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MW460245.1__QRE00096.1__X__00053

Bact-Vir

MW460245.1__QRE00096.1__X__00053

Identity

Accession:
MW460245 ↗
Kingdom:
phage

Quality

67.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-100
PDB
Domain cluster: representative
CATH (50)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2anrA02 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.73 57.0 6.04e-01 89.4% 93.3%
2v8qA01 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.72 53.0 5.27e-01 78.8% 100.0%
3gr5A02 3.30.1370.120 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.71 53.0 5.83e-01 88.2% 97.1%
1ab8A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.71 59.0 4.61e-01 89.4% 54.8%
3vn5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.71 54.0 5.97e-01 83.5% 100.0%
1azsA00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.71 59.0 4.53e-01 90.6% 46.3%
1aisA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.70 56.0 5.61e-01 85.9% 88.5%
3dpuB03 3.30.310.200 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › 0.70 58.0 5.37e-01 89.4% 83.3%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 55.0 4.70e-01 89.4% 97.9%
2yqrA01 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.67 59.0 5.54e-01 97.6% 97.1%
2nn6G03 3.30.1370.10 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › K Homology domain, type 1 0.67 48.0 4.74e-01 83.5% 72.7%
4paaA04 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.66 52.0 4.71e-01 85.9% 68.4%
3girA02 3.30.70.1400 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Aminomethyltransferase beta-barrel domains 0.66 51.0 5.16e-01 84.7% 94.2%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.65 51.0 5.51e-01 87.1% 100.0%
2ehbD00 3.30.310.80 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Kinase associated domain 1, KA1 0.65 50.0 4.46e-01 84.7% 73.8%
1jyoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.63 49.0 4.31e-01 84.7% 63.1%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 53.0 4.48e-01 94.1% 100.0%
1fnoA02 3.30.70.360 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.62 53.0 4.87e-01 92.9% 88.2%
3qwmA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.62 46.0 4.02e-01 77.6% 74.0%
4i8oA01 3.30.310.240 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Bacterial toxin RNase RnlA/LsoA, N-terminal domain 0.61 46.0 4.57e-01 81.2% 98.9%
2jhnA01 3.30.310.20 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › DNA-3-methyladenine glycosylase AlkA, N-terminal domain 0.61 52.0 4.81e-01 97.6% 86.7%
1vw4F02 3.90.930.12 Alpha Beta › Alpha-Beta Complex › Outer Surface Protein A; domain 3 › Ribosomal protein L6 0.61 48.0 4.69e-01 84.7% 78.3%
1j3wC00 3.30.450.30 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › Dynein light chain 2a, cytoplasmic 0.61 45.0 3.88e-01 78.8% 100.0%
4p79A00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.60 55.0 4.27e-01 100.0% 74.6%
3hbxA03 3.90.1150.160 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.59 47.0 4.68e-01 88.2% 84.1%
1tuoA04 3.30.310.50 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › Alpha-D-phosphohexomutase, C-terminal domain 0.59 41.0 4.62e-01 84.7% 95.4%
3oxnA01 3.40.190.10 Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II 0.59 50.0 4.48e-01 90.6% 93.9%
5yk4A04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.58 49.0 4.17e-01 90.6% 85.3%
2wm1A00 3.20.20.140 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Metal-dependent hydrolases 0.58 43.0 2.98e-01 81.2% 99.4%
2p92A00 3.30.70.1490 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Cysteine protease Prp 0.58 48.0 4.69e-01 92.9% 81.1%
1e3hA03 3.30.230.70 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S5; domain 2 › GHMP Kinase, N-terminal domain 0.58 49.0 3.66e-01 92.9% 66.2%
3n75A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.57 47.0 3.78e-01 91.8% 56.5%
1qy9A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.57 38.0 3.17e-01 70.6% 92.6%
2bhoA00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.57 40.0 3.76e-01 84.7% 58.2%
1ewqA04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.57 47.0 4.03e-01 90.6% 86.0%
1x31C02 3.30.70.1520 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Heterotetrameric sarcosine oxidase 0.57 44.0 4.55e-01 88.2% 90.0%
1q8bA00 3.30.70.100 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.56 44.0 4.30e-01 85.9% 83.9%
