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MW460246.1__QRE00403.1__X__00045

Bact-Vir

MW460246.1__QRE00403.1__X__00045

Identity

Accession:
MW460246 ↗
Kingdom:
phage

Quality

72.5 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-68
PDB
Domain cluster: representative
CATH (55)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3oymA02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.81 55.0 5.21e-01 70.0% 71.4%
4dq2A03 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.77 52.0 5.71e-01 70.0% 89.4%
3npfB01 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.76 51.0 5.00e-01 70.0% 89.4%
2ldmA01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.75 50.0 5.31e-01 70.0% 83.0%
2zkmX01 2.30.29.240 Mainly Beta › Roll › PH-domain like › 0.73 49.0 3.38e-01 70.0% 46.6%
2dl5A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 49.0 4.51e-01 70.0% 70.5%
4krtB03 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.73 49.0 4.77e-01 70.0% 97.0%
1jegA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 49.0 4.91e-01 70.0% 91.7%
1zuyA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.72 48.0 4.90e-01 70.0% 96.6%
1yn8A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 49.0 4.96e-01 71.7% 94.9%
2dk3A00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.71 49.0 4.36e-01 73.3% 67.4%
2yf0A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.69 47.0 4.12e-01 70.0% 77.0%
4dapA01 2.40.50.580 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.66 45.0 4.12e-01 71.7% 96.2%
1sr4A00 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.63 44.0 3.23e-01 73.3% 83.2%
2elbA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.63 42.0 3.57e-01 70.0% 65.7%
4oonA03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 46.0 3.82e-01 78.3% 96.2%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.62 42.0 4.33e-01 71.7% 87.3%
3pnnA00 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.61 48.0 3.11e-01 88.3% 32.9%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.61 41.0 4.23e-01 71.7% 82.8%
3o0hB02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.60 41.0 3.35e-01 71.7% 94.0%
3d1cA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 40.0 3.34e-01 71.7% 96.5%
2lydA00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 41.0 3.29e-01 75.0% 47.8%
4gp3A03 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 40.0 3.28e-01 71.7% 96.7%
4pdyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.59 41.0 3.48e-01 73.3% 62.6%
1q67A01 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.10e-01 70.0% 58.6%
1y13A00 3.30.479.10 Alpha Beta › 2-Layer Sandwich › Tetrahydropterin Synthase; Chain A › 6-pyruvoyl tetrahydropterin synthase/QueD 0.59 48.0 3.60e-01 93.3% 83.4%
4fk1A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.59 49.0 3.45e-01 91.7% 94.7%
4gp0B02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.59 40.0 3.29e-01 73.3% 95.9%
5xpyA02 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.59 40.0 3.42e-01 73.3% 63.0%
4bjzA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.58 45.0 3.33e-01 86.7% 70.8%
1zq1A01 2.30.30.520 Mainly Beta › Roll › SH3 type barrels. › 0.58 40.0 3.74e-01 73.3% 72.7%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.58 42.0 3.24e-01 78.3% 76.6%
3ol0B00 6.20.90.30 Special › Other non-globular › SH3 type barrels. › 0.58 28.0 3.24e-01 75.0% 61.0%
2vouB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 46.0 3.14e-01 91.7% 74.2%
4v0bA00 3.30.720.210 Alpha Beta › 2-Layer Sandwich › Signal recognition particle alu RNA binding heterodimer, srp9/1 › 0.57 39.0 3.85e-01 70.0% 76.2%
3c96A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.57 44.0 3.27e-01 86.7% 75.6%
3awiA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 45.0 3.09e-01 95.0% 81.1%
2vvlG01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 43.0 2.90e-01 85.0% 81.6%
3f8dB01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 3.19e-01 88.3% 89.7%
4c5wA01 3.30.2020.30 Alpha Beta › 2-Layer Sandwich › NE0471 N-terminal domain-like › 0.56 42.0 3.60e-01 81.7% 89.7%
2cduA02 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 41.0 3.13e-01 80.0% 82.1%
