←Back to structures
MW452941.1__QRV71437.1__MEP301_gp09__00009
Bact-VirMW452941.1__QRV71437.1__MEP301_gp09__00009
Identity
- Accession:
- MW452941 ↗
- Kingdom:
- phage
Quality
90.0
mean pLDDT
Cluster
View cluster (33 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-77
Domain cluster:
representative
CATH (21)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1ailA00 | 1.10.287.10 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › S15/NS1, RNA-binding | 0.67 | 37.0 | 3.86e-01 | 93.5% | 58.6% |
| 3nrtA00 | 6.20.350.10 | Special › Other non-globular › Actin; Chain A, domain 4 › | 0.65 | 49.0 | 4.61e-01 | 79.2% | 88.2% |
| 5ktaA00 | 3.40.630.30 | Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) | 0.64 | 47.0 | 3.56e-01 | 76.6% | 66.3% |
| 2yksA02 | 1.20.58.390 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Neurotransmitter-gated ion-channel transmembrane domain | 0.62 | 42.0 | 3.64e-01 | 70.1% | 93.2% |
| 4nleA02 | 1.10.275.60 | Mainly Alpha › Orthogonal Bundle › Fumarase C; Chain B, domain 1 › | 0.61 | 45.0 | 3.79e-01 | 79.2% | 55.3% |
| 4ywoA01 | 3.50.50.60 | Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain | 0.61 | 42.0 | 3.09e-01 | 72.7% | 28.3% |
| 1jvmB00 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.60 | 41.0 | 3.82e-01 | 71.4% | 77.0% |
| 3lkbA01 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.58 | 48.0 | 3.52e-01 | 90.9% | 93.5% |
| 1ks9A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.57 | 43.0 | 3.72e-01 | 81.8% | 56.9% |
| 1nt4A01 | 3.40.50.1240 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Phosphoglycerate mutase-like | 0.54 | 44.0 | 3.14e-01 | 88.3% | 69.7% |
| 5zjgA02 | 1.10.246.130 | Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › Gamma-glutamyltranspeptidase, large (L) subunit, C-terminal domain | 0.54 | 43.0 | 3.89e-01 | 89.6% | 80.4% |
| 3unoE00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.54 | 44.0 | 3.45e-01 | 89.6% | 77.8% |
| 1ikpA02 | 3.90.1350.10 | Alpha Beta › Alpha-Beta Complex › Exotoxin A, middle domain › Exotoxin A, middle domain | 0.53 | 38.0 | 3.07e-01 | 77.9% | 58.9% |
| 3bt5A00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.53 | 43.0 | 3.49e-01 | 90.9% | 66.9% |
| 1s3qG00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 43.0 | 3.36e-01 | 88.3% | 44.2% |
| 6yz2A01 | 1.20.120.350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Voltage-gated potassium channels. Chain C | 0.52 | 40.0 | 3.40e-01 | 80.5% | 52.5% |
| 5ux1D00 | 1.20.1260.10 | Mainly Alpha › Up-down Bundle › Ferritin › Ferritin, core subunit, four-helix bundle | 0.52 | 44.0 | 3.27e-01 | 93.5% | 79.2% |
| 5n13A00 | 1.20.920.10 | Mainly Alpha › Up-down Bundle › Histone Acetyltransferase; Chain A › Bromodomain-like | 0.51 | 40.0 | 3.61e-01 | 84.4% | 92.6% |
| 3v9rA00 | 1.10.20.10 | Mainly Alpha › Orthogonal Bundle › Histone, subunit A › Histone, subunit A | 0.51 | 40.0 | 3.87e-01 | 87.0% | 92.0% |
| 2ph5A02 | 3.30.360.30 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › homospermidine synthase like | 0.51 | 38.0 | 2.56e-01 | 79.2% | 70.9% |
| 2hgkA01 | 1.20.1440.40 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › YqcC-like | 0.51 | 40.0 | 3.68e-01 | 87.0% | 96.2% |
ECOD (17)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3605990 | 5054.1.1.70 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Yip1 | 0.69 | 54.0 | 3.99e-01 | 83.1% | 83.7% |
| 3594000 | 5054.1.1.0 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels | 0.68 | 53.0 | 3.93e-01 | 83.1% | 83.2% |
