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MW460245.1__QRE00259.1__X__00216

Bact-Vir

MW460245.1__QRE00259.1__X__00216

Identity

Accession:
MW460245 ↗
Kingdom:
phage

Quality

83.6 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 85-141
PDB
Domain cluster: representative
CATH (16)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ossC00 2.30.30.830 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.03e-01 70.2% 81.5%
4hasA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.60 46.0 3.83e-01 86.0% 100.0%
4mi7A00 3.90.70.170 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.59 40.0 3.18e-01 70.2% 37.1%
3fogA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.58 43.0 3.65e-01 82.5% 95.1%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.58 49.0 3.53e-01 100.0% 67.2%
7d8gA01 2.40.380.10 Mainly Beta › Beta Barrel › FomD barrel-like fold › FomD-like 0.57 39.0 2.89e-01 71.9% 62.9%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 43.0 3.98e-01 84.2% 77.0%
4itjB01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 41.0 3.58e-01 80.7% 88.6%
2ra9A02 2.30.270.10 Mainly Beta › Roll › duf1285 protein fold › duf1285 protein 0.55 41.0 3.85e-01 86.0% 65.8%
2wfwB02 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.55 40.0 3.85e-01 78.9% 76.1%
3d0fA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.53 40.0 3.75e-01 82.5% 87.7%
4q66D01 6.20.120.50 Special › Other non-globular › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.53 40.0 3.75e-01 98.2% 65.8%
3kyaA02 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.52 37.0 2.31e-01 77.2% 23.4%
1onfA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.51 31.0 2.60e-01 70.2% 28.0%
2auwA01 3.30.2020.10 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › NE0471-like N-terminal domain 0.50 39.0 3.51e-01 86.0% 93.9%
1inlC02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.50 36.0 3.55e-01 78.9% 78.1%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5081654 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.85 69.0 6.80e-01 94.7% 83.3%
4263412 620.1.1.2 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.71 49.0 3.50e-01 71.9% 54.2%
4512385 620.1.1.2 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.65 44.0 3.11e-01 70.2% 50.0%
4325664 330.7.1.0 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain 0.59 44.0 4.42e-01 89.5% 80.0%
5004414 1.1.2.0 beta barrels › cradle loop barrel › RIFT-related › double psi 0.59 45.0 3.65e-01 86.0% 100.0%
3225196 2485.1.1.0 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.58 40.0 3.38e-01 75.4% 84.3%
3950423 243.3.1.24 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › LGFP 0.57 46.0 3.73e-01 98.2% 66.2%
3987614 2.1.1.57 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RecO_N 0.57 44.0 3.91e-01 80.7% 71.2%
4092565 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.57 38.0 2.78e-01 70.2% 61.2%
4959167 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.56 42.0 4.15e-01 86.0% 93.8%
5049906 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.56 38.0 3.77e-01 75.4% 66.7%
168736 2.1.1.3 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › CSD 0.56 42.0 4.10e-01 84.2% 84.8%
4940177 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.56 44.0 4.26e-01 96.5% 84.3%
3716768 5.1.3.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.55 39.0 2.51e-01 80.7% 26.5%
3388362 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.55 38.0 2.18e-01 73.7% 73.4%
3510517 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 41.0 3.41e-01 84.2% 70.0%
3953524 378.1.1.23 few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › DUF222 0.54 42.0 3.15e-01 87.7% 54.8%
3520270 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.54 42.0 3.51e-01 86.0% 46.7%
5013223 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.54 43.0 2.94e-01 87.7% 29.8%
4661064 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.54 37.0 3.68e-01 91.2% 69.5%
3684504 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.54 40.0 3.40e-01 84.2% 82.9%
4959884 4100.1.1.0 a+b duplicates or obligate multimers › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like › TTHA1013/TTHA0281-like 0.54 39.0 3.99e-01 94.7% 85.5%
5075725 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.54 37.0 2.87e-01 75.4% 58.6%
3804264 64.1.1.8 beta meanders › WW domain-like › WW domain › WW domain › DUF7028 0.53 36.0 3.23e-01 89.5% 47.1%
