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MW460246.1__QRE00433.1__X__00075

Bact-Vir

MW460246.1__QRE00433.1__X__00075

Identity

Accession:
MW460246 ↗
Kingdom:
phage

Quality

94.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lindbergviridae› Irusalimvirus› Burkholderia_phage_BCSR52

TaxID: 2805748

Cluster

Singleton — not in a non-trivial cluster

3D Structure

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Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-76
PDB
Domain cluster: representative
CATH (45)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2oc3A00 3.90.190.10 Alpha Beta › Alpha-Beta Complex › Protein-Tyrosine Phosphatase; Chain A › Protein tyrosine phosphatase superfamily 0.69 43.0 2.86e-01 77.3% 15.1%
2l89A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.68 55.0 4.66e-01 89.4% 53.7%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.67 48.0 5.11e-01 89.4% 87.7%
1xteA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.67 51.0 4.27e-01 83.3% 52.6%
3c7fA02 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.65 46.0 2.93e-01 75.8% 71.3%
4ld6A00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 51.0 4.24e-01 90.9% 50.4%
3p0cA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 49.0 4.21e-01 89.4% 56.8%
2dmyA00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.61 45.0 4.00e-01 78.8% 62.9%
1ib8A02 2.30.30.180 Mainly Beta › Roll › SH3 type barrels. › Ribosome maturation factor RimP, C-terminal domain 0.61 46.0 4.60e-01 93.9% 80.6%
2cqaA01 2.40.50.360 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RuvBL1 DNA/RNA binding domain 0.61 44.0 4.29e-01 83.3% 68.9%
2rajA02 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.61 46.0 3.77e-01 83.3% 61.9%
2chrA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.60 42.0 3.47e-01 74.2% 53.5%
2l33A00 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.60 42.0 3.79e-01 80.3% 53.8%
1rerA01 2.60.98.10 Mainly Beta › Sandwich › Tick-borne Encephalitis virus Glycoprotein; domain 1 › Tick-borne Encephalitis virus Glycoprotein, domain 1 0.60 46.0 3.82e-01 86.4% 81.7%
4fpvB00 3.60.10.10 Alpha Beta › 4-Layer Sandwich › Deoxyribonuclease I; Chain A › Endonuclease/exonuclease/phosphatase 0.60 40.0 2.75e-01 71.2% 43.2%
2egcA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.59 48.0 4.62e-01 93.9% 78.7%
4ntqB00 3.30.2450.20 Alpha Beta › 2-Layer Sandwich › Secreted effector protein pipB2 fold › 0.59 43.0 3.33e-01 77.3% 100.0%
3u1wA02 3.10.450.360 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.59 44.0 4.48e-01 81.8% 84.8%
2xglA00 3.10.450.300 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › YebF/Colicin-M immunity protein 0.59 43.0 3.96e-01 80.3% 80.2%
3cyjA01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.58 40.0 3.39e-01 74.2% 46.7%
1sb2B00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.58 46.0 3.76e-01 87.9% 79.8%
2nugB02 3.30.160.20 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.57 40.0 3.93e-01 74.2% 74.6%
1kyfA01 2.60.40.1230 Mainly Beta › Sandwich › Immunoglobulin-like › Gamma-adaptin ear (GAE) domain 0.57 39.0 3.17e-01 72.7% 76.9%
1j3mA00 3.30.310.70 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TT1751-like domain 0.56 45.0 3.72e-01 90.9% 86.6%
1xe4A01 3.40.630.30 Alpha Beta › 3-Layer(aba) Sandwich › Aminopeptidase › Gcn5-related N-acetyltransferase (GNAT) 0.56 44.0 3.31e-01 86.4% 67.7%
4i86A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.56 42.0 3.66e-01 81.8% 69.6%
3mcrA00 3.30.460.80 Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › NADH:ubiquinone oxidoreductase Nqo5 subunit 0.55 44.0 3.52e-01 93.9% 58.4%
1iz6A01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.55 42.0 4.23e-01 89.4% 84.1%
2hzgB01 3.30.390.10 Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain 0.55 41.0 3.31e-01 83.3% 95.8%
1ylxA00 3.30.70.1480 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › GK1464-like 0.55 39.0 3.43e-01 75.8% 52.5%
1v7pB00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.55 42.0 3.49e-01 86.4% 81.1%
4jvuA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 40.0 3.41e-01 78.8% 90.0%
4cgyA03 2.70.20.10 Mainly Beta › Distorted Sandwich › Topoisomerase I; domain 3 › Topoisomerase I, domain 3 0.53 39.0 3.29e-01 81.8% 76.6%
1eo9A00 2.60.130.10 Mainly Beta › Sandwich › Protocatechuate 3,4-Dioxygenase, subunit A › Aromatic compound dioxygenase 0.53 43.0 3.25e-01 100.0% 67.8%
6vg1A01 2.60.40.60 Mainly Beta › Sandwich › Immunoglobulin-like › Cadherins 0.53 37.0 3.37e-01 75.8% 79.6%
