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MW460245.1__QRE00192.1__X__00149

Bact-Vir

MW460245.1__QRE00192.1__X__00149

Identity

Accession:
MW460245 ↗
Kingdom:
phage

Quality

87.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Burkholderia_phage_BCSR5

TaxID: 2805747

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 108-181
PDB
Domain cluster: representative
CATH (21)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1ab8A00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.69 62.0 4.63e-01 98.6% 80.2%
2pbeA02 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.63 56.0 4.67e-01 98.6% 98.4%
5jazA03 1.10.1740.10 Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif 0.62 39.0 3.70e-01 75.7% 51.6%
3umbA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.61 49.0 4.83e-01 100.0% 82.3%
1nkvB00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.60 50.0 3.57e-01 94.6% 93.5%
1wa8A00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.59 36.0 3.30e-01 77.0% 46.5%
3t54A01 3.40.50.11950 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.58 42.0 3.67e-01 77.0% 100.0%
3cdlB02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.58 41.0 3.49e-01 77.0% 91.7%
7wz5A01 1.20.1250.10 Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › 0.57 41.0 3.28e-01 75.7% 99.3%
4nb5B02 1.10.287.160 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › HR1 repeat 0.57 36.0 3.88e-01 74.3% 75.0%
4aflA00 6.10.140.1740 Special › Helix non-globular › Helix Hairpins › 0.56 40.0 3.55e-01 74.3% 62.7%
2yayA02 1.20.1670.10 Mainly Alpha › Up-down Bundle › all-alpha NTP pyrophosphatase › Type II deoxyuridine triphosphatase 0.55 48.0 3.97e-01 97.3% 98.5%
2yx8A00 1.10.150.510 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Receptor activity modifying family 0.55 49.0 4.78e-01 100.0% 97.5%
4v1gA00 1.20.20.10 Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C 0.55 39.0 3.79e-01 75.7% 67.1%
2v6yA00 1.20.58.80 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphotransferase system, lactose/cellobiose-type IIA subunit 0.54 46.0 4.67e-01 98.6% 94.7%
1q6aA00 1.10.1240.30 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › KaiA/RbsU domain 0.54 43.0 3.76e-01 85.1% 70.1%
3f4mA00 1.20.1440.160 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › Tumor necrosis factor alpha-induced protein 8-like 0.53 46.0 3.70e-01 100.0% 53.9%
7ae2A01 1.20.120.580 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › bsu32300-like 0.53 44.0 3.60e-01 91.9% 83.9%
5kp7B00 1.10.1200.10 Mainly Alpha › Orthogonal Bundle › Non-ribosomal Peptide Synthetase Peptidyl Carrier Protein; Chain A › ACP-like 0.50 39.0 3.89e-01 94.6% 81.0%
1t72A01 1.20.58.220 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2 0.50 45.0 3.87e-01 100.0% 79.5%
1iq0A03 1.10.730.10 Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1 0.50 45.0 3.83e-01 97.3% 79.3%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3707613 3877.1.1.0 ↗ alpha bundles › Membrane protein insertase YidC-related › Membrane protein insertase YidC-related › Membrane protein insertase YidC 0.58 42.0 2.97e-01 78.4% 54.0%
1068648 3720.1.1.1 ↗ alpha bundles › Receptor activity-modifying protein (RAMP) › Receptor activity-modifying protein (RAMP) › Receptor activity-modifying protein (RAMP) › RAMP 0.56 50.0 4.71e-01 100.0% 87.9%
2577335 7110.1.1.1 ↗ alpha arrays › Helical insertion of YcjX stress protein › Helical insertion of YcjX stress protein › Helical insertion of YcjX stress protein › DUF463 0.56 48.0 3.97e-01 95.9% 54.4%
3878391 3720.1.1.1 ↗ alpha bundles › Receptor activity-modifying protein (RAMP) › Receptor activity-modifying protein (RAMP) › Receptor activity-modifying protein (RAMP) › RAMP 0.55 49.0 4.51e-01 98.6% 85.3%
3685078 207.1.1.22 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › LRR_6 0.55 42.0 2.68e-01 83.8% 23.9%
4961745 7516.1.1.79 ↗ a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Glyco_trans_2_3 0.54 47.0 3.02e-01 98.6% 52.9%
3485696 192.29.1.139 ↗ alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › TRAM_LAG1_CLN8 0.53 47.0 3.92e-01 100.0% 75.4%
3564496 604.1.1.0 ↗ alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 47.0 3.72e-01 98.6% 93.3%
3421046 101.1.1.0 ↗ alpha arrays › HTH › HTH › Three-helical HTH 0.52 42.0 3.95e-01 87.8% 98.9%
3832267 192.5.1.0 ↗ alpha bundles › Long alpha-hairpin › HR1 repeat › HR1 repeat 0.52 43.0 3.91e-01 91.9% 95.0%
3469730 603.1.1.0 ↗ alpha bundles › STAT-like › t-snare proteins › t-snare proteins 0.51 40.0 3.55e-01 85.1% 92.4%
3462217 604.12.1.0 ↗ alpha bundles › Spectrin repeat-like › MIT domain › MIT domain 0.51 45.0 4.24e-01 100.0% 93.3%