4b1bA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 48.0 2.91e-01 100.0% 56.5%
3rp7A01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.56 44.0 3.33e-01 91.7% 72.0%
2q0lA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 48.0 3.44e-01 100.0% 95.2%
1d8cA02 2.170.170.11 Mainly Beta › Beta Complex › Malate synthase G - maily-beta sub-domain › Malate synthase G - maily-beta sub-domain 0.55 39.0 3.19e-01 78.3% 71.1%
4a9wA00 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 44.0 2.84e-01 91.7% 94.2%
4k22B01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.55 45.0 3.08e-01 96.7% 76.3%
3i6dA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 46.0 3.45e-01 98.3% 93.0%
3ng7X01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.54 43.0 3.01e-01 91.7% 92.8%
2a9sB00 3.90.950.20 Alpha Beta › Alpha-Beta Complex › Maf protein › CinA-like 0.53 45.0 3.34e-01 96.7% 81.2%
5twbA01 3.50.50.60 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › FAD/NAD(P)-binding domain 0.52 44.0 3.08e-01 98.3% 93.7%
4w8kA01 3.100.10.20 Alpha Beta › Ribosomal Protein L15; Chain: K; domain 2 › Ribosomal Protein L15; Chain: K; domain 2 › CRISPR-associated endonuclease Cas1, N-terminal domain 0.52 37.0 3.25e-01 76.7% 72.5%
2jv8A00 3.30.1880.10 Alpha Beta › 2-Layer Sandwich › protein ne1242 fold › protein ne1242 domain like 0.51 35.0 3.41e-01 90.0% 61.6%
3bdlA01 2.40.50.90 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 37.0 2.76e-01 78.3% 94.6%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.50 39.0 2.68e-01 90.0% 23.5%
ECOD (65)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3621818 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.85 57.0 6.27e-01 70.0% 86.0%
3993250 4.1.1.333 beta barrels › SH3 › SH3 › SH3 › PF29330 0.85 59.0 6.13e-01 71.7% 80.0%
3533318 4.1.1.33 beta barrels › SH3 › SH3 › SH3 › Myosin_N 0.81 55.0 5.98e-01 70.0% 88.0%
3510676 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.80 55.0 4.63e-01 71.7% 49.5%
3304602 4.1.1.427 beta barrels › SH3 › SH3 › SH3 › F-box 0.79 59.0 4.98e-01 78.3% 50.5%
3623890 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.79 55.0 4.80e-01 71.7% 60.0%
4002679 4.1.1.322 beta barrels › SH3 › SH3 › SH3 › GPKOW_C 0.78 53.0 4.18e-01 71.7% 50.8%
3244907 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.77 52.0 4.49e-01 70.0% 75.6%
2561577 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.77 53.0 5.27e-01 71.7% 70.5%
3263031 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 51.0 5.03e-01 70.0% 67.7%
4024411 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 49.0 5.17e-01 71.7% 72.7%
3868320 4.1.1.65 beta barrels › SH3 › SH3 › SH3 › 53-BP1_Tudor 0.76 55.0 5.37e-01 76.7% 76.9%
3779830 4.1.1.304 beta barrels › SH3 › SH3 › SH3 › SH3-C_UBE2O 0.75 51.0 4.37e-01 70.0% 57.8%
3246255 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 51.0 4.82e-01 70.0% 77.1%
3702915 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.75 52.0 5.26e-01 73.3% 93.3%
4953223 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.74 51.0 5.51e-01 71.7% 90.0%
3487936 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.73 51.0 4.87e-01 73.3% 80.0%
4957377 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.71 49.0 4.89e-01 71.7% 69.8%
4982561 4.1.1.28 beta barrels › SH3 › SH3 › SH3 › BPL_C 0.70 47.0 5.32e-01 70.0% 91.1%
3415045 4.1.1.92 beta barrels › SH3 › SH3 › SH3 › SH3_9 0.70 48.0 4.62e-01 71.7% 78.6%
4964699 220.1.1.219 beta barrels › PH domain-like › PH domain-like › PH domain-like › CheF-arch 0.69 46.0 3.92e-01 70.0% 84.0%
5029405 4.17.1.1 beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.68 47.0 4.86e-01 71.7% 83.6%
4139090 4.1.1.364 beta barrels › SH3 › SH3 › SH3 › GatD_N 0.68 46.0 4.83e-01 71.7% 83.6%
3259128 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 45.0 3.54e-01 70.0% 56.0%
3554995 4.1.1.1 beta barrels › SH3 › SH3 › SH3 › SH3_1 0.66 45.0 4.38e-01 73.3% 82.9%
3270836 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.66 44.0 3.57e-01 70.0% 61.7%
4327595 4.1.1.402 beta barrels › SH3 › SH3 › SH3 › DUF2761 0.64 45.0 3.91e-01 75.0% 64.2%
5049906 4.1.1.54 beta barrels › SH3 › SH3 › SH3 › SH3_2 0.64 43.0 4.35e-01 70.0% 73.3%
