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MW460246.1__QRE00409.1__X__00051

Bact-Vir

MW460246.1__QRE00409.1__X__00051

Identity

Accession:
MW460246 ↗
Kingdom:
phage

Quality

74.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-56
PDB
Domain cluster: representative
CATH (49)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1tifA00 3.10.20.80 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Translation initiation factor 3 (IF-3), N-terminal domain 0.75 63.0 5.45e-01 100.0% 59.2%
3hz7A00 3.30.110.40 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › TusA-like domain 0.70 54.0 4.72e-01 87.0% 95.9%
3rh7A02 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.68 58.0 4.26e-01 100.0% 55.0%
3oajA02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.67 51.0 3.66e-01 89.1% 27.8%
1mhxA00 3.10.20.10 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.66 56.0 5.06e-01 100.0% 83.1%
2qy6A01 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.65 52.0 3.36e-01 93.5% 85.1%
2ei0A02 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.65 47.0 3.46e-01 89.1% 25.7%
2qqzA01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.64 49.0 3.80e-01 89.1% 37.4%
4kyxA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.63 53.0 3.86e-01 100.0% 59.7%
5efrA02 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.62 50.0 4.52e-01 100.0% 100.0%
4erdA00 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.62 46.0 3.70e-01 87.0% 80.6%
5zliA01 3.10.20.70 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Glutamine synthetase, N-terminal domain 0.62 51.0 4.05e-01 100.0% 69.8%
2x8xX01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.62 48.0 4.33e-01 100.0% 89.5%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.61 46.0 4.21e-01 91.3% 60.6%
6j09A04 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.60 50.0 4.37e-01 100.0% 94.8%
3lm4A01 3.10.180.10 Alpha Beta › Roll › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase; domain 1 › 2,3-Dihydroxybiphenyl 1,2-Dioxygenase, domain 1 0.60 44.0 3.37e-01 89.1% 32.4%
1pjzA00 3.40.50.150 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Vaccinia Virus protein VP39 0.59 44.0 3.07e-01 93.5% 85.1%
4k3cA01 3.10.20.310 Alpha Beta › Roll › Ubiquitin-like (UB roll) › membrane protein fhac 0.59 47.0 4.09e-01 100.0% 91.5%
1kyzA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.59 47.0 3.72e-01 93.5% 48.5%
2pmzB05 3.90.1070.20 Alpha Beta › Alpha-Beta Complex › Hypothetical Protein Ta0175; Chain: A, domain 2 › 0.59 46.0 4.09e-01 100.0% 65.0%
3latA00 3.40.80.10 Alpha Beta › 3-Layer(aba) Sandwich › Lysozyme-like › Peptidoglycan recognition protein-like 0.58 47.0 3.09e-01 91.3% 69.1%
7q5yB01 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.58 42.0 3.40e-01 91.3% 62.5%
1wp0A00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.57 48.0 3.38e-01 95.7% 61.3%
2jigA01 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.57 41.0 2.80e-01 82.6% 95.1%
1xhsA00 3.10.490.10 Alpha Beta › Roll › Hypothetical upf0131 protein ytfp › Gamma-glutamyl cyclotransferase-like 0.57 46.0 3.68e-01 100.0% 80.5%
3adyA00 3.55.50.60 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › DotD protein 0.57 47.0 3.68e-01 91.3% 83.3%
4i68A00 3.30.70.1800 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 44.0 3.64e-01 89.1% 45.6%
2zxrA01 2.40.50.460 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.57 39.0 2.76e-01 73.9% 82.9%
2ghfA01 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.57 48.0 3.94e-01 100.0% 80.9%
3op6A00 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.57 38.0 2.82e-01 71.7% 89.7%
2c7yA00 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.56 41.0 2.52e-01 87.0% 62.9%
3cz8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.56 45.0 4.32e-01 97.8% 80.7%
4dywA00 3.90.79.10 Alpha Beta › Alpha-Beta Complex › Nucleoside Triphosphate Pyrophosphohydrolase › Nucleoside Triphosphate Pyrophosphohydrolase 0.56 42.0 3.35e-01 100.0% 64.3%
