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MW460245.1__QRE00155.1__X__00112
Bact-VirMW460245.1__QRE00155.1__X__00112
Identity
- Accession:
- MW460245 ↗
- Kingdom:
- phage
Quality
76.3
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 1-79
Domain cluster:
representative
CATH (35)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ye6A02 | 1.10.10.2420 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › | 0.75 | 53.0 | 6.08e-01 | 83.5% | 100.0% |
| 1l8qA03 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.74 | 51.0 | 4.59e-01 | 70.9% | 61.7% |
| 2nogB02 | 1.10.10.60 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Homeodomain-like | 0.68 | 48.0 | 5.09e-01 | 89.9% | 84.3% |
| 2ddhA04 | 1.20.140.10 | Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 | 0.68 | 41.0 | 3.41e-01 | 100.0% | 36.4% |
| 3h20A04 | 1.10.1240.50 | Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › | 0.67 | 46.0 | 4.45e-01 | 77.2% | 62.9% |
| 1zc6A02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.67 | 42.0 | 3.29e-01 | 78.5% | 31.4% |
| 1a41A02 | 1.20.120.380 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Type 1-topoisomerase catalytic fragment, domain 2 | 0.65 | 56.0 | 5.34e-01 | 98.7% | 94.7% |
| 3b9qA01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.63 | 48.0 | 4.65e-01 | 83.5% | 73.0% |
| 2f8lA01 | 1.10.150.470 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.62 | 50.0 | 5.05e-01 | 88.6% | 100.0% |
| 2lrmA00 | 1.10.890.30 | Mainly Alpha › Orthogonal Bundle › 10k-s Protein, Hypothetical Protein A; Chain A › YmgD protein | 0.60 | 44.0 | 4.33e-01 | 77.2% | 96.4% |
| 1j1vA00 | 1.10.1750.10 | Mainly Alpha › Orthogonal Bundle › Chromosomal Replication Initiator Protein Dnaa; Chain: A; › DnaA protein, C-terminal DNA-binding domain | 0.60 | 45.0 | 4.32e-01 | 89.9% | 68.1% |
| 6jlzA01 | 1.20.120.1070 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Translation initiation factor eIF-2B, N-terminal domain | 0.60 | 52.0 | 4.75e-01 | 100.0% | 82.4% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.60 | 47.0 | 4.57e-01 | 87.3% | 85.7% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.59 | 44.0 | 4.42e-01 | 81.0% | 86.4% |
| 7kypB01 | 1.10.3470.10 | Mainly Alpha › Orthogonal Bundle › ABC transporter involved in vitamin B12 uptake, BtuC › ABC transporter involved in vitamin B12 uptake, BtuC | 0.59 | 50.0 | 3.54e-01 | 98.7% | 77.6% |
| 2a0uB01 | 1.20.120.420 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › translation initiation factor eif-2b, domain 1 | 0.58 | 51.0 | 4.11e-01 | 100.0% | 55.0% |
| 2zopA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.58 | 46.0 | 4.12e-01 | 87.3% | 98.2% |
| 2c0kB00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.57 | 44.0 | 3.65e-01 | 84.8% | 94.6% |
| 3bz6A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 45.0 | 4.40e-01 | 89.9% | 92.2% |
| 4gkfA00 | 1.10.520.30 | Mainly Alpha › Orthogonal Bundle › Peroxidase; domain 1 › AF1862-like domain | 0.56 | 44.0 | 3.67e-01 | 100.0% | 47.3% |
| 3iieB03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.55 | 38.0 | 3.78e-01 | 72.2% | 98.8% |
| 2ajrA01 | 3.40.1190.20 | Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase | 0.54 | 42.0 | 2.96e-01 | 83.5% | 89.8% |