4683204 101.35.1.5 alpha arrays › HTH › DNA repair regulatory protein RecX › DNA repair regulatory protein RecX › RecX_HTH1 0.53 40.0 3.39e-01 86.0% 45.7%
4944767 101.1.2.883 alpha arrays › HTH › HTH › winged helix domain › Radical_SAM 0.53 41.0 3.80e-01 87.7% 98.7%
4945344 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.53 39.0 2.51e-01 84.2% 36.3%
3687406 386.1.1.0 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers 0.53 36.0 3.27e-01 73.7% 69.0%
3501861 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.53 43.0 3.63e-01 96.5% 61.9%
5021082 267.1.1.3 a+b complex topology › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Metal cation-transporting ATPase, ATP-binding domain › Cation_ATPase 0.53 38.0 2.69e-01 82.5% 49.1%
4593997 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 43.0 4.20e-01 94.7% 96.9%
1146605 71.1.1.3 beta meanders › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › Lipoprotein localization factors LolAB › LolB 0.52 35.0 2.59e-01 70.2% 35.4%
5060852 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.52 37.0 4.02e-01 82.5% 100.0%
5056316 2002.1.1.120 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Radical_SAM 0.51 43.0 2.71e-01 98.2% 92.4%
5038003 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.51 38.0 3.94e-01 94.7% 100.0%
3289062 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.51 41.0 3.64e-01 94.7% 61.1%
3883088 252.1.1.1 a+b two layers › DNA-binding domain › Methyl-CpG-binding domain, MBD › Methyl-CpG-binding domain, MBD › MBD 0.51 37.0 3.53e-01 91.2% 64.3%
4980248 7089.1.1.0 a+b two layers › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD › Methane monooxygenase hydroxylase, MmoD 0.51 38.0 3.87e-01 89.5% 86.2%
3588447 2003.1.1.51 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › NAD(P)-binding Rossmann-fold domains › DFP 0.51 39.0 2.65e-01 89.5% 30.4%
3218903 207.1.1.81 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats › FTH 0.50 34.0 2.36e-01 70.2% 23.8%
4929550 4.6.1.2 beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PRC 0.50 38.0 3.61e-01 84.2% 72.9%
D2 medium residues 9-53
PDB
CATH (22)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r4kA01 2.170.260.10 Mainly Beta › Beta Complex › paz domain › paz domain 0.66 45.0 3.26e-01 71.1% 27.3%
2eqjA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 44.0 3.91e-01 77.8% 50.0%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.61 42.0 3.69e-01 71.1% 47.8%
2byvE05 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 46.0 3.89e-01 86.7% 48.1%
1aorA02 1.10.569.10 Mainly Alpha › Orthogonal Bundle › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A; domain 2 › Aldehyde Ferredoxin Oxidoreductase Protein, subunit A, domain 2 0.60 49.0 3.38e-01 100.0% 55.9%
5kcoA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.59 40.0 3.74e-01 71.1% 55.9%
2e9xB01 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.59 42.0 3.78e-01 77.8% 77.3%
2hekA01 1.10.3210.10 Mainly Alpha › Orthogonal Bundle › Hypothetical protein af1432 › Hypothetical protein af1432 0.57 39.0 2.48e-01 75.6% 58.4%
2k5nA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 46.0 4.07e-01 100.0% 74.3%
2diqA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 44.0 3.44e-01 86.7% 48.0%
7cfdA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.56 43.0 3.71e-01 86.7% 64.4%
2y3aA01 3.10.20.770 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.55 42.0 2.66e-01 88.9% 13.9%
2aj7A00 2.30.290.10 Mainly Beta › Roll › BH3618-like › BH3618-like 0.55 42.0 2.89e-01 82.2% 31.8%
2e6nA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.55 43.0 3.36e-01 88.9% 66.3%
2eyqA05 2.40.10.170 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.54 37.0 3.42e-01 73.3% 69.5%
3c6kA02 2.30.140.10 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Spermidine synthase, tetramerisation domain 0.53 39.0 3.70e-01 97.8% 64.3%
3anwA02 3.40.5.50 Alpha Beta › 3-Layer(aba) Sandwich › Ribosomal Protein L9; domain 1 › 0.52 38.0 3.55e-01 77.8% 93.1%
1kqfA02 3.40.50.740 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.52 40.0 2.56e-01 86.7% 70.7%
3d40A00 3.40.1160.10 Alpha Beta › 3-Layer(aba) Sandwich › Carbamate kinase › Acetylglutamate kinase-like 0.52 36.0 2.37e-01 80.0% 33.3%
3d6wB02 2.20.25.10 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.51 35.0 3.57e-01 80.0% 89.7%
5ncsA02 2.30.39.10 Mainly Beta › Roll › Alpha-1-antitrypsin; domain 1 › Alpha-1-antitrypsin, domain 1 0.51 37.0 2.72e-01 80.0% 84.2%
