Back to structures

MW460247.1__QRE00480.1__X__00006

Bact-Vir

MW460247.1__QRE00480.1__X__00006

Identity

Accession:
MW460247 ↗
Kingdom:
phage

Quality

77.0 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 8-81
PDB
Domain cluster: representative
CATH (44)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2gu3A01 3.10.450.40 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 41.0 4.33e-01 73.0% 70.8%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.66 47.0 3.74e-01 74.3% 50.3%
2giaA00 2.30.31.40 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › 0.65 57.0 4.55e-01 100.0% 63.6%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.65 49.0 4.92e-01 97.3% 80.5%
1k8kD02 3.30.1460.20 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.65 58.0 4.80e-01 100.0% 79.4%
2dh2A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.64 43.0 4.06e-01 70.3% 100.0%
6u5uG07 3.30.1120.100 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › 0.64 56.0 4.62e-01 97.3% 90.2%
3a5vA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.63 44.0 3.98e-01 71.6% 97.0%
1sgoA01 3.30.2280.10 Alpha Beta › 2-Layer Sandwich › copper amine oxidase-like fold › Hypothetical protein (hspc210) 0.63 40.0 3.55e-01 74.3% 44.4%
3ebwA01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.63 53.0 4.18e-01 90.5% 51.4%
2g30A02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.62 50.0 4.29e-01 86.5% 75.9%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 54.0 4.21e-01 94.6% 85.7%
2mj7A00 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.62 51.0 4.09e-01 89.2% 62.4%
2h36X00 3.30.160.300 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.62 41.0 3.64e-01 100.0% 47.2%
2z4hA01 2.40.128.300 Mainly Beta › Beta Barrel › Lipocalin › NlpE, N-terminal domain 0.62 47.0 4.66e-01 82.4% 86.1%
1ci0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.62 55.0 4.00e-01 98.6% 91.2%
4hz9B00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 40.0 3.42e-01 74.3% 39.8%
3cc1A02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 42.0 3.98e-01 70.3% 100.0%
2sliA01 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.61 54.0 4.02e-01 100.0% 77.0%
7snsB01 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.61 48.0 3.77e-01 86.5% 84.0%
4fpwB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.61 48.0 3.68e-01 83.8% 64.0%
6ibkA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.61 42.0 3.89e-01 73.0% 100.0%
1so7A00 2.120.10.10 Mainly Beta › 6 Propeller › Neuraminidase › 0.61 42.0 2.73e-01 74.3% 30.2%
1pzdA02 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.60 49.0 4.16e-01 86.5% 80.9%
4gf3A00 3.30.1460.10 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.60 52.0 4.39e-01 95.9% 78.9%
3c6kA01 3.30.160.110 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Sirohaem synthase, central domain 0.58 42.0 3.85e-01 74.3% 73.4%
3gwiA00 3.40.1110.10 Alpha Beta › 3-Layer(aba) Sandwich › Calcium-transporting ATPase, cytoplasmic domain N › Calcium-transporting ATPase, cytoplasmic domain N 0.58 42.0 3.25e-01 75.7% 57.3%
2lpuA00 3.30.1460.50 Alpha Beta › 2-Layer Sandwich › Yope Regulator; Chain: A, › 0.58 45.0 3.71e-01 86.5% 91.2%
3lhnA00 2.40.128.640 Mainly Beta › Beta Barrel › Lipocalin › 0.58 45.0 4.01e-01 85.1% 66.4%
4htgA03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.57 46.0 4.60e-01 89.2% 86.1%
4pj2A00 2.40.128.460 Mainly Beta › Beta Barrel › Lipocalin › Periplasmic lysozyme inhibitor of I-type lysozyme 0.57 40.0 3.49e-01 74.3% 87.6%
8bddA02 2.70.98.70 Mainly Beta › Distorted Sandwich › Beta-galactosidase; Chain A, domain 5 › 0.57 47.0 3.16e-01 100.0% 64.4%
4lgvD02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.56 44.0 3.08e-01 87.8% 73.6%
1zldA00 2.60.40.1920 Mainly Beta › Sandwich › Immunoglobulin-like › Proteinaceous host-selective toxin ToxA 0.56 50.0 4.50e-01 100.0% 93.1%
1ah5A03 3.30.160.40 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Porphobilinogen deaminase, C-terminal domain 0.56 45.0 4.28e-01 89.2% 76.7%
2q7eA02 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.55 46.0 3.40e-01 95.9% 64.2%
4i2yA01 2.40.155.10 Mainly Beta › Beta Barrel › Green Fluorescent Protein › Green fluorescent protein 0.55 37.0 2.69e-01 71.6% 83.1%