| 3277203 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.67 | 53.0 | 4.27e-01 | 87.0% | 56.8% |
| 3715674 | 142.1.1.0 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors | 0.66 | 51.0 | 4.90e-01 | 84.4% | 96.7% |
| 3481034 | 4009.1.1.0 ↗ | alpha bundles › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins › alpha-helical domain in AF1104-like proteins | 0.60 | 47.0 | 4.69e-01 | 87.0% | 90.0% |
| 3890165 | 219.1.1.24 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Herpes_teg_N | 0.60 | 48.0 | 3.52e-01 | 89.6% | 91.6% |
| 3787527 | 142.3.1.1 ↗ | alpha complex topology › Sigma2 domain-like › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Mitochondrial morphogenesis protein Sld7 C-terminal domain › Sld7_C | 0.59 | 48.0 | 4.69e-01 | 88.3% | 97.6% |
| 3997386 | 4953.1.1.33 ↗ | beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › PF31020 | 0.59 | 44.0 | 3.94e-01 | 80.5% | 99.1% |
| 3408014 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.59 | 45.0 | 3.29e-01 | 85.7% | 90.4% |
| 3264850 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.57 | 45.0 | 4.71e-01 | 89.6% | 98.6% |
| 5067508 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.57 | 43.0 | 3.59e-01 | 80.5% | 84.4% |
| 3725764 | 5050.1.1.10 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_2 | 0.56 | 41.0 | 2.95e-01 | 79.2% | 58.8% |
| 3742581 | 6147.1.1.2 ↗ | alpha arrays › C-terminal domain of Dbr1 › C-terminal domain of Dbr1 › C-terminal domain of Dbr1 › DBR1 | 0.52 | 38.0 | 3.63e-01 | 77.9% | 100.0% |
| 3393218 | 150.1.1.21 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin › MTABC_N | 0.51 | 40.0 | 3.07e-01 | 88.3% | 72.3% |
| 3960634 | 150.1.2.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Heme oxygenase/Ribonucleotide reductase | 0.50 | 38.0 | 2.93e-01 | 81.8% | 40.6% |
| 5035598 | 3930.1.1.3 ↗ | alpha bundles › Helical bundle insertion in helicase domains › Helical bundle in Hef helicase › Helical bundle in Hef helicase › RNA_helicase_helical | 0.50 | 39.0 | 3.33e-01 | 83.1% | 72.0% |
| 4501825 | 6056.1.1.2 ↗ | alpha arrays › SP1917-like › SP1917-like › SP1917-like › PrmC_N | 0.50 | 38.0 | 3.85e-01 | 83.1% | 84.0% |
D2
medium
residues 78-159
Domain cluster:
representative
CATH (12)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1tx3D00 | 3.40.600.10 | Alpha Beta › 3-Layer(aba) Sandwich › ECO RV Endonuclease; Chain A › DNA mismatch repair MutH/Restriction endonuclease, type II | 0.64 | 52.0 | 3.83e-01 | 92.7% | 82.8% |
| 4ic1D00 | 3.90.320.10 | Alpha Beta › Alpha-Beta Complex › Lambda Exonuclease; Chain A › | 0.62 | 45.0 | 3.40e-01 | 78.0% | 41.7% |
| 3m6wA03 | 2.30.130.60 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › | 0.57 | 42.0 | 4.52e-01 | 96.3% | 94.0% |
| 2ar1A00 | 3.10.590.10 | Alpha Beta › Roll › ph1033 like fold › ph1033 like domains | 0.57 | 47.0 | 3.91e-01 | 95.1% | 95.5% |
| 4ca1B02 | 2.60.210.10 | Mainly Beta › Sandwich › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A › Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 0.55 | 40.0 | 3.52e-01 | 80.5% | 93.2% |
| 3thxB01 | 3.40.1170.10 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › DNA repair protein MutS, domain I | 0.54 | 38.0 | 3.36e-01 | 75.6% | 85.5% |
| 6xwlE02 | 3.10.580.10 | Alpha Beta › Roll › CBS-domain › CBS-domain | 0.53 | 43.0 | 3.71e-01 | 96.3% | 54.7% |
| 3djlA03 | 2.40.110.20 | Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › | 0.52 | 44.0 | 3.70e-01 | 98.8% | 90.4% |
