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MW460245.1__QRE00244.1__X__00201

Bact-Vir

MW460245.1__QRE00244.1__X__00201

Identity

Accession:
MW460245 ↗
Kingdom:
phage

Quality

72.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Burkholderia_phage_BCSR5

TaxID: 2805747

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 16-98
PDB
Domain cluster: representative
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
4rs6A01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.69 38.0 3.35e-01 91.6% 37.3%
1xppD00 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.65 45.0 4.19e-01 74.7% 58.4%
1uv7A00 3.30.1360.100 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › General secretion pathway protein M, EpsM 0.62 49.0 5.13e-01 97.6% 97.4%
5k19A00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.61 49.0 3.18e-01 86.7% 28.5%
2wyhB06 2.70.98.30 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › Golgi alpha-mannosidase II; domain 4 0.60 50.0 3.59e-01 96.4% 89.8%
2r5vA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.59 41.0 3.42e-01 72.3% 90.0%
3h0gH00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.58 39.0 3.49e-01 71.1% 84.7%
3havA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.57 44.0 4.31e-01 83.1% 96.6%
5c3vA01 3.30.800.10 Alpha Beta › 2-Layer Sandwich › Phosphatidylinositol Phosphate Kinase II Beta › Phosphatidylinositol Phosphate Kinase II Beta 0.57 44.0 3.53e-01 84.3% 100.0%
3ovcA01 3.30.200.150 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › 0.57 42.0 4.57e-01 83.1% 93.0%
6kjhA01 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.56 46.0 3.10e-01 92.8% 74.8%
3f7wA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.56 41.0 4.04e-01 79.5% 100.0%
4gb7A00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.54 44.0 2.90e-01 91.6% 63.4%
3dueA00 3.40.1420.30 Alpha Beta › 3-Layer(aba) Sandwich › Inhibitor of vertebrate lysozyme, Ivy › 0.54 33.0 2.93e-01 79.5% 40.2%
4ivkA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.53 43.0 2.86e-01 92.8% 73.3%
4hdjA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.53 40.0 2.61e-01 79.5% 90.4%
1k85A00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 33.0 3.28e-01 77.1% 59.1%
2ogqA01 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.53 39.0 3.41e-01 78.3% 63.5%
2ymsB00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.53 36.0 3.82e-01 80.7% 79.7%
2ymsA00 2.40.128.630 Mainly Beta › Beta Barrel › Lipocalin › 0.53 36.0 3.16e-01 80.7% 47.6%
3k50A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.52 31.0 2.98e-01 80.7% 48.0%
4noiA01 3.30.1360.10 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › RNA polymerase, RBP11-like subunit 0.52 37.0 3.50e-01 75.9% 69.9%
3njcA00 3.30.1380.20 Alpha Beta › 2-Layer Sandwich › Muramoyl-pentapeptide Carboxypeptidase; domain 2 › Trafficking protein particle complex subunit 3 0.52 45.0 3.74e-01 100.0% 60.8%
2lmcB00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.52 27.0 3.03e-01 83.1% 63.9%
2ymsC00 2.40.10.480 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 34.0 3.59e-01 79.5% 76.0%
3ftbA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 45.0 4.11e-01 100.0% 81.2%
2yrrA01 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.51 45.0 4.15e-01 100.0% 76.6%
ECOD (21)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4947558 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.73 52.0 5.06e-01 73.5% 76.7%
4929392 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.72 50.0 4.93e-01 72.3% 81.1%
5028597 331.1.1.0 ↗ a+b two layers › TBP-like › TATA-box binding protein-like › TATA-box binding protein-like 0.71 49.0 5.02e-01 74.7% 75.0%
3238801 2484.1.1.200 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › FTH 0.63 53.0 3.32e-01 90.4% 20.7%
3536857 145.1.1.0 ↗ alpha arrays › F-box domain › F-box domain › F-box domain 0.62 54.0 4.28e-01 94.0% 76.4%
4239895 310.3.1.2 ↗ a+b two layers › RRF/tRNA synthetase additional domain-like › General secretion pathway protein M (EpsM) periplasmic domain-related › General secretion pathway protein M (EpsM) periplasmic domain-related › T2SSM 0.60 51.0 4.73e-01 98.8% 75.2%
3214867 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.59 51.0 3.44e-01 94.0% 33.9%
5051686 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.58 51.0 4.43e-01 100.0% 76.1%
3517889 331.23.1.0 ↗ a+b two layers › TBP-like › Integrator IntS9/IntS11 C-terminal domain › Integrator IntS9/IntS11 C-terminal domain 0.56 48.0 4.47e-01 94.0% 76.9%
3210916 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.55 47.0 3.51e-01 94.0% 51.2%
3213130 207.1.1.52 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FBA_2 0.55 46.0 3.39e-01 92.8% 39.5%
3569116 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.55 48.0 3.52e-01 97.6% 60.4%