2bseA00 2.60.40.1830 Mainly Beta › Sandwich › Immunoglobulin-like › Phage tail base-plate Siphoviridae RBP, head domain 0.54 38.0 3.42e-01 74.3% 97.2%
7vd7A01 3.10.450.530 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › Ribonuclease toxin, BrnT, of type II toxin-antitoxin system 0.54 39.0 3.67e-01 75.7% 63.0%
2xepB01 3.10.450.280 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.54 44.0 3.84e-01 89.2% 97.4%
1i72A00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.54 43.0 2.97e-01 86.5% 74.9%
6pxcA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.51 44.0 4.03e-01 100.0% 75.0%
3ijtB00 3.30.530.20 Alpha Beta › 2-Layer Sandwich › Alpha-D-Glucose-1,6-Bisphosphate; Chain A, domain 4 › START domain 0.51 41.0 3.36e-01 89.2% 79.0%
4bs9A05 3.30.160.660 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › 0.51 41.0 3.59e-01 100.0% 57.9%
ECOD (66)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3702663 881.1.1.0 a+b three layers › Mog1p/PsbP-like › Mog1p/PsbP-like › Mog1p/PsbP-like 0.77 55.0 4.34e-01 74.3% 39.3%
3368252 5.1.4.164 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_VPS8 0.73 52.0 3.19e-01 74.3% 23.1%
5053933 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.73 43.0 4.61e-01 70.3% 67.7%
3934097 4099.1.1.0 a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like 0.73 46.0 3.72e-01 71.6% 34.3%
3575356 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.72 50.0 3.25e-01 73.0% 28.1%
3706628 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.71 50.0 3.14e-01 74.3% 23.8%
4459482 6129.1.1.1 beta barrels › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › Repulsive guidance molecule (RGM) family › VWD 0.69 54.0 3.87e-01 83.8% 47.9%
3742644 5.1.4.342 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_EDC4L 0.69 49.0 3.06e-01 74.3% 24.3%
3171148 12.3.1.9 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_81 0.69 49.0 3.16e-01 74.3% 40.9%
3476559 5.1.13.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › Propeller domain of DCAF15 › DCAF15_WD40 0.69 49.0 3.11e-01 74.3% 25.5%
3725709 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.69 49.0 4.26e-01 74.3% 65.5%
4195924 5.1.4.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.68 48.0 3.00e-01 74.3% 34.3%
3797604 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.68 49.0 3.09e-01 74.3% 27.1%
3936785 216.1.1.0 a+b two layers › UBC-like › UBC-like › UBC-like 0.68 45.0 3.99e-01 70.3% 47.6%
3932732 5.1.4.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.68 48.0 3.05e-01 74.3% 27.1%
3626243 5.1.4.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.67 48.0 2.99e-01 74.3% 34.5%
3171037 5.1.4.378 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PF27702 0.67 48.0 2.99e-01 74.3% 40.8%
3873966 5.1.4.277 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_EIPR1 0.67 48.0 3.03e-01 74.3% 31.1%
3375268 5084.5.1.3 beta barrels › Outer membrane meander beta-barrels › Porins › Porin › Porin_3 0.67 48.0 3.42e-01 75.7% 25.9%
3616309 5.1.5.236 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed › Beta-prop_WDR3_1st 0.67 53.0 3.32e-01 86.5% 96.4%
5051838 300.1.1.0 a+b three layers › Phospholipase D/nuclease › Phospholipase D/nuclease › Phospholipase D/nuclease 0.66 49.0 4.04e-01 78.4% 74.1%
3925946 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 48.0 2.98e-01 75.7% 22.9%
3559756 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.66 45.0 2.97e-01 71.6% 29.1%
3693387 5.1.4.265 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40, Beta-prop_WDR3_1st 0.65 54.0 3.36e-01 91.9% 93.3%
3962288 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.65 44.0 3.66e-01 70.3% 43.8%
3400513 77.1.1.4 beta meanders › open-sided beta-meander › Outer surface protein › Outer surface protein › Chitin_bind_4 0.64 45.0 4.49e-01 74.3% 74.4%
3408388 4.1.1.326 beta barrels › SH3 › SH3 › SH3 › Chitin_bind_4 0.64 47.0 4.63e-01 78.4% 75.0%
3215377 5.1.4.62 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PROPPIN 0.63 52.0 3.33e-01 91.9% 91.8%
4054729 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.62 46.0 4.67e-01 100.0% 77.3%
3270919 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.62 50.0 4.31e-01 86.5% 78.3%
4020163 216.1.1.1 a+b two layers › UBC-like › UBC-like › UBC-like › UQ_con 0.62 44.0 3.51e-01 74.3% 77.3%
