | 96.1% | 12.2% | |
| 3959093 | 2003.1.10.0 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › PreATP-grasp domain | 0.61 | 48.0 | 2.96e-01 | 96.1% | 13.4% |
| None | — | 0.60 | 47.0 | 2.84e-01 | 96.1% | 11.6% | |
| 4967947 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.59 | 47.0 | 3.18e-01 | 98.7% | 21.3% |
| 4629131 | 9.29.1.1 ↗ | beta barrels › Lipocalins/Streptavidin › VirK › VirK › VirK | 0.59 | 51.0 | 4.34e-01 | 94.7% | 100.0% |
| 5041794 | 206.1.3.40 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATPgrasp_YheCD | 0.59 | 50.0 | 3.36e-01 | 98.7% | 24.4% |
| 2157197 | 302.2.1.1 ↗ | a+b two layers › Reverse ferredoxin › RuBisCO, small subunit › RuBisCO, small subunit › RuBisCO_small | 0.59 | 49.0 | 4.08e-01 | 93.4% | 59.7% |
| 3627741 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.58 | 49.0 | 3.42e-01 | 98.7% | 27.6% |
| None | — | 0.57 | 45.0 | 3.33e-01 | 97.4% | 31.4% | |
| 3802218 | 2003.1.5.66 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_11 | 0.56 | 48.0 | 3.36e-01 | 100.0% | 29.8% |
| 5083403 | 2005.1.1.16 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › Diphthami_syn_2 | 0.55 | 47.0 | 3.45e-01 | 98.7% | 82.5% |
| 3926721 | 10.32.1.0 ↗ | beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like | 0.54 | 47.0 | 3.75e-01 | 98.7% | 95.6% |
| 3988217 | 241.12.1.0 ↗ | a+b two layers › Type III secretory system chaperone-like › YktB/PF0168-like › YktB/PF0168-like | 0.54 | 47.0 | 3.53e-01 | 100.0% | 46.0% |
| 3535810 | 821.1.1.0 ↗ | a+b three layers › GIY-YIG endonuclease › GIY-YIG endonuclease › GIY-YIG endonuclease | 0.54 | 46.0 | 4.17e-01 | 100.0% | 79.1% |
| 4980312 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.53 | 44.0 | 3.32e-01 | 100.0% | 33.8% |
| 5075262 | 206.1.3.19 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › Dala_Dala_lig_C | 0.53 | 42.0 | 2.78e-01 | 96.1% | 19.7% |
| 5053262 | 206.1.3.8 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_3 | 0.52 | 43.0 | 3.01e-01 | 98.7% | 25.1% |
| 3994441 | 221.1.1.6 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA | 0.52 | 44.0 | 3.85e-01 | 96.1% | 80.0% |
| 3476921 | 7.1.1.10 ↗ | beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 | 0.52 | 45.0 | 4.10e-01 | 100.0% | 92.4% |
| 3715244 | 320.4.1.0 ↗ | a+b two layers › R3H domain-like › PUB domain › PUB domain | 0.52 | 44.0 | 3.38e-01 | 100.0% | 68.0% |
| 4024013 | 4954.1.1.1 ↗ | a+b complex topology › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › central helical domain in RNA-polymerase beta-prime subunit › RNA_pol_Rpb1_5 | 0.51 | 43.0 | 3.16e-01 | 100.0% | 45.1% |