3587781 223.2.1.0 ↗ a+b three layers › Profilin-like › profilin-like › profilin-like 0.54 37.0 3.23e-01 71.1% 58.5%
3565087 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.54 47.0 3.67e-01 98.8% 68.6%
3574066 6129.1.1.1 ↗ beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.53 46.0 3.54e-01 95.2% 66.5%
4943870 873.1.1.0 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain 0.52 46.0 4.15e-01 97.6% 83.5%
2627446 873.1.1.5 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › HNOB 0.52 45.0 3.54e-01 98.8% 47.4%
4941480 873.1.1.1 ↗ a+b complex topology › H-NOX domain › H-NOX domain › H-NOX domain › V4R 0.51 44.0 3.53e-01 100.0% 65.0%
3222575 207.1.1.81 ↗ beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.51 42.0 3.01e-01 91.6% 40.9%
3993399 11.1.1.2 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.51 33.0 3.15e-01 77.1% 56.8%
5051709 4019.1.1.1 ↗ alpha complex topology › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › alpha-helical domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.50 44.0 2.93e-01 96.4% 87.2%
D2 high residues 180-319
PDB
Domain cluster: rep: NC_020158__YP_007378970.1__HVTV1-65__00064__D54-164
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF10263.16 best SprT-like 40.0 4.50e-10 81.4% 88.8%
D3 high residues 342-447
PDB
Domain cluster: rep: SR-VP_2-4_scaffold_141_5652861_prodigal-single.1__X__X__00241__D308-411
CATH (14)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 48.0 4.97e-01 73.6% 80.0%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.64 45.0 5.09e-01 72.6% 100.0%
2gfuA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 46.0 4.30e-01 77.4% 85.8%
1vwxM01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.63 39.0 4.34e-01 73.6% 78.8%
1vx7N01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 39.0 4.31e-01 72.6% 78.8%
7b00A01 1.20.1740.10 Mainly Alpha › Up-down Bundle › Amino acid/polyamine transporter I › Amino acid/polyamine transporter I 0.58 42.0 2.72e-01 93.4% 17.4%
4bwiB01 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.57 42.0 3.44e-01 76.4% 80.7%
2ph7A01 1.10.3400.10 Mainly Alpha › Orthogonal Bundle › af_2093 domain like fold › af_2093 domain like 0.56 42.0 4.03e-01 80.2% 88.7%
3bb7A01 3.90.70.50 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › Streptopain (SpeB) 0.55 35.0 3.04e-01 84.0% 39.1%
3hcyA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.55 44.0 3.98e-01 87.7% 62.8%
4chmB00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.53 31.0 3.00e-01 75.5% 48.4%
3ci6B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.52 36.0 3.11e-01 70.8% 77.6%
6a97C01 3.30.500.10 Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like 0.51 36.0 3.38e-01 72.6% 100.0%
3o5yB00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.50 40.0 3.61e-01 86.8% 61.9%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3230520 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.73 50.0 5.42e-01 70.8% 88.9%
3622055 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 48.0 5.34e-01 70.8% 89.4%
3237262 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.70 48.0 4.81e-01 70.8% 70.9%
3936430 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.70 48.0 5.47e-01 70.8% 96.2%
3407820 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.69 47.0 5.21e-01 70.8% 87.1%
3662072 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.69 49.0 4.73e-01 73.6% 75.0%
3774108 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 47.0 4.96e-01 70.8% 80.0%
3503815 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.68 47.0 5.17e-01 70.8% 89.4%
3514906 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 48.0 3.93e-01 74.5% 62.6%
3408592 4.1.1.9 ↗ beta barrels › SH3 › SH3 › SH3 › TUDOR 0.67 46.0 4.79e-01 71.7% 78.0%
3936469 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 45.0 4.86e-01 70.8% 85.6%
4999430 4.11.1.0 ↗ beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase 0.65 50.0 4.81e-01 84.9% 71.7%
3389161 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.65 48.0 5.09e-01 78.3% 92.6%
3778257 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.64 40.0 3.65e-01 73.6% 47.9%
3815479 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.63 43.0 5.01e-01 71.7% 100.0%
4261791 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.63 40.0 3.61e-01 73.6% 46.9%
3663761 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 46.0 4.70e-01 78.3% 79.0%
3592541 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 42.0 4.78e-01 70.8% 97.5%
4023868 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.61 40.0 3.52e-01 73.6% 44.5%
2106277 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.60 41.0 3.87e-01 70.8% 58.9%
3832128 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 46.0 4.83e-01 80.2% 92.6%
3624441 4.1.1.24 ↗ beta barrels › SH3 › SH3 › SH3 › Ribosomal_L14e 0.59 40.0 3.61e-01 70.8% 52.1%