3394329 5.1.4.45 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › PQQ_3 0.62 45.0 2.87e-01 75.7% 81.9%
3286246 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.61 51.0 4.58e-01 91.9% 79.8%
3695979 4210.1.1.0 a+b two layers › WGR domain › WGR domain › WGR domain 0.61 49.0 4.21e-01 86.5% 56.4%
3634882 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.61 46.0 3.02e-01 79.7% 84.3%
3271434 331.9.1.9 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › PF26171 0.60 50.0 4.30e-01 87.8% 77.3%
3583345 5.1.4.288 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › APEH_N 0.60 44.0 2.75e-01 78.4% 29.8%
3329666 5.1.4.36 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › MMS1_N 0.60 48.0 3.02e-01 86.5% 87.2%
3931614 331.9.1.2 a+b two layers › TBP-like › Subdomain of clathrin and coatomer appendage domain › Subdomain of clathrin and coatomer appendage domain › B2-adapt-app_C 0.60 48.0 4.13e-01 86.5% 76.5%
3214007 145.1.1.1 alpha arrays › F-box domain › F-box domain › F-box domain › F-box 0.59 49.0 4.12e-01 90.5% 70.4%
3947246 331.3.1.19 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › VanA_C 0.59 49.0 3.52e-01 87.8% 69.0%
4115704 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.59 42.0 4.21e-01 98.6% 73.3%
4927548 331.3.1.9 a+b two layers › TBP-like › Bet v1-like › Bet v1-like › AHSA1 0.58 44.0 3.79e-01 81.1% 56.7%
3405513 210.1.2.8 a+b four layers › Ntn/PP2C › Ntn › Penicillin acylase, catalytic domain › TANGO2 0.58 47.0 3.21e-01 90.5% 86.4%
222972 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.57 46.0 4.41e-01 89.2% 76.4%
5039832 12.3.1.0 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich 0.57 46.0 3.53e-01 86.5% 84.2%
3273263 5.1.4.169 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Beta-prop_RSE1_2nd 0.57 44.0 2.77e-01 83.8% 82.9%
3415186 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.56 45.0 2.96e-01 89.2% 69.0%
3722817 206.1.1.11 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › APH 0.56 40.0 2.53e-01 74.3% 56.4%
3823102 5.3.1.0 beta duplicates or obligate multimers › beta-propeller-like › beta-Prism II › beta-Prism II 0.56 47.0 3.78e-01 90.5% 97.1%
3591361 206.1.1.9 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › RIO1 0.56 39.0 2.67e-01 74.3% 49.2%
3316054 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.56 47.0 2.98e-01 97.3% 31.3%
3403847 9.1.1.47 beta barrels › Lipocalins/Streptavidin › Lipocalins › Lipocalins › Chitin_bind_4 0.55 44.0 4.17e-01 87.8% 100.0%
3818630 897.1.1.1 a+b two layers › Acidic mitochondrial matrix protein p32-like › Acidic mitochondrial matrix protein p32 › Acidic mitochondrial matrix protein p32 › MAM33 0.55 48.0 3.67e-01 100.0% 74.3%
4220705 289.1.1.1 a+b complex topology › Peptide deformylase › Peptide deformylase › Peptide deformylase › Pep_deformylase 0.54 48.0 3.63e-01 100.0% 57.8%
3702931 331.10.2.0 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase 0.54 45.0 3.53e-01 93.2% 61.3%
4009943 274.1.1.0 a+b two layers › Pili subunits › Pili subunits › Pili subunits 0.54 45.0 3.78e-01 91.9% 71.2%
4638787 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.53 41.0 4.06e-01 90.5% 80.0%
4768398 331.10.1.1 a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › S-adenosylmethionine decarboxylase › SAM_decarbox 0.53 43.0 3.08e-01 89.2% 86.3%
3711682 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 37.0 2.42e-01 74.3% 33.2%
5012155 4221.1.1.0 a+b two layers › YkuJ-like › YkuJ-like › YkuJ-like 0.52 44.0 4.45e-01 97.3% 95.9%
3783034 12.3.1.9 beta sandwiches › Glycosyl hydrolase domain-like › supersandwich › supersandwich › Glyco_hydro_81 0.52 40.0 2.71e-01 85.1% 77.7%
3929507 243.3.1.0 a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin 0.52 41.0 3.76e-01 83.8% 96.8%
4216680 330.4.1.1 a+b two layers › dsRBD-like › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobilinogen deaminase (hydroxymethylbilane synthase), C-terminal domain › Porphobil_deamC 0.52 41.0 3.87e-01 91.9% 71.0%
4029739 9.8.1.1 beta barrels › Lipocalins/Streptavidin › Dipeptidyl peptidase I (cathepsin C), exclusion domain › Dipeptidyl peptidase I (cathepsin C), exclusion domain › CathepsinC_exc 0.51 45.0 3.86e-01 98.6% 90.0%
3230015 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.51 42.0 2.70e-01 100.0% 90.9%
D2 high residues 89-165
PDB