2p5zX02 3.55.50.10 Alpha Beta › 3-Layer(bab) Sandwich › Phage tail protein beta-alpha-beta fold › Baseplate protein-like domains 0.55 47.0 3.74e-01 100.0% 92.8%
3o27B00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.55 38.0 3.59e-01 73.9% 80.7%
5eupA00 3.30.710.10 Alpha Beta › 2-Layer Sandwich › Potassium Channel Kv1.1; Chain A › Potassium Channel Kv1.1; Chain A 0.54 43.0 3.23e-01 100.0% 35.0%
5jh8A02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.54 42.0 3.89e-01 100.0% 65.7%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.54 43.0 3.17e-01 97.8% 46.6%
2a3vA02 1.10.443.10 Mainly Alpha › Orthogonal Bundle › hpI Integrase; Chain A › Intergrase catalytic core 0.54 37.0 2.45e-01 71.7% 77.7%
2l66A00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.54 39.0 3.78e-01 80.4% 90.6%
4ifdG01 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.53 39.0 3.72e-01 100.0% 65.6%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.53 41.0 2.62e-01 89.1% 69.2%
2hoeA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.53 42.0 4.01e-01 95.7% 93.1%
4wiwA02 3.10.50.10 Alpha Beta › Roll › Chitinase A; domain 3 › 0.52 46.0 4.03e-01 100.0% 81.2%
2yzsA02 1.20.120.920 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › CRISPR-associated endonuclease Cas1, C-terminal domain 0.51 39.0 2.65e-01 95.7% 86.8%
1mvfD00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.51 34.0 3.48e-01 71.7% 100.0%
5hvqC01 3.90.1150.220 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › 0.50 39.0 3.49e-01 97.8% 85.0%
1ub4C00 2.10.260.10 Mainly Beta › Ribbon › Pemi-like Protein 1; Chain: D › 0.50 35.0 3.06e-01 73.9% 61.3%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.50 43.0 2.90e-01 97.8% 77.8%
ECOD (54)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3275203 221.2.1.1 a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.84 72.0 5.91e-01 100.0% 52.9%
3502554 221.2.1.1 a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.80 69.0 6.24e-01 100.0% 72.3%
3668077 221.2.1.1 a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.79 67.0 5.76e-01 100.0% 60.0%
4108510 221.2.1.1 a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.76 65.0 5.49e-01 100.0% 57.5%
4500967 221.2.1.1 a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.74 62.0 5.29e-01 100.0% 56.2%
4031525 221.2.1.1 a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.73 61.0 5.81e-01 100.0% 81.8%
3309149 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.69 61.0 5.46e-01 100.0% 89.2%
4957877 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.68 56.0 5.06e-01 100.0% 98.6%
4232129 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.68 51.0 3.83e-01 89.1% 32.0%
4999907 2484.1.1.337 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RRXRR 0.67 53.0 3.33e-01 100.0% 15.6%
5011560 239.4.1.0 beta barrels › Ribosomal protein L25-like › Glutamine synthetase, N-terminal domain › Glutamine synthetase, N-terminal domain 0.66 53.0 4.29e-01 100.0% 75.2%
3378706 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.66 50.0 4.34e-01 89.1% 52.5%
3739576 327.11.2.27 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › KH_Vigilin 0.66 44.0 4.27e-01 71.7% 60.0%
3661102 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.65 45.0 4.34e-01 76.1% 67.3%
2452648 221.2.1.1 a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.64 51.0 4.32e-01 100.0% 50.5%
3554834 386.1.1.273 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › Zn_SUZ12 0.64 51.0 4.06e-01 100.0% 57.5%
4856785 221.2.1.1 a+b two layers › beta-Grasp › IF3-N › IF3-N › IF3_N 0.64 52.0 4.54e-01 100.0% 57.5%
3655904 221.1.1.82 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PADRE 0.63 52.0 4.62e-01 100.0% 81.9%
3374702 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.62 50.0 4.55e-01 100.0% 71.4%
3482809 221.4.1.0 a+b two layers › beta-Grasp › Nudix › Nudix 0.62 50.0 3.13e-01 100.0% 33.0%
3387634 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.62 49.0 4.50e-01 100.0% 91.4%
