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MW460245.1__QRE00188.1__X__00145

Bact-Vir

MW460245.1__QRE00188.1__X__00145

Identity

Accession:
MW460245 ↗
Kingdom:
phage

Quality

73.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1173-1259
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF03895.22 best YadA_anchor 62.5 4.20e-17 67.8% 96.7%
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gr7A00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.97 93.0 8.75e-01 100.0% 86.1%
2lmeA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.91 84.0 7.86e-01 100.0% 81.9%
3kvnA02 2.40.128.130 Mainly Beta › Beta Barrel › Lipocalin › Autotransporter beta-domain 0.78 57.0 3.88e-01 77.0% 50.3%
3rd6A00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.71 49.0 4.09e-01 71.3% 46.5%
3pgbA01 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.71 48.0 2.91e-01 70.1% 17.7%
4e1sA00 2.40.160.160 Mainly Beta › Beta Barrel › Porin › Inverse autotransporter, beta-domain 0.70 55.0 3.93e-01 82.8% 33.5%
3otlA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.69 48.0 3.92e-01 71.3% 45.8%
1qj8A00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.69 54.0 4.51e-01 83.9% 58.1%
1e54A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.67 53.0 3.58e-01 85.1% 37.8%
1lkeA00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 45.0 3.67e-01 79.3% 40.8%
2d4rA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.63 43.0 3.57e-01 70.1% 50.7%
5o16B00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.63 45.0 3.16e-01 74.7% 43.4%
3ua3A03 2.70.160.11 Mainly Beta › Distorted Sandwich › Hnrnp arginine n-methyltransferase1 › Hnrnp arginine n-methyltransferase1 0.63 44.0 3.43e-01 74.7% 63.1%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.63 46.0 4.35e-01 80.5% 64.2%
1bxwA00 2.40.160.20 Mainly Beta › Beta Barrel › Porin › 0.63 49.0 3.91e-01 83.9% 57.6%
2retA00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.62 52.0 5.31e-01 93.1% 96.4%
5bw0F00 3.30.1300.30 Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › GSPII I/J protein-like 0.62 53.0 5.24e-01 96.6% 100.0%
3qf7A01 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.62 43.0 2.99e-01 72.4% 25.2%
3tzgA00 2.40.160.150 Mainly Beta › Beta Barrel › Porin › 0.61 48.0 3.50e-01 83.9% 49.0%
6secA03 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.60 53.0 3.74e-01 100.0% 83.5%
3obaA05 2.70.98.10 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.59 52.0 3.59e-01 96.6% 77.5%
6obtA00 3.10.129.110 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Polyketide synthase dehydratase 0.58 41.0 2.96e-01 73.6% 42.5%
3eliA00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.58 43.0 3.67e-01 79.3% 48.6%
1xkwA02 2.40.170.20 Mainly Beta › Beta Barrel › Maltoporin; Chain A › TonB-dependent receptor, beta-barrel domain 0.57 51.0 3.14e-01 100.0% 82.2%
2x8fA02 2.40.128.10 Mainly Beta › Beta Barrel › Lipocalin › 0.57 36.0 3.52e-01 77.0% 58.9%
7wa9A01 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.56 43.0 3.75e-01 83.9% 58.9%
5dl7A00 2.40.160.10 Mainly Beta › Beta Barrel › Porin › Porin 0.56 47.0 3.04e-01 92.0% 23.1%
4jguA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 47.0 4.63e-01 95.4% 95.8%
3bnvD00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.56 47.0 3.99e-01 92.0% 57.3%
1avgI00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.55 42.0 3.55e-01 80.5% 48.6%
7ufsA01 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.55 47.0 3.29e-01 92.0% 70.1%
3tfzB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.54 39.0 3.29e-01 79.3% 58.8%
2c4xA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 42.0 4.18e-01 90.8% 93.6%
4kkpA01 2.60.40.3880 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 39.0 3.55e-01 81.6% 97.5%
1pu4A03 2.70.98.20 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Copper amine oxidase, catalytic domain 0.52 43.0 2.84e-01 95.4% 81.6%
2ownA00 3.10.129.10 Alpha Beta › Roll › Thiol Ester Dehydrase; Chain A › Hotdog Thioesterase 0.50 45.0 3.25e-01 100.0% 77.3%
3fkaB00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.50 35.0 3.14e-01 71.3% 63.3%
6cxhA03 2.60.40.1580 Mainly Beta › Sandwich › Immunoglobulin-like › Particulate methane monooxygenase, b subunit. Chain: A, domain 3 0.50 38.0 3.37e-01 83.9% 96.3%
ECOD (51)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
1413889 274.1.1.5 a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.96 93.0 9.16e-01 100.0% 95.6%
4268461 274.1.1.5 a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.93 87.0 8.80e-01 100.0% 100.0%
4083786 274.1.1.5 a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.90 83.0 8.24e-01 100.0% 95.6%
4511741 274.1.1.5 a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.88 82.0 8.14e-01 100.0% 95.6%
4130767 274.1.1.5 a+b two layers › Pili subunits › Pili subunits › Pili subunits › YadA_anchor 0.86 79.0 8.01e-01 100.0% 100.0%
4955671 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.77 41.0 4.32e-01 87.4% 57.5%
3974176 5084.8.1.0 beta barrels › Outer membrane meander beta-barrels › Usher PapC translocation pore › Usher PapC translocation pore 0.76 58.0 3.54e-01 78.2% 15.8%
5037445 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.75 58.0 4.04e-01 80.5% 77.3%
3964265 5084.1.1.43 beta barrels › Outer membrane meander beta-barrels › OMPA-like › OMPA-like › Autotransporter 0.70 56.0 4.61e-01 82.8% 64.8%
4009799 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.70 63.0 5.97e-01 100.0% 84.8%