| 3dzaA01 | 1.20.120.1940 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YfdX protein domain | 0.54 | 43.0 | 3.79e-01 | 84.8% | 73.5% |
| 2zj8A04 | 1.10.150.20 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › 5' to 3' exonuclease, C-terminal subdomain | 0.54 | 33.0 | 3.60e-01 | 70.9% | 80.7% |
| 2i53A02 | 1.10.472.10 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like | 0.54 | 40.0 | 3.60e-01 | 81.0% | 56.8% |
| 1oe8A02 | 1.20.1050.10 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.53 | 37.0 | 3.21e-01 | 72.2% | 60.5% |
| 8ciwB01 | 1.10.540.10 | Mainly Alpha › Orthogonal Bundle › Butyryl-Coa Dehydrogenase, subunit A; domain 1 › Acyl-CoA dehydrogenase/oxidase, N-terminal domain | 0.53 | 43.0 | 3.88e-01 | 93.7% | 71.3% |
| 3m6zA03 | 1.10.150.740 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › | 0.52 | 34.0 | 3.62e-01 | 100.0% | 75.7% |
| 2de2A01 | 3.40.190.10 | Alpha Beta › 3-Layer(aba) Sandwich › D-Maltodextrin-Binding Protein; domain 2 › Periplasmic binding protein-like II | 0.52 | 42.0 | 3.30e-01 | 93.7% | 78.9% |
| 2pbeA02 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.51 | 45.0 | 3.91e-01 | 100.0% | 77.0% |
| 3vygE00 | 1.10.472.20 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Nitrile hydratase, beta subunit | 0.51 | 36.0 | 2.87e-01 | 72.2% | 55.6% |
| 1e2aA00 | 1.20.58.80 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit | 0.50 | 38.0 | 3.46e-01 | 78.5% | 81.4% |
| 2a6hF01 | 1.20.120.1810 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.50 | 45.0 | 3.44e-01 | 100.0% | 77.0% |
| 4adnA01 | 1.20.1280.250 | Mainly Alpha › Up-down Bundle › Monooxygenase › | 0.50 | 41.0 | 4.03e-01 | 100.0% | 85.9% |
| 1x4pA00 | 1.10.10.790 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Surp module | 0.50 | 35.0 | 3.76e-01 | 78.5% | 87.9% |
ECOD (33)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3174373 | 101.1.2.780 ↗ | alpha arrays › HTH › HTH › winged helix domain › PF31199 | 0.76 | 52.0 | 5.37e-01 | 88.6% | 74.7% |
| 5063967 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.71 | 47.0 | 5.32e-01 | 87.3% | 90.0% |
| 3316066 | 192.4.1.42 ↗ | alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › WAV3_C | 0.71 | 38.0 | 3.44e-01 | 100.0% | 39.0% |
| 5049406 | 148.1.3.20 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › AAA_lid_2 | 0.69 | 50.0 | 4.67e-01 | 74.7% | 80.0% |
| 5076446 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.67 | 45.0 | 4.68e-01 | 84.8% | 73.3% |
| 3784553 | 592.1.1.6 ↗ | alpha arrays › PWI domain-like › PWI domain › PWI domain › Nab2 | 0.67 | 44.0 | 4.31e-01 | 83.5% | 62.4% |
| 3625454 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.64 | 55.0 | 5.01e-01 | 100.0% | 82.7% |
| 3497021 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.63 | 55.0 | 5.04e-01 | 100.0% | 81.9% |
| 3213609 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.63 | 52.0 | 5.24e-01 | 94.9% | 100.0% |
| 4125972 | 101.1.6.4 ↗ | alpha arrays › HTH › HTH › TrpR › Bac_DnaA_C | 0.62 | 47.0 | 4.34e-01 | 89.9% | 63.0% |
| 3425325 | 101.1.1.138 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD | 0.62 | 53.0 | 5.18e-01 | 94.9% | 94.1% |
| 5050871 | 102.1.1.27 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › HHH_5 | 0.62 | 41.0 | 4.51e-01 | 75.9% | 84.1% |
| 3467577 | 101.1.1.121 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › Myb_DNA-bind_3 | 0.61 | 52.0 | 4.58e-01 | 96.2% | 92.5% |
