Back to structures

MW460245.1__QRE00304.1__X__00261

Bact-Vir

MW460245.1__QRE00304.1__X__00261

Identity

Accession:
MW460245 ↗
Kingdom:
phage

Quality

68.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 23-99
PDB
Domain cluster: representative
CATH (37)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2zsgA02 3.90.230.10 Alpha Beta › Alpha-Beta Complex › Creatine Amidinohydrolase › Creatinase/methionine aminopeptidase superfamily 0.68 59.0 4.30e-01 100.0% 37.7%
1pwkA00 3.30.740.10 Alpha Beta › 2-Layer Sandwich › Protein Inhibitor Of Neuronal Nitric Oxide Synthase › Protein Inhibitor Of Neuronal Nitric Oxide Synthase; 0.67 61.0 5.75e-01 100.0% 84.6%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.64 51.0 5.13e-01 97.4% 87.0%
4k08A00 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.64 57.0 4.65e-01 100.0% 91.7%
1i42A00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.64 50.0 4.80e-01 97.4% 75.3%
3au4A02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.62 53.0 5.02e-01 96.1% 89.4%
2incC00 3.10.20.270 Alpha Beta › Roll › Ubiquitin-like (UB roll) › TmoB-like 0.61 49.0 4.87e-01 98.7% 84.3%
2c7hA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.61 50.0 4.85e-01 94.8% 82.6%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.60 52.0 4.41e-01 100.0% 60.2%
3dplC03 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.60 47.0 4.62e-01 88.3% 79.5%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 51.0 4.77e-01 100.0% 89.6%
3nuhB03 3.10.20.690 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.58 48.0 4.63e-01 100.0% 78.7%
3bgaA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.58 51.0 4.57e-01 100.0% 83.8%
5ejrA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 47.0 4.61e-01 93.5% 91.9%
3tcaA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 49.0 4.75e-01 98.7% 86.7%
6qlyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.57 49.0 4.85e-01 100.0% 91.6%
2k7bA00 1.10.238.10 Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand 0.56 47.0 4.78e-01 100.0% 94.7%
5xbfA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 48.0 4.67e-01 97.4% 90.8%
2a8eA00 3.30.930.20 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Protein of unknown function DUF1054 0.56 42.0 3.12e-01 81.8% 36.2%
4b6wA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.56 46.0 4.55e-01 100.0% 86.0%
3jyzA00 3.30.700.10 Alpha Beta › 2-Layer Sandwich › Glycoprotein, Type 4 Pilin › Glycoprotein, Type 4 Pilin 0.55 46.0 3.88e-01 100.0% 88.0%
1sfuA00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 43.0 4.47e-01 83.1% 92.9%
5ikuA01 2.60.120.380 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 4.25e-01 94.8% 84.6%
2xy1A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 48.0 4.49e-01 100.0% 86.6%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.55 48.0 4.00e-01 100.0% 78.7%
4s3nA01 3.30.460.10 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2 0.54 48.0 3.90e-01 100.0% 71.4%
6sjqA00 3.10.20.650 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.54 46.0 4.13e-01 100.0% 75.7%
2kmaA02 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 46.0 4.52e-01 98.7% 90.4%
4hubG01 3.30.70.1730 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Ribosomal protein L10, N-terminal RNA-binding domain 0.53 42.0 3.25e-01 87.0% 64.9%
2hevF00 2.60.120.40 Mainly Beta › Sandwich › Jelly Rolls › 0.52 46.0 3.94e-01 100.0% 69.8%
2wanA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 41.0 3.78e-01 88.3% 70.6%
2c9aA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.51 45.0 3.57e-01 100.0% 73.5%
1atnD00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.51 43.0 3.08e-01 98.7% 36.8%
2aj6A00 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.51 36.0 3.10e-01 74.0% 60.0%
2v79A00 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.51 43.0 3.74e-01 92.2% 62.6%
2pkeA02 1.10.150.240 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 0.51 37.0 3.70e-01 77.9% 78.2%
6ea2A04 2.60.40.1840 Mainly Beta › Sandwich › Immunoglobulin-like › Aminopeptidase N, middle-beta domain 0.50 43.0 4.06e-01 97.4% 88.5%
ECOD (67)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4987267 283.1.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.75 67.0 4.76e-01 100.0% 33.9%
4945169 283.1.1.1 a+b duplicates or obligate multimers › Creatinase/aminopeptidase-like › Creatinase/aminopeptidase › Creatinase/aminopeptidase › Peptidase_M24 0.73 65.0 4.63e-01 100.0% 67.6%
1855692 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.71 66.0 6.05e-01 100.0% 83.5%
3620174 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.71 65.0 6.16e-01 100.0% 84.4%
3496118 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.71 64.0 6.07e-01 97.4% 84.4%
3485946 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.71 65.0 5.82e-01 100.0% 77.1%
3497368 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.69 63.0 6.12e-01 100.0% 89.4%
3470183 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.69 63.0 5.94e-01 100.0% 84.4%
3923243 864.1.1.3 a+b two layers › DLC › DLC › DLC › Ground-like 0.69 63.0 5.98e-01 100.0% 87.8%
3597342 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.68 62.0 6.02e-01 100.0% 89.4%
3471972 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.68 62.0 5.97e-01 97.4% 88.2%
3487926 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.68 61.0 5.96e-01 100.0% 89.4%
3217701 864.1.1.3 a+b two layers › DLC › DLC › DLC › Ground-like 0.68 61.0 5.95e-01 98.7% 95.2%
3239383 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.67 60.0 5.94e-01 97.4% 97.5%
