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MW460247.1__QRE00576.1__X__00102

Bact-Vir

MW460247.1__QRE00576.1__X__00102

Identity

Accession:
MW460247 ↗
Kingdom:
phage

Quality

94.0 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-63
PDB
Domain cluster: representative
CATH (38)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3d4rE01 2.40.128.400 Mainly Beta › Beta Barrel › Lipocalin › 0.68 45.0 4.08e-01 100.0% 48.8%
4zohB02 3.30.465.10 Alpha Beta › 2-Layer Sandwich › Uridine Diphospho-n-acetylenolpyruvylglucosamine Reductase; domain 3 › 0.59 50.0 4.22e-01 100.0% 91.7%
3uh8A00 2.60.40.3350 Mainly Beta › Sandwich › Immunoglobulin-like › 0.59 46.0 3.71e-01 86.4% 77.1%
4yrdA02 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.59 51.0 4.11e-01 100.0% 52.1%
1a0iA01 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.58 49.0 4.43e-01 96.6% 74.7%
3db0B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.58 43.0 3.46e-01 81.4% 73.4%
2oviA00 3.40.1570.10 Alpha Beta › 3-Layer(aba) Sandwich › Heme iron utilization protein-like fold › HemS/ChuS/ChuX like domains 0.58 42.0 3.22e-01 81.4% 65.8%
2qbuA02 3.30.950.10 Alpha Beta › 2-Layer Sandwich › Methyltransferase, Cobalt-precorrin-4 Transmethylase; Domain 2 › Tetrapyrrole methylase, C-terminal domain 0.57 47.0 4.16e-01 98.3% 86.5%
3lb6D02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 41.0 3.57e-01 76.3% 79.3%
3kyfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.57 42.0 3.48e-01 81.4% 64.0%
7zxkB01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.57 40.0 3.66e-01 74.6% 87.3%
3zn6A02 2.60.40.3410 Mainly Beta › Sandwich › Immunoglobulin-like › 0.56 49.0 4.36e-01 100.0% 98.9%
4lr4A02 2.60.120.1430 Mainly Beta › Sandwich › Jelly Rolls › 0.56 50.0 3.58e-01 100.0% 53.6%
2aefA03 3.30.70.1450 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Regulator of K+ conductance, C-terminal domain 0.55 46.0 4.32e-01 100.0% 78.5%
1burS00 3.30.190.10 Alpha Beta › 2-Layer Sandwich › Ribulose 1,5 Bisphosphate Carboxylase/Oxygenase › Ribulose bisphosphate carboxylase, small subunit 0.55 43.0 3.60e-01 94.9% 81.3%
3ddcB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.55 47.0 3.62e-01 96.6% 70.7%
2derA03 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.55 42.0 3.71e-01 83.1% 71.3%
3s98A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.55 46.0 4.18e-01 94.9% 75.6%
2jllA03 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 39.0 3.36e-01 78.0% 48.0%
1vj2A00 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.54 42.0 3.54e-01 100.0% 46.5%
3dkxA01 3.40.1310.30 Alpha Beta › 3-Layer(aba) Sandwich › Replication Protein E1; Chain: A, › 0.54 44.0 3.41e-01 100.0% 40.3%
3mpcA00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.54 47.0 4.03e-01 100.0% 77.1%
3pl0B00 2.60.120.620 Mainly Beta › Sandwich › Jelly Rolls › q2cbj1_9rhob like domain 0.54 45.0 3.07e-01 100.0% 39.7%
2aehA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.54 44.0 3.79e-01 93.2% 92.7%
1sq2N00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 45.0 3.74e-01 98.3% 90.2%
4psrA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.53 44.0 3.64e-01 100.0% 67.2%
2yuwA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 39.0 3.36e-01 79.7% 50.0%
1es6A02 2.60.510.10 Mainly Beta › Sandwich › EV matrix protein fold › EV matrix protein 0.53 38.0 3.26e-01 78.0% 96.0%
2f1lA01 2.40.30.60 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › RimM 0.53 43.0 3.89e-01 98.3% 97.8%
1a78A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.52 44.0 3.52e-01 100.0% 93.3%
2v72A00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.52 44.0 3.49e-01 100.0% 56.2%
2blfA02 2.60.40.650 Mainly Beta › Sandwich › Immunoglobulin-like › 0.52 44.0 3.57e-01 94.9% 72.8%
6rpxA01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 44.0 3.92e-01 94.9% 81.2%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.52 38.0 3.19e-01 84.7% 70.3%
2vtfA02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 43.0 3.18e-01 100.0% 64.4%
2e26A02 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.51 41.0 3.21e-01 98.3% 96.8%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 38.0 3.22e-01 84.7% 82.3%
3dtdD00 2.60.40.1880 Mainly Beta › Sandwich › Immunoglobulin-like › Invasion associated locus B (IalB) protein 0.50 35.0 2.79e-01 78.0% 40.7%
ECOD (41)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3492087 219.1.1.4 a+b complex topology › Cysteine proteinases-like › Cysteine proteinases › Cysteine proteinases › Peptidase_C2 0.74 65.0 3.99e-01 100.0% 39.4%
3552388 11.1.1.334 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TSLPR_D1 0.65 50.0 4.28e-01 83.1% 85.3%
3786245 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.65 49.0 4.43e-01 83.1% 74.7%
3264430 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 43.0 3.62e-01 76.3% 81.9%