1c8zA00 3.20.90.10 Alpha Beta › Alpha-Beta Barrel › Tubby Protein; Chain A › Tubby Protein; Chain A 0.55 43.0 3.12e-01 87.1% 90.2%
4p72A04 3.30.56.10 Alpha Beta › 2-Layer Sandwich › Phenylalanyl-tRNA Synthetase; Chain B, domain 1 › 0.55 43.0 4.47e-01 85.9% 94.7%
3thxB04 1.10.1420.10 Mainly Alpha › Orthogonal Bundle › MutS, DNA mismatch repair protein; Chain A, domain 3 › 0.55 45.0 3.96e-01 91.8% 92.2%
2dfkC02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.54 41.0 3.49e-01 81.2% 66.0%
2y23A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 38.0 3.56e-01 85.9% 60.6%
6le1A01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.53 39.0 4.22e-01 81.2% 100.0%
2r7rA05 1.10.357.80 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › 0.53 37.0 2.90e-01 92.9% 34.7%
2codA01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.52 36.0 3.46e-01 70.6% 75.0%
3b0xA03 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.52 38.0 3.61e-01 78.8% 78.1%
6l3tA01 1.20.1440.80 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Gap junction channel protein cysteine-rich domain 0.52 46.0 3.52e-01 100.0% 66.3%
3hr8A02 3.30.250.10 Alpha Beta › 2-Layer Sandwich › Rec A Protein; domain 2 › RecA protein, C-terminal domain 0.52 37.0 3.93e-01 87.1% 88.0%
2jxpA01 3.30.160.150 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Lipoprotein like domain 0.51 45.0 3.77e-01 95.3% 86.5%
3tfmA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 36.0 3.30e-01 71.8% 67.9%
ECOD (61)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
None 0.75 41.0 3.28e-01 74.1% 31.3%
4412642 321.1.1.6 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase 0.74 64.0 4.05e-01 94.1% 22.9%
4251107 321.1.1.6 a+b two layers › Glutamine synthetase-like › Glutamine synthetase/guanido kinase › Glutamine synthetase/guanido kinase › Pup_ligase 0.73 65.0 4.12e-01 97.6% 23.7%
4934098 304.19.1.1 a+b two layers › Alpha-beta plaits › eIF-2-alpha, C-terminal domain › eIF-2-alpha, C-terminal domain › EIF_2_alpha 0.73 59.0 5.95e-01 85.9% 89.4%
4995243 3501.1.1.1 a+b two layers › protein PCC1 › protein PCC1 › protein PCC1 › Pcc1 0.72 59.0 6.29e-01 92.9% 100.0%
4193772 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.71 56.0 5.69e-01 85.9% 95.3%
4311175 304.48.1.0 a+b two layers › Alpha-beta plaits › Adenylyl and guanylyl cyclase catalytic domain-like › Adenylyl and guanylyl cyclase catalytic domain-like 0.71 60.0 4.19e-01 92.9% 33.3%
3739666 247.1.1.38 a+b four layers › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › Metallo-hydrolase/oxidoreductase › CPSF73-100_C 0.70 59.0 5.83e-01 91.8% 94.4%
3182505 331.1.1.13 a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like › CPSF73-100_C 0.69 56.0 5.32e-01 88.2% 98.0%
4346967 331.2.1.8 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain › CPSF73-100_C 0.69 58.0 5.76e-01 92.9% 97.8%
3742793 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.69 46.0 3.06e-01 74.1% 19.0%
4024018 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.67 53.0 4.61e-01 84.7% 66.9%
3737618 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.67 52.0 4.53e-01 83.5% 70.5%
3939983 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.66 53.0 4.66e-01 85.9% 88.8%
3926287 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.66 47.0 3.10e-01 84.7% 18.5%
3587052 331.2.1.0 a+b two layers › TBP-like › Phosphoglucomutase, C-terminal domain › Phosphoglucomutase, C-terminal domain 0.65 49.0 4.74e-01 81.2% 86.3%
3239541 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.65 51.0 4.47e-01 84.7% 88.0%
3264278 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.64 50.0 4.32e-01 83.5% 69.2%
3733471 3016.1.1.0 a+b two layers › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases › C-terminal domain in some PLP-dependent transferases 0.64 49.0 4.69e-01 83.5% 82.0%
3599103 601.23.1.1 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.63 50.0 3.37e-01 85.9% 28.3%
4983266 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.63 48.0 4.15e-01 81.2% 79.2%
3640935 3543.1.1.4 alpha complex topology › Acid-activated urea channel › Acid-activated urea channel › Acid-activated urea channel › DUF716 0.62 56.0 4.01e-01 97.6% 47.2%
4027452 4955.1.1.0 a+b two layers › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit › permuted ferredoxin-like domain in yeast RNA-polymerase beta-prime subunit 0.62 50.0 4.76e-01 88.2% 78.0%
3281830 223.2.1.5 a+b three layers › Profilin-like › profilin-like › profilin-like › Robl_LC7 0.62 49.0 4.20e-01 85.9% 76.3%