| 4942256 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.61 | 44.0 | 2.98e-01 | 77.2% | 20.3% |
| 4212920 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.60 | 51.0 | 4.43e-01 | 100.0% | 60.7% |
| 4548049 | 3651.1.1.1 ↗ | alpha bundles › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › Translation initiation factor eIF-2B delta subunit N-terminal helical domain › IF-2B | 0.60 | 53.0 | 4.52e-01 | 100.0% | 63.8% |
| 1031090 | 3705.1.1.1 ↗ | alpha arrays › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › Bacterial chaperone lipoprotein (PulS_OutS) › T2SS_PulS_OutS | 0.60 | 47.0 | 4.57e-01 | 87.3% | 85.7% |
| 3236758 | 2006.1.1.44 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase, Hydrolase_like | 0.59 | 46.0 | 3.35e-01 | 86.1% | 33.9% |
| 3232843 | 106.1.1.0 ↗ | alpha arrays › Globin-like › Globin-like › Globin-like | 0.59 | 45.0 | 3.62e-01 | 84.8% | 80.6% |
| 3369433 | 101.1.1.138 ↗ | alpha arrays › HTH › HTH › Three-helical HTH › GeBP-like_DBD | 0.58 | 51.0 | 4.92e-01 | 98.7% | 90.0% |
| 3589063 | 4336.1.1.1 ↗ | alpha duplicates or obligate multimers › YheA/YmcA-like › YheA/YmcA-like › YheA/YmcA-like › Com_YlbF | 0.58 | 31.0 | 2.71e-01 | 72.2% | 35.0% |
| 3211834 | 198.1.1.0 ↗ | alpha arrays › Saposin-like › Saposin-like › Saposin-like | 0.56 | 47.0 | 4.75e-01 | 96.2% | 100.0% |
| 3969479 | 628.1.1.0 ↗ | alpha bundles › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain › Fatty acid responsive transcription factor FadR, C-terminal domain | 0.56 | 48.0 | 4.08e-01 | 100.0% | 93.6% |
| 3466688 | 109.46.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › Helical domain in TOPLESS related protein 2 (TPR2) › Helical domain in TOPLESS related protein 2 (TPR2) | 0.55 | 40.0 | 3.57e-01 | 78.5% | 97.5% |
| 4981270 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.55 | 49.0 | 3.17e-01 | 100.0% | 39.2% |
| 2771599 | 592.3.1.1 ↗ | alpha arrays › PWI domain-like › N-terminal domain of egg case silk protein TuSp1 › N-terminal domain of egg case silk protein TuSp1 › Spidroin_N | 0.55 | 44.0 | 3.77e-01 | 93.7% | 53.3% |
| 169082 | 2006.1.1.1 ↗ | a/b three-layered sandwiches › HAD domain-like › HAD domain-related › HAD-like › Hydrolase | 0.54 | 45.0 | 3.29e-01 | 93.7% | 75.5% |
| 3705784 | 601.1.1.0 ↗ | alpha bundles › Four-helical up-and-down bundle › alpha-catenin-related › alpha-catenin/vinculin | 0.53 | 40.0 | 3.40e-01 | 82.3% | 52.1% |
| 3189734 | 109.4.1.70 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › CID | 0.53 | 37.0 | 3.11e-01 | 79.7% | 41.4% |
| 3786761 | 551.1.1.1 ↗ | alpha arrays › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › Hsp90 co-chaperone CDC37 middle domain › CDC37_M | 0.53 | 44.0 | 3.68e-01 | 93.7% | 61.4% |
| 3633107 | 5057.1.1.0 ↗ | alpha bundles › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore › Neurotransmitter-gated ion-channel transmembrane pore | 0.51 | 45.0 | 4.28e-01 | 98.7% | 94.7% |
| 3714093 | 109.4.1.0 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat | 0.51 | 35.0 | 3.31e-01 | 87.3% | 58.0% |
| 3742773 | 3748.1.1.4 ↗ | extended segments › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › 26S proteasome regulatory subunit RPN8/RPN11 C-terminal domain › RPN11_C | 0.51 | 39.0 | 3.78e-01 | 100.0% | 73.9% |