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MW452941.1__QRV71477.1__MEP301_gp49__00049

Bact-Vir

MW452941.1__QRV71477.1__MEP301_gp49__00049

Identity

Accession:
MW452941 ↗
Kingdom:
phage

Quality

78.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Methylophilales_phage_MEP301

TaxID: 2806696

Cluster

View cluster (4 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-109
PDB
Domain cluster: rep: MZ503612.1__QYC52359.1__X__00001__D31-105
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1p65A00 6.10.140.90 Special › Helix non-globular › Helix Hairpins › 0.60 35.0 3.64e-01 96.6% 59.6%
2e1mA05 1.10.405.10 Mainly Alpha › Orthogonal Bundle › Guanine Nucleotide Dissociation Inhibitor; domain 1 › Guanine Nucleotide Dissociation Inhibitor, domain 1 0.56 37.0 3.22e-01 89.8% 44.0%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.55 37.0 3.50e-01 74.6% 57.7%
2d5wA02 3.90.76.10 Alpha Beta › Alpha-Beta Complex › Dipeptide-binding Protein; domain 1 › Dipeptide-binding Protein; Domain 1 0.55 38.0 3.14e-01 74.6% 88.0%
6tuaA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.54 44.0 3.14e-01 93.2% 66.0%
4id8A00 3.30.70.20 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.54 37.0 3.67e-01 72.9% 67.7%
3gdzB00 3.30.1360.70 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Arginyl tRNA synthetase N-terminal domain 0.54 43.0 3.68e-01 94.9% 89.7%
1wpwA00 3.40.718.10 Alpha Beta › 3-Layer(aba) Sandwich › Isopropylmalate Dehydrogenase › Isopropylmalate Dehydrogenase 0.53 43.0 2.84e-01 100.0% 64.0%
1h2iA01 3.30.390.80 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › DNA repair protein Rad52/59/22 0.52 34.0 2.58e-01 96.6% 26.4%
3ewiB00 3.40.50.1000 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HAD superfamily/HAD-like 0.51 41.0 3.20e-01 98.3% 97.5%
1nyrA03 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.50 40.0 2.65e-01 94.9% 83.2%
2jiiA02 1.10.510.10 Mainly Alpha › Orthogonal Bundle › Transferase(Phosphotransferase); domain 1 › Transferase(Phosphotransferase) domain 1 0.50 41.0 2.95e-01 96.6% 86.5%
ECOD (20)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3617448 304.7.1.0 ↗ a+b two layers › Alpha-beta plaits › Protease propeptides/inhibitors › Protease propeptides/inhibitors 0.61 41.0 4.12e-01 81.4% 68.3%
7688 808.1.1.2 ↗ a+b duplicates or obligate multimers › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arterivirus nucleocapsid protein › Arteri_nucleo 0.60 35.0 3.64e-01 96.6% 59.6%
3512849 304.24.1.0 ↗ a+b two layers › Alpha-beta plaits › EF-G C-terminal domain-like › EF-G C-terminal domain-like 0.58 36.0 3.64e-01 74.6% 61.7%
5054779 2006.1.4.3 ↗ a/b three-layered sandwiches › HAD domain-like › HAD domain-related › PIN domain-like › NYN 0.58 47.0 3.78e-01 96.6% 90.2%
3261727 101.1.2.111 ↗ alpha arrays › HTH › HTH › winged helix domain › RQC 0.55 46.0 3.84e-01 100.0% 83.5%
3538512 3892.1.1.0 ↗ alpha bundles › Transhydrogeanse domain II › Transhydrogeanse domain II › Transhydrogeanse domain II 0.55 42.0 3.15e-01 84.7% 58.7%
2841967 5089.1.1.7 ↗ beta complex topology › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › Membrane attack complex/perforin (MACPF) and cholesterol-dependent cytolysin (CDC) domains › PF26164 0.55 43.0 2.93e-01 89.8% 56.2%
4962054 375.1.1.345 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related › DUF7837 0.55 35.0 3.89e-01 81.4% 86.7%
5053763 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.54 43.0 3.89e-01 94.9% 73.3%
3690933 304.9.1.0 ↗ a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD 0.54 37.0 3.17e-01 74.6% 42.9%
4553926 310.1.1.2 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arginyl-tRNA synthetase (ArgRS), N-terminal 'additional' domain › Arg_tRNA_synt_N 0.54 44.0 3.69e-01 94.9% 84.5%
5065699 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.53 30.0 3.29e-01 81.4% 66.7%
3257886 242.1.1.0 ↗ a+b two layers › Homing endonucleases-like › Homing endonucleases › Homing endonucleases 0.52 43.0 3.30e-01 94.9% 91.0%
3445779 101.1.2.245 ↗ alpha arrays › HTH › HTH › winged helix domain › PORR 0.52 44.0 3.57e-01 100.0% 65.6%
3775826 4016.1.1.0 ↗ alpha bundles › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase › alpha-helical domain in type II DNA topoisomerase 0.52 39.0 3.07e-01 86.4% 59.3%
4945179 101.1.2.0 ↗ alpha arrays › HTH › HTH › winged helix domain 0.51 36.0 2.89e-01 79.7% 40.7%
3627409 6166.1.1.1 ↗ alpha bundles › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › N-terminal domain of Delta(14)-sterol reductase, MaSR1 › ERG4_ERG24 0.51 40.0 2.80e-01 86.4% 97.5%
4934807 1.1.3.2 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 35.0 3.27e-01 71.2% 69.3%
4967269 1.1.3.0 ↗ beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 31.0 3.24e-01 91.5% 63.6%
4956135 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.51 31.0 3.12e-01 72.9% 55.0%