3438237 12.3.1.2 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Cu_amine_oxid 0.70 48.0 3.38e-01 70.1% 37.6%
4974362 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.69 53.0 3.77e-01 80.5% 80.6%
3366063 331.3.1.17 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VASt 0.69 53.0 4.07e-01 79.3% 45.6%
4955361 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.69 55.0 3.87e-01 83.9% 79.2%
5013876 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.67 53.0 3.78e-01 83.9% 81.1%
4655950 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.67 60.0 5.48e-01 100.0% 81.7%
4466411 4051.1.1.2 a+b two layers › a+b domain in Capz › a+b domain in Capz › a+b domain in Capz › F-actin_cap_A 0.66 46.0 3.60e-01 71.3% 44.6%
9395 2003.1.5.151 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_23, Methyltransf_25 0.66 50.0 3.57e-01 80.5% 78.7%
3508903 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.64 49.0 4.63e-01 81.6% 80.0%
3260630 222.1.1.12 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PS-DH 0.64 46.0 3.56e-01 74.7% 73.3%
3972681 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.63 53.0 5.17e-01 93.1% 96.8%
3797033 319.1.1.0 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones 0.63 46.0 3.78e-01 77.0% 65.8%
1122053 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.62 47.0 3.38e-01 80.5% 76.4%
3390634 243.1.1.41 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › Coa1 0.62 47.0 4.60e-01 79.3% 78.9%
3769924 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.62 48.0 4.22e-01 82.8% 65.4%
1866758 274.1.1.4 a+b two layers › Pili subunits › Pili subunits › Pili subunits › T2SSI 0.62 53.0 5.24e-01 96.6% 100.0%
3624756 243.1.1.12 a+b two layers › Cystatin-like › NTF2-like › NTF2-like › TIM21 0.62 48.0 4.52e-01 82.8% 78.8%
3088529 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.61 43.0 3.65e-01 79.3% 44.1%
5047426 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.61 43.0 3.92e-01 72.4% 61.7%
3952590 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.61 42.0 3.66e-01 71.3% 85.2%
2141857 12.3.1.6 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Bgal_small_N 0.60 54.0 3.73e-01 100.0% 80.3%
4466226 5087.1.1.1 beta meanders › Lipovitellin-phosvitin complex › Lipovitellin LV-2 › Lipovitellin LV-2 › Vit_b-sht_shell 0.60 42.0 4.02e-01 73.6% 69.5%
2029638 71.2.1.2 beta meanders › Lipoprotein localization factors LolAB › PA1994-like › PA1994-like › EipB_like 0.60 49.0 3.51e-01 87.4% 42.1%
4982423 2003.1.5.81 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.60 47.0 3.35e-01 83.9% 77.3%
5047424 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.59 45.0 4.03e-01 81.6% 100.0%
4999715 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.59 44.0 3.94e-01 80.5% 100.0%
4117472 331.3.1.11 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › Polyketide_cyc2 0.58 40.0 3.29e-01 74.7% 38.7%
4086554 11.10.1.1 beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › Sina_TRAF 0.57 42.0 3.69e-01 79.3% 78.5%
5044863 331.9.1.0 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain 0.56 43.0 3.82e-01 83.9% 96.2%
3290470 222.1.1.4 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT 0.55 48.0 3.93e-01 95.4% 56.2%
828 9.1.1.5 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Triabin 0.55 42.0 3.55e-01 80.5% 48.6%
3385720 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.55 46.0 3.89e-01 92.0% 56.6%
3254303 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.55 44.0 3.46e-01 88.5% 55.8%
3395788 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.54 41.0 3.74e-01 80.5% 67.8%
3972254 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.54 47.0 3.96e-01 97.7% 60.7%
3817452 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.54 47.0 4.23e-01 96.6% 75.0%
1692382 222.1.1.1 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › MaoC_dehydratas 0.54 47.0 3.93e-01 98.9% 58.1%
4047090 222.1.1.24 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › AfsA 0.54 47.0 4.01e-01 96.6% 97.9%
3188579 222.1.1.0 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase 0.54 47.0 3.49e-01 100.0% 52.9%
1935072 222.1.1.17 a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › PKS_DH_N 0.53 41.0 3.82e-01 86.2% 80.9%
4387407 5084.5.1.0 beta barrels › Outer membrane meander beta-barrels › Porins › Porin 0.52 44.0 2.52e-01 97.7% 92.6%
D2 medium residues 277-343
PDB
Domain cluster: representative
D3 medium residues 344-373_843-886
PDB
Domain cluster: representative
D4 medium residues 415-479
PDB
Domain cluster: representative
D5 medium residues 984-1037
PDB
Domain cluster: representative
ECOD (6)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4773088 3512.1.1.2 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › YadA_stalk 0.86 68.0 7.02e-01 92.6% 90.2%
1546306 3512.1.1.2 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › YadA_stalk 0.69 59.0 4.39e-01 100.0% 37.6%
1503829 3512.1.1.2 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › YadA_stalk 0.66 58.0 3.54e-01 100.0% 15.9%
4572696 3512.1.1.2 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › YadA_stalk 0.64 53.0 4.54e-01 92.6% 57.6%
3984087 3512.1.1.0 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain 0.62 53.0 3.91e-01 98.1% 61.9%
4150921 3512.1.1.2 beta duplicates or obligate multimers › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › Trimeric autotransporter adhesin GIN domain › YadA_stalk 0.54 42.0 2.52e-01 85.2% 12.3%
D6 medium residues 1038-1100
PDB