1a15A00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 36.0 3.27e-01 80.0% 53.7%
ECOD (31)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4263412 620.1.1.2 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.72 56.0 3.86e-01 86.7% 50.3%
3942661 620.1.1.2 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.69 53.0 3.71e-01 86.7% 51.0%
3717798 109.4.1.628 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Sec7-like_HUS 0.69 49.0 2.78e-01 77.8% 22.8%
3967370 620.1.1.2 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.69 53.0 3.67e-01 86.7% 49.4%
3260618 230.3.1.1 a+b two layers › T-fold › Elongation factor Ts (EF-Ts), dimerisation domain › Elongation factor Ts (EF-Ts), dimerisation domain › EF_TS 0.67 51.0 3.83e-01 86.7% 57.5%
3497972 1021.1.1.0 a+b two layers › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases › C-terminal domain in RNA helicases 0.66 50.0 4.14e-01 86.7% 45.9%
4512385 620.1.1.2 alpha bundles › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › YfiT-like putative metal-dependent hydrolases › DinB 0.65 48.0 3.35e-01 84.4% 47.6%
3722860 2004.1.1.463 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Kinesin, Kinesin_assoc, Microtub_bd 0.65 50.0 2.88e-01 86.7% 11.5%
3601490 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.65 48.0 3.45e-01 84.4% 42.1%
3696633 3393.1.1.2 extended segments › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › CAA3-type cytochrome c oxidase subunit IV › Kinesin_assoc 0.64 49.0 3.94e-01 86.7% 56.8%
3701382 312.1.1.8 a+b three layers › HIT-like › HIT-related › HIT-related › DcpS_C 0.62 47.0 2.98e-01 86.7% 94.2%
5000494 2004.1.1.29 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD 0.61 45.0 2.89e-01 82.2% 27.4%
3707996 131.1.1.3 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like › HD 0.58 43.0 2.48e-01 82.2% 37.5%
5049906 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.57 43.0 3.99e-01 91.1% 63.3%
4023115 2003.1.2.7 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_2 0.55 43.0 2.59e-01 88.9% 50.8%
3284480 323.1.1.0 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases 0.55 41.0 2.80e-01 82.2% 71.8%
4097002 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.54 45.0 4.23e-01 100.0% 91.5%
5075524 2484.1.1.302 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Cas12f1-like_TNB 0.54 43.0 2.93e-01 100.0% 22.6%
3684504 376.1.1.21 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-RING_2 0.54 43.0 3.48e-01 100.0% 81.0%
5065594 131.1.1.0 alpha complex topology › PDEase-like › HD-domain/PDEase-like › HD-domain/PDEase-like 0.54 38.0 2.32e-01 86.7% 15.7%
3790375 192.2.1.0 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin 0.54 41.0 3.13e-01 86.7% 38.4%
4954297 2003.2.1.0 a/b three-layered sandwiches › Rossmann-like › Formate dehydrogenase/DMSO reductase, domains 2 and 3 › Formate dehydrogenase/DMSO reductase, domains 2 and 3 0.53 43.0 2.81e-01 88.9% 71.1%
3515855 391.1.1.0 few secondary structure elements › Fibronectin type I module-like › Fibronectin type I module-like › Fibronectin type I module 0.53 37.0 3.06e-01 80.0% 38.0%
3950423 243.3.1.24 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › LGFP 0.52 41.0 3.15e-01 100.0% 47.7%
4362720 2.1.1.48 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Elong-fact-P_C 0.52 43.0 4.06e-01 100.0% 91.4%
1933326 323.1.1.3 a+b complex topology › CoA-dependent acyltransferases › CoA-dependent acyltransferases › CoA-dependent acyltransferases › AMP-binding 0.52 38.0 2.71e-01 86.7% 92.0%
3783976 192.2.1.2 alpha bundles › Long alpha-hairpin › Prefoldin › Prefoldin › Prefoldin 0.51 37.0 3.16e-01 84.4% 46.7%
4050627 513.1.1.1 a+b two layers › Obg GTP-binding protein C-terminal domain-like › Obg GTP-binding protein C-terminal domain › Obg GTP-binding protein C-terminal domain › DUF1967 0.51 38.0 3.34e-01 88.9% 92.5%
3970192 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.51 41.0 2.84e-01 97.8% 37.4%
3897269 379.1.1.3 few secondary structure elements › Kazal-type serine protease inhibitors-like › Kazal-type serine protease inhibitors › Kazal-type serine protease inhibitors › Kazal_2 0.51 34.0 2.89e-01 71.1% 44.7%
3979199 3988.1.1.0 a/b three-layered sandwiches › Type III R-M system modification subunit C-terminal domain › Type III R-M system modification subunit C-terminal domain › Type III R-M system modification subunit C-terminal domain 0.50 35.0 2.90e-01 75.6% 49.5%