5c94A00 2.40.10.250 Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 0.52 42.0 3.59e-01 92.4% 94.8%
1imuA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.52 38.0 3.34e-01 81.8% 66.4%
6pwkA02 3.20.20.450 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › EAL domain 0.51 42.0 3.01e-01 97.0% 44.2%
4iknA01 2.60.40.1170 Mainly Beta › Sandwich › Immunoglobulin-like › Mu homology domain, subdomain B 0.51 41.0 3.30e-01 92.4% 57.3%
6etzA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 36.0 3.39e-01 75.8% 77.4%
3wyfE00 2.30.29.30 Mainly Beta › Roll › PH-domain like › Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB) 0.51 42.0 3.44e-01 100.0% 64.1%
4rt0A00 2.40.10.220 Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains 0.51 40.0 3.45e-01 87.9% 73.4%
4inaA02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.50 36.0 2.70e-01 78.8% 92.9%
4fd0A01 2.60.40.3630 Mainly Beta › Sandwich › Immunoglobulin-like › 0.50 39.0 3.73e-01 86.4% 93.7%
2ywqA00 3.30.160.100 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Ribosome hibernation promotion factor-like 0.50 37.0 3.46e-01 81.8% 81.8%
ECOD (76)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3931055 4.1.1.311 ↗ beta barrels › SH3 › SH3 › SH3 › BRWD_AD 0.73 60.0 5.76e-01 89.4% 80.0%
3417505 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.70 52.0 3.90e-01 80.3% 49.4%
145843 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.68 55.0 4.66e-01 89.4% 53.7%
3423528 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.68 49.0 3.64e-01 75.8% 61.2%
3676628 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.68 59.0 4.85e-01 97.0% 71.7%
3645842 4.1.1.162 ↗ beta barrels › SH3 › SH3 › SH3 › DUF502 0.68 56.0 5.28e-01 93.9% 75.0%
3458064 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.67 47.0 5.11e-01 74.2% 98.1%
5059130 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 48.0 4.11e-01 78.8% 81.8%
5075212 802.1.1.1 ↗ a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 › BFN_dom 0.65 50.0 4.53e-01 83.3% 62.2%
3798524 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.65 52.0 4.34e-01 87.9% 60.9%
3289254 220.1.1.82 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › bPH_6 0.65 52.0 4.64e-01 87.9% 86.3%
4599589 5.1.2.8 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.65 46.0 2.91e-01 75.8% 69.3%
3750522 4.1.1.218 ↗ beta barrels › SH3 › SH3 › SH3 › PWP3A-B_N 0.65 51.0 4.27e-01 89.4% 50.9%
3478366 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.64 49.0 4.26e-01 83.3% 58.1%
3315492 277.1.1.0 ↗ a+b two layers › PX domain › PX domain › PX domain 0.64 51.0 4.13e-01 89.4% 61.5%
3742215 2.1.1.44 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Dna2 0.64 44.0 4.01e-01 74.2% 52.2%
4959178 4252.1.1.12 ↗ beta barrels › AttH-like › AttH-like › AttH-like › DUF7064 0.64 47.0 3.91e-01 78.8% 57.5%
3279083 4.6.1.7 ↗ beta barrels › SH3 › PRC-barrel domain › PRC-barrel domain › PF26205 0.64 51.0 4.91e-01 87.9% 82.7%
1148135 295.1.1.11 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › CdiI_N 0.64 42.0 3.29e-01 72.7% 30.8%
4013811 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.64 54.0 4.88e-01 93.9% 84.4%
3572423 4.1.1.12 ↗ beta barrels › SH3 › SH3 › SH3 › PWWP 0.64 53.0 4.36e-01 92.4% 50.8%
3557649 4.8.1.20 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › PWP3A-B_N 0.64 50.0 4.33e-01 89.4% 54.3%
2157301 4.1.1.78 ↗ beta barrels › SH3 › SH3 › SH3 › TTD 0.63 52.0 5.04e-01 89.4% 82.2%
4024735 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.63 52.0 5.18e-01 100.0% 85.7%
3205559 4.8.1.22 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › DUF7025 0.63 53.0 4.15e-01 93.9% 52.4%
3667278 5.1.2.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed 0.63 46.0 3.73e-01 78.8% 60.0%
3673789 708.1.1.1 ↗ beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM 0.63 43.0 4.32e-01 72.7% 77.9%
3911618 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.63 50.0 3.75e-01 89.4% 57.1%
4990844 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.62 47.0 4.05e-01 81.8% 81.0%
3993718 3256.1.1.0 ↗ a+b two layers › DUF2233 N-terminal domain › DUF2233 N-terminal domain › DUF2233 N-terminal domain 0.62 47.0 4.53e-01 81.8% 92.0%
4942589 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.62 48.0 4.76e-01 86.4% 84.3%
4057742 2.4.1.11 ↗ beta barrels › OB-fold › MOP-like › MOP-like › TOBE_3 0.62 45.0 4.61e-01 84.8% 80.0%
3399965 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.39e-01 89.4% 62.2%
3791752 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.62 48.0 4.85e-01 93.9% 86.2%