4215372 318.1.1.1 a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal_L6 0.61 51.0 4.75e-01 89.4% 77.1%
3765856 3937.1.1.1 alpha bundles › Connexin 26 › Connexin 26 › Connexin 26 › Connexin 0.60 49.0 3.65e-01 87.1% 92.4%
3254218 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.60 46.0 3.92e-01 82.4% 91.4%
3708219 331.23.1.4 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain › CPSF100_C 0.60 45.0 4.82e-01 80.0% 100.0%
3282302 304.28.1.0 a+b two layers › Alpha-beta plaits › Ferredoxin domains in multidrug efflux transporter › Multidrug efflux transporter AcrB pore domain 0.60 45.0 4.68e-01 88.2% 87.5%
3508939 220.1.1.13 beta barrels › PH domain-like › PH domain-like › PH domain-like › DCP1 0.60 43.0 3.76e-01 76.5% 93.1%
3831261 844.1.1.5 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.59 48.0 3.53e-01 88.2% 100.0%
3314271 223.2.1.32 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_2 0.59 44.0 3.73e-01 77.6% 94.8%
3602012 331.23.1.0 a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.58 43.0 4.59e-01 77.6% 97.1%
3323887 844.1.1.5 beta barrels › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › Transcriptional factor tubby, C-terminal domain › DUF3527 0.58 44.0 3.12e-01 83.5% 98.9%
4020541 601.23.1.1 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_III 0.57 51.0 3.41e-01 96.5% 40.3%
4978622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 42.0 4.01e-01 77.6% 89.0%
3748070 220.1.1.130 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH_21 0.57 39.0 3.49e-01 70.6% 65.8%
3955815 323.1.1.8 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › WS_DGAT_cat 0.57 45.0 3.50e-01 88.2% 67.5%
3502130 327.11.2.3 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_6 0.56 45.0 4.00e-01 88.2% 65.6%
4109850 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.56 48.0 3.27e-01 92.9% 41.3%
3275677 220.1.1.66 beta barrels › PH domain-like › PH domain-like › PH domain-like › SOS1_NGEF_PH 0.56 40.0 3.27e-01 75.3% 63.7%
3670532 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.56 48.0 3.18e-01 92.9% 57.5%
4007645 304.146.1.0 a+b two layers › Alpha-beta plaits › Uncharacterized protein yjdK › Uncharacterized protein yjdK 0.55 42.0 4.13e-01 81.2% 76.7%
999861 304.4.1.4 a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel › ABM 0.55 44.0 4.26e-01 88.2% 78.4%
5047050 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.55 42.0 3.85e-01 81.2% 90.9%
3277776 7523.1.1.0 a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II 0.55 44.0 4.00e-01 89.4% 90.0%
3742155 109.21.1.2 alpha superhelices › Repetitive alpha hairpins › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nucleoporin NUP85/Nucleoporin NUP145 C-terminal domain › Nup96 0.55 37.0 2.24e-01 87.1% 10.2%
4650117 502.1.1.1 a+b two layers › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › Anti-LPS factor/recA domain › RecA_C 0.54 39.0 4.03e-01 84.7% 81.2%
3629452 101.1.2.98 alpha arrays › HTH › HTH › winged helix domain › CDT1 0.53 48.0 3.71e-01 98.8% 82.7%
3443644 601.23.1.4 alpha bundles › Four-helical up-and-down bundle › DNA repair protein MutS, domain III › DNA repair protein MutS, domain III › MutS_IV, MutS_III 0.53 45.0 3.05e-01 94.1% 59.0%
3548074 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 39.0 3.47e-01 77.6% 73.3%
3476418 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 40.0 3.41e-01 80.0% 64.4%
3291365 378.1.1.0 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases 0.53 38.0 3.37e-01 77.6% 88.3%
3570843 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.53 48.0 4.42e-01 100.0% 91.8%
4544563 3561.1.1.1 a+b complex topology › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Mediator of RNA polymerase II transcription subunit 17 › Med17 0.52 43.0 2.76e-01 95.3% 23.5%
4305743 5.1.4.100 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Med16_N 0.52 39.0 2.48e-01 78.8% 88.4%
3632803 237.1.1.21 a+b complex topology › ADP-ribosylation › ADP-ribosylation › ADP-ribosylation › ADPRTs_Tse2 0.52 44.0 3.74e-01 95.3% 67.6%
4348945 220.1.1.1 beta barrels › PH domain-like › PH domain-like › PH domain-like › PH 0.52 38.0 3.46e-01 78.8% 70.0%
4977899 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.51 37.0 3.43e-01 76.5% 78.2%
3875632 5054.1.1.63 alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans, YVC1_C 0.50 45.0 2.95e-01 100.0% 66.6%
5081361 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.50 35.0 3.37e-01 72.9% 73.0%