2779088 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.67 61.0 5.49e-01 100.0% 76.4%
3601417 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.67 41.0 4.54e-01 70.1% 80.0%
3217700 864.1.1.3 a+b two layers › DLC › DLC › DLC › Ground-like 0.65 58.0 5.17e-01 100.0% 72.7%
3486711 221.1.1.33 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DWNN 0.65 51.0 5.02e-01 94.8% 78.8%
3595156 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.65 57.0 5.47e-01 98.7% 86.7%
3479914 864.1.1.0 a+b two layers › DLC › DLC › DLC 0.64 58.0 5.68e-01 100.0% 91.8%
2779096 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.64 58.0 5.54e-01 100.0% 90.0%
148947 864.1.1.1 a+b two layers › DLC › DLC › DLC › Dynein_light 0.64 58.0 5.58e-01 100.0% 89.5%
3981000 223.1.1.32 a+b three layers › Profilin-like › sensor domains › sensor domains › CpxA_peri 0.63 56.0 4.86e-01 100.0% 89.2%
3244128 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.63 50.0 4.70e-01 87.0% 95.8%
3617345 101.1.2.151 alpha arrays › HTH › HTH › winged helix domain › COR 0.63 50.0 4.62e-01 88.3% 91.0%
4484942 223.8.1.1 a+b three layers › Profilin-like › LapD periplasmic domain › LapD periplasmic domain › LapD_MoxY_N 0.62 55.0 4.70e-01 100.0% 84.0%
3695272 221.1.1.93 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.62 52.0 4.43e-01 96.1% 79.3%
3940471 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.62 49.0 4.84e-01 88.3% 98.8%
1285214 221.1.1.63 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › FERM_F1 0.62 53.0 4.82e-01 96.1% 74.0%
3494401 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.62 45.0 4.25e-01 96.1% 64.2%
3172225 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 50.0 4.65e-01 100.0% 71.0%
3414328 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 47.0 4.83e-01 98.7% 88.0%
4026242 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.61 50.0 5.10e-01 92.2% 92.0%
3193904 221.1.1.93 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF2420 0.61 51.0 4.42e-01 97.4% 83.1%
3993281 221.1.1.55 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RAWUL 0.61 53.0 4.59e-01 98.7% 87.5%
3228509 101.1.4.12 alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › MSC 0.61 49.0 4.04e-01 87.0% 61.5%
3555783 101.1.2.374 alpha arrays › HTH › HTH › winged helix domain › MCM4_WHD 0.61 47.0 4.45e-01 84.4% 75.3%
3800990 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.60 54.0 4.44e-01 100.0% 80.7%
3497076 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 53.0 5.08e-01 100.0% 85.6%
5079246 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 53.0 4.95e-01 98.7% 86.3%
4026446 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 48.0 4.54e-01 94.8% 71.6%
3268886 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.60 47.0 4.79e-01 97.4% 90.7%
4001035 221.1.1.33 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DWNN 0.60 50.0 4.74e-01 94.8% 90.5%
3585705 11.1.1.45 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Sec63 0.59 53.0 4.14e-01 100.0% 67.9%
4477966 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.59 53.0 4.33e-01 100.0% 91.4%
3483396 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 51.0 4.71e-01 100.0% 76.0%
3730748 390.1.1.0 few secondary structure elements › Hairpin loop containing domain-like › Hairpin loop containing domain-like › Hairpin loop containing domain-like 0.59 39.0 3.76e-01 100.0% 58.9%
4383342 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.59 50.0 4.67e-01 98.7% 93.0%
3475306 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.58 49.0 4.43e-01 96.1% 69.1%
3987997 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.58 44.0 4.51e-01 83.1% 100.0%
3849943 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.57 49.0 4.08e-01 98.7% 53.8%
3714622 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.57 39.0 3.39e-01 71.4% 72.5%
3740142 210.2.1.0 a+b four layers › Ntn/PP2C › Protein serine/threonine phosphatase 2C, catalytic domain › Protein serine/threonine phosphatase 2C, catalytic domain 0.56 45.0 3.20e-01 93.5% 47.3%
4250601 186.1.1.0 alpha arrays › lambda integrase-N-like › lambda integrase-N › lambda integrase-N 0.56 45.0 3.49e-01 87.0% 48.2%
4208835 221.1.1.113 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_3 0.56 47.0 4.24e-01 98.7% 81.7%
5034974 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.56 38.0 3.94e-01 70.1% 82.9%
3484048 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.55 43.0 4.48e-01 87.0% 100.0%
4929090 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 48.0 4.04e-01 100.0% 68.9%
3935404 221.1.1.76 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › RA_2 0.55 48.0 4.61e-01 100.0% 91.1%
3268294 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 47.0 4.29e-01 100.0% 86.4%
4197700 862.1.1.1 a+b complex topology › Prim-pol domain › Prim-pol domain › Prim-pol domain › DNA_primase_S 0.54 39.0 2.78e-01 80.5% 64.0%
3879537 221.1.1.94 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AIP3 0.53 43.0 4.30e-01 100.0% 90.0%
5055086 10.1.2.0 beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 45.0 4.21e-01 98.7% 82.1%
3900730 221.1.1.176 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PF26749 0.51 43.0 4.11e-01 100.0% 82.1%
3789407 2003.6.1.5 a/b three-layered sandwiches › Rossmann-like › Ribokinase-like › Ribokinase-like › Phos_pyr_kin 0.50 44.0 2.99e-01 100.0% 49.3%
3242010 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.95e-01 97.4% 82.0%
3299838 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 3.18e-01 100.0% 90.9%