| 3vnrA01 | 3.40.50.12780 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › ANL, N-terminal domain | 0.52 | 44.0 | 2.87e-01 | 96.3% | 37.9% |
| 4boqA00 | 3.90.70.80 | Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › | 0.52 | 40.0 | 3.14e-01 | 89.0% | 38.9% |
| 4dunA01 | 3.10.310.10 | Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 | 0.50 | 44.0 | 3.86e-01 | 100.0% | 85.0% |
| 2oap202 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.50 | 43.0 | 3.06e-01 | 98.8% | 78.0% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4284098 | 2008.1.1.198 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › DUF6998 | 0.71 | 58.0 | 5.01e-01 | 95.1% | 56.9% |
| 295937 | 2008.1.1.54 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › R-HINP1I | 0.67 | 56.0 | 4.00e-01 | 91.5% | 74.9% |
| 5005296 | 2008.1.1.232 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › PF25941 | 0.65 | 54.0 | 4.85e-01 | 93.9% | 75.8% |
| 3730987 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 55.0 | 4.42e-01 | 98.8% | 70.3% |
| 3721927 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.64 | 52.0 | 4.12e-01 | 91.5% | 65.6% |
| 4965468 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.61 | 50.0 | 4.37e-01 | 98.8% | 60.0% |
| 4013185 | 1.1.9.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain | 0.61 | 51.0 | 4.27e-01 | 96.3% | 93.3% |
| 3289010 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.60 | 54.0 | 4.56e-01 | 97.6% | 66.2% |
| 3852890 | 10.12.1.47 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Tet_JBP | 0.59 | 51.0 | 3.25e-01 | 95.1% | 79.9% |
| 3947609 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.59 | 44.0 | 2.99e-01 | 80.5% | 58.7% |
| 4330983 | 1.1.9.11 ↗ | beta barrels › cradle loop barrel › RIFT-related › PUA domain › TruB-C_2 | 0.58 | 41.0 | 4.52e-01 | 95.1% | 95.4% |
| 3880583 | 10.12.1.47 ↗ | beta sandwiches › jelly-roll › Double-stranded beta-helix › Double-stranded beta-helix › Tet_JBP | 0.58 | 50.0 | 3.18e-01 | 96.3% | 74.9% |
| 3493539 | 282.1.1.0 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain | 0.58 | 50.0 | 4.30e-01 | 98.8% | 63.7% |
| 5051587 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.57 | 49.0 | 3.44e-01 | 98.8% | 87.6% |
| 3262537 | 282.1.1.1 ↗ | a+b duplicates or obligate multimers › CBS-domain › CBS-domain › CBS-domain › CBS | 0.57 | 49.0 | 4.02e-01 | 97.6% | 59.4% |
| 4025905 | 219.1.1.0 ↗ | a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases | 0.56 | 43.0 | 3.11e-01 | 81.7% | 78.3% |
| 4976813 | 2492.1.1.0 ↗ | a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like | 0.55 | 46.0 | 3.90e-01 | 98.8% | 83.3% |
| 5053147 | 2004.1.1.42 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE | 0.54 | 47.0 | 2.93e-01 | 98.8% | 43.6% |
| 4025299 | 2006.1.6.0 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › vWA-like | 0.54 | 40.0 | 2.87e-01 | 78.0% | 90.0% |
| 3850369 | 11.1.1.99 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › V-set | 0.51 | 36.0 | 3.34e-01 | 75.6% | 65.5% |
| 3905963 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 34.0 | 3.20e-01 | 72.0% | 55.5% |
| 1234535 | 4052.1.1.1 ↗ | beta complex topology › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA dehydrogenase middle domain-like › Acyl-CoA_dh_M | 0.50 | 40.0 | 3.80e-01 | 92.7% | 99.1% |
| 3181848 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.50 | 36.0 | 2.91e-01 | 78.0% | 68.7% |