4044393 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.61 49.0 4.45e-01 100.0% 91.4%
3932780 226.1.1.0 a+b two layers › POZ domain › POZ domain › POZ domain 0.60 49.0 4.01e-01 100.0% 49.0%
3601248 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.59 46.0 3.86e-01 100.0% 94.0%
4033374 3070.1.1.0 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins 0.59 50.0 4.17e-01 100.0% 63.5%
1948837 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.58 42.0 4.21e-01 78.3% 97.9%
3811388 221.1.1.82 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PADRE 0.58 45.0 4.15e-01 100.0% 88.6%
3224315 207.1.1.0 beta duplicates or obligate multimers › Single-stranded right-handed beta-helix › Leucine-rich repeats › Leucine-rich repeats 0.58 45.0 2.81e-01 100.0% 13.0%
4946895 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.57 40.0 3.97e-01 76.1% 96.0%
5050000 211.1.1.0 a+b two layers › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase › Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase 0.57 41.0 3.97e-01 89.1% 67.8%
5032935 304.8.1.112 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › MazE_antitoxin 0.56 42.0 3.19e-01 89.1% 35.6%
3604277 327.11.2.82 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › PF27275 0.56 41.0 3.72e-01 89.1% 56.0%
3038102 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.56 38.0 3.58e-01 71.7% 94.6%
3943692 3070.1.1.2 a+b complex topology › N0 domain in phage tail proteins and secretins-like › N0 domain in phage tail proteins and secretins › N0 domain in phage tail proteins and secretins › Phage_GPD 0.55 47.0 3.79e-01 100.0% 94.7%
3700148 2486.1.1.3 a/b three-layered sandwiches › ClpP/crotonase › ClpP/crotonase › ClpP/crotonase › Carboxyl_trans 0.55 45.0 2.49e-01 95.7% 6.5%
3786028 101.1.2.86 alpha arrays › HTH › HTH › winged helix domain › SMC_Nse1 0.55 42.0 3.02e-01 82.6% 43.4%
4881205 3121.1.1.1 a+b duplicates or obligate multimers › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › Polypeptide transport-associated (POTRA) domain › POTRA 0.54 41.0 3.84e-01 100.0% 87.3%
3396525 327.11.2.20 a+b two layers › Alpha-lytic protease prodomain-like › KH-domains › Eukaryotic type KH-domain (KH-domain type I) › BICC1_KH 0.54 41.0 3.66e-01 91.3% 66.7%
1282166 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.54 37.0 3.49e-01 73.9% 81.7%
4941025 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.54 37.0 3.71e-01 76.1% 98.0%
3934650 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.53 42.0 4.19e-01 97.8% 86.0%
3806126 7510.1.1.1 a/b three-layered sandwiches › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Isocitrate/Isopropylmalate dehydrogenase-like › Iso_dh 0.53 40.0 2.78e-01 91.3% 79.5%
5069872 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.53 40.0 3.19e-01 95.7% 98.3%
2529893 284.2.1.0 a+b two layers › FKBP-like › Chitinase insertion domain › Chitinase insertion domain 0.52 46.0 4.01e-01 100.0% 80.0%
5031988 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.52 38.0 3.78e-01 80.4% 98.0%
4052318 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.52 44.0 3.15e-01 100.0% 68.0%
5034767 221.1.1.50 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › DUF4430 0.52 44.0 3.55e-01 97.8% 57.9%
4930879 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.52 36.0 3.52e-01 73.9% 94.0%
4090113 523.1.1.1 a+b two layers › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal protein L9 C-domain › Ribosomal_L9_C 0.52 40.0 3.18e-01 89.1% 66.7%
5018084 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.51 39.0 3.18e-01 91.3% 70.5%
4994020 1.1.3.0 beta barrels › cradle loop barrel › RIFT-related › AbrB 0.51 35.0 3.37e-01 73.9% 75.9%
3953985 1.1.3.2 beta barrels › cradle loop barrel › RIFT-related › AbrB › MazE_antitoxin 0.51 35.0 3.61e-01 76.1% 95.6%
3730782 386.1.1.1 few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › zf-C2H2 0.51 39.0 3.35e-01 89.1% 55.0%
2067706 2004.1.1.54 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Septin 0.51 38.0 2.44e-01 89.1% 19.9%