3997130 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.61 52.0 4.55e-01 93.9% 85.0%
3643549 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.61 47.0 4.45e-01 86.4% 70.0%
5082512 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.61 42.0 3.67e-01 74.2% 47.3%
3716770 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.61 42.0 3.65e-01 72.7% 67.6%
3485727 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.61 47.0 4.15e-01 83.3% 65.3%
3966871 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.60 46.0 3.71e-01 83.3% 50.8%
4549698 4.8.1.10 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like › MSL3_chromo-like 0.60 49.0 4.44e-01 92.4% 66.3%
3953498 4.1.1.439 ↗ beta barrels › SH3 › SH3 › SH3 › PF26205 0.60 51.0 4.97e-01 98.5% 88.0%
4950455 243.3.1.0 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.60 45.0 4.46e-01 80.3% 84.3%
5044388 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 42.0 4.68e-01 77.3% 100.0%
None — 0.59 47.0 3.53e-01 87.9% 56.5%
3816110 1.1.5.33 ↗ beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 0.59 46.0 3.15e-01 83.3% 32.4%
3996907 2.1.1.27 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › RNA_pol_Rpb8 0.59 47.0 3.77e-01 86.4% 62.0%
4946993 4.1.1.479 ↗ beta barrels › SH3 › SH3 › SH3 › eIF-5a 0.59 46.0 4.58e-01 89.4% 82.9%
4336471 264.2.1.0 ↗ beta barrels › LigT-like › Prokaryotic type I DNA topoisomerase beta-barrel domain › Prokaryotic type I DNA topoisomerase beta-barrel domain 0.59 44.0 3.91e-01 81.8% 78.0%
3184113 318.1.1.0 ↗ a+b two layers › Ribosomal protein L6 › Ribosomal protein L6 › Ribosomal protein L6 0.59 43.0 3.83e-01 80.3% 55.0%
178803 243.3.1.9 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › YebF 0.59 43.0 3.96e-01 80.3% 80.2%
3774525 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.59 47.0 3.44e-01 87.9% 45.6%
3749979 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.59 41.0 3.80e-01 75.8% 55.6%
4939185 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.58 42.0 3.48e-01 75.8% 60.0%
3219409 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.58 47.0 4.21e-01 87.9% 81.1%
4389067 2003.1.2.28 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain › Lys_Orn_oxgnase 0.58 49.0 2.98e-01 98.5% 89.7%
3593482 2.1.1.135 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › DUF3592 0.58 41.0 3.63e-01 75.8% 100.0%
3517888 330.1.1.1 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like › dsrm 0.57 42.0 3.83e-01 78.8% 64.4%
3330582 330.1.1.0 ↗ a+b two layers › dsRBD-like › dsRNA-binding domain-like › dsRNA-binding domain-like 0.57 40.0 3.28e-01 72.7% 56.0%
3657113 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 42.0 3.53e-01 80.3% 70.0%
4997059 4.1.1.139 ↗ beta barrels › SH3 › SH3 › SH3 › IF5A-like_N 0.56 44.0 4.31e-01 93.9% 78.7%
5008587 2484.1.1.330 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF460 0.56 42.0 2.79e-01 80.3% 43.8%
5031732 1.1.1.8 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease › gag-asp_proteas 0.55 40.0 3.42e-01 78.8% 74.8%
5002173 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 44.0 3.99e-01 87.9% 93.3%
4991994 375.1.1.0 ↗ few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.55 39.0 4.17e-01 77.3% 90.9%
3863194 277.1.1.1 ↗ a+b two layers › PX domain › PX domain › PX domain › PX 0.54 40.0 3.39e-01 84.8% 52.3%
3286196 206.1.1.11 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.54 41.0 2.64e-01 86.4% 28.3%
4383357 2484.1.1.67 ↗ mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 0.53 39.0 3.18e-01 80.3% 81.4%
4955517 1.1.1.0 ↗ beta barrels › cradle loop barrel › RIFT-related › acid protease 0.53 38.0 3.26e-01 74.2% 76.4%
3962565 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 37.0 3.29e-01 74.2% 49.0%
3725926 2.1.1.94 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › TLP1_add_C 0.52 39.0 3.67e-01 83.3% 90.6%
3788782 2004.1.1.199 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_23,SbcC_Walker_B 0.52 43.0 2.68e-01 100.0% 15.5%
3837783 3291.1.1.50 ↗ alpha bundles › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › Charged multivesicular body protein 3 (CHMP3)-related › FmiP_Thoc5 0.52 38.0 3.33e-01 81.8% 53.6%
4977196 2003.1.5.81 ↗ a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › Methyltransf_25 0.51 43.0 2.94e-01 95.5% 92.5%
3589823 295.1.1.0 ↗ a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain 0.51 39.0 3.96e-01 93.9% 84.6%
5061444 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 36.0 3.36e-01 75.8% 76.5%