3710325 330.1.1.0 a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.63 43.0 3.90e-01 100.0% 53.8%
4134876 4.1.1.334 beta barrels › SH3 › SH3 › SH3 › SH3_1, SH3_2 0.62 42.0 3.13e-01 71.7% 34.5%
4948490 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.61 42.0 3.96e-01 71.7% 80.0%
4108859 2003.1.2.30 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_3 0.61 43.0 3.41e-01 75.0% 93.8%
4862553 2003.1.2.24 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Pyr_redox_2 0.60 37.0 3.20e-01 73.3% 37.0%
4208229 4.8.1.5 beta barrels › SH3 › Chromo domain-like › Chromo domain-like › LytTR 0.60 41.0 4.37e-01 71.7% 100.0%
5752 230.1.1.3 a+b two layers › T-fold › Tetrahydrobiopterin biosynthesis enzymes-like › Tetrahydrobiopterin biosynthesis enzymes-like › PTPS 0.59 48.0 3.60e-01 93.3% 83.4%
3230533 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.59 39.0 4.27e-01 76.7% 93.3%
5055079 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.59 43.0 4.40e-01 81.7% 95.0%
4441750 2.4.1.7 beta barrels › OB-fold › MOP-like › MOP-like › OB_MalK 0.58 44.0 4.57e-01 80.0% 87.3%
4982571 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.57 42.0 4.25e-01 80.0% 93.1%
4998118 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.57 42.0 4.15e-01 81.7% 87.7%
3203103 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.57 46.0 3.09e-01 95.0% 69.1%
4792845 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.56 39.0 2.76e-01 73.3% 72.1%
3183315 2003.1.2.16 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3,NAD_binding_8 0.56 46.0 3.03e-01 96.7% 72.2%
3997716 708.1.1.4 beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › FLYWCH 0.56 41.0 3.86e-01 80.0% 82.7%
4051690 220.1.1.126 beta barrels › PH domain-like › PH domain-like › PH domain-like › Ycf4 0.55 37.0 3.22e-01 71.7% 80.0%
3206852 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.55 39.0 2.58e-01 91.7% 17.4%
4533523 4263.2.1.1 a+b two layers › TTHA1528-like › FtsH Periplasmic Domain › FtsH Periplasmic Domain › FtsH_ext 0.55 38.0 3.72e-01 73.3% 81.5%
3389671 633.23.1.0 alpha bundles › Bromodomain-like › Claudin › Claudin 0.54 36.0 2.58e-01 70.0% 62.6%
5075769 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.54 39.0 3.90e-01 81.7% 86.2%
3199340 2003.1.2.18 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.54 43.0 2.61e-01 96.7% 89.9%
4485519 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 42.0 3.50e-01 88.3% 62.7%
5014724 295.1.1.51 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › FtsQ_DivIB_C 0.53 44.0 3.82e-01 96.7% 100.0%
5002760 330.7.1.2 a+b two layers › dsRBD-like › PI-Pfui intein middle domain › PI-Pfui intein middle domain › HicA_toxin 0.53 41.0 3.89e-01 83.3% 90.0%
3603493 2003.1.2.12 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › DAO 0.53 42.0 3.00e-01 95.0% 95.6%
4070152 2003.1.2.15 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › FAD_binding_3 0.53 42.0 2.70e-01 95.0% 52.4%
4031001 2003.1.3.6 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › Nucleotide-binding domain › Pyr_redox_3 0.53 44.0 2.78e-01 98.3% 90.3%
4970510 56.2.1.1 beta sandwiches › Epsilon subunit of F1F0-ATP synthase-N › CO dehydrogenase accessory protein CooT › CO dehydrogenase accessory protein CooT › CooT 0.53 38.0 3.82e-01 81.7% 87.7%
4595166 5076.2.1.0 alpha complex topology › Mitochondrial ADP/ATP carrier-like › Putative sulfate permease CysZ › Putative sulfate permease CysZ 0.52 41.0 2.79e-01 90.0% 23.1%
3256843 220.1.1.8 beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.52 36.0 3.15e-01 75.0% 66.7%
4000394 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.52 35.0 3.42e-01 70.0% 91.4%
3207383 206.1.1.1 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase 0.52 39.0 2.52e-01 83.3% 23.0%
3861438 220.1.1.174 beta barrels › PH domain-like › PH domain-like › PH domain-like › Cybc1_Eros 0.51 41.0 3.27e-01 88.3% 46.7%
3630433 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.51 39.0 3.37e-01 93.3% 66.1%
4883390 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 35.0 2.57e-01 73.3% 85.4%
5038289 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.50 40.0 3.16e-01 90.0% 96.3%