3905463 11.1.1.565 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CRLF2_D1 0.60 45.0 3.93e-01 79.7% 84.4%
4954132 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.60 51.0 4.39e-01 96.6% 82.1%
4482267 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.60 46.0 4.21e-01 84.7% 78.8%
3420684 10.41.1.1 beta sandwiches › jelly-roll › Protein Hikeshi jelly-roll domain › Protein Hikeshi jelly-roll domain › Hikeshi-like_N 0.59 53.0 4.19e-01 100.0% 73.3%
3334372 3529.1.1.0 beta sandwiches › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain › Major vault protein (MVP) structural repeat domain 0.59 39.0 4.45e-01 83.1% 100.0%
3742942 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.58 49.0 4.17e-01 96.6% 97.0%
3883168 101.1.2.51 alpha arrays › HTH › HTH › winged helix domain › Sec62 0.57 46.0 3.63e-01 96.6% 54.5%
1937397 1137.1.1.1 a+b two layers › Tetrapyrrole methylase C-terminal domain-like › Tetrapyrrole methylase C-terminal domain › Tetrapyrrole methylase C-terminal domain › TP_methylase 0.57 47.0 4.15e-01 98.3% 85.6%
3960302 11.1.1.47 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_48 0.57 41.0 3.20e-01 78.0% 53.6%
4953657 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.57 48.0 4.19e-01 98.3% 100.0%
4992085 12.1.1.0 beta sandwiches › Glycosyl hydrolase domain-like › Glycosyl hydrolase domain › Glycosyl hydrolase domain 0.57 49.0 4.34e-01 100.0% 94.4%
4296283 1.1.8.5 beta barrels › cradle loop barrel › RIFT-related › Aminomethyltransferase beta-barrel domain › tRNA_Me_trans_C 0.56 43.0 3.89e-01 84.7% 72.9%
1111986 10.32.1.84 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like › DUF6947 0.56 50.0 3.72e-01 100.0% 61.6%
4122122 4261.1.1.0 a+b two layers › TrkA C-terminal domain-like › TrkA C-terminal domain-like › TrkA C-terminal domain-like 0.56 46.0 4.47e-01 98.3% 82.9%
3402635 1.1.7.7 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › FAD_binding_6 0.56 46.0 3.70e-01 100.0% 91.9%
3572437 12.5.1.1 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5 0.56 48.0 3.61e-01 100.0% 64.5%
3568670 11.1.4.69 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like › CATSPERE_NTD2 0.55 47.0 3.77e-01 98.3% 80.8%
3842649 11.1.1.584 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CATSPERE_NTD2 0.55 47.0 3.79e-01 98.3% 80.8%
3940366 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.55 49.0 3.51e-01 100.0% 47.1%
3610214 221.1.1.0 a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 47.0 3.86e-01 100.0% 86.1%
3512122 4081.1.1.5 beta sandwiches › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Baculovirus p35 protein-related › Peptidase_M1_N 0.54 45.0 3.28e-01 100.0% 39.5%
4931333 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 38.0 3.01e-01 79.7% 67.1%
3243463 10.32.1.0 beta sandwiches › jelly-roll › Galactose-binding domain-like › Galactose-binding domain-like 0.53 45.0 3.36e-01 100.0% 43.6%
3562774 12.5.1.0 beta sandwiches › Glycosyl hydrolase domain-like › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related › ZU5/Nup98-C/GAIN-B autoproteolytic domain-related 0.53 44.0 3.38e-01 100.0% 58.7%
3963052 4154.1.1.4 beta duplicates or obligate multimers › E2F-DP heterodimerization region › E2F-DP heterodimerization region › E2F-DP heterodimerization region › Exonuc_VII_L 0.53 32.0 2.74e-01 78.0% 32.4%
3521189 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 40.0 3.42e-01 86.4% 73.3%
3270789 11.1.1.29 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › TIG 0.52 45.0 3.93e-01 98.3% 78.9%
3576892 11.1.1.2 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › fn3 0.52 45.0 3.66e-01 100.0% 67.8%
4627913 101.1.2.90 alpha arrays › HTH › HTH › winged helix domain › HTH_9 0.51 44.0 3.82e-01 100.0% 66.3%
3251398 11.1.1.802 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF8390 0.51 44.0 3.89e-01 98.3% 83.3%
3259388 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 44.0 3.85e-01 98.3% 84.4%
4617893 11.1.1.185 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DBB 0.51 35.0 2.95e-01 76.3% 62.5%
4945637 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.67e-01 98.3% 81.0%
3248219 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 40.0 3.34e-01 91.5% 84.5%
3991612 101.1.2.0 alpha arrays › HTH › HTH › winged helix domain 0.50 43.0 2.96e-01 100.0% 31.8%
5069519 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 43.0 3.57e-01 100.0% 77.3%
5061498 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.50 42.0 2.73e-01 100.0% 28.0%
D2 high residues 69-134
PDB
Domain cluster: representative
CATH (12)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3ks6A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.55 42.0 2.99e-01 89.4% 44.0%
3i10A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.54 42.0 2.83e-01 84.8% 39.2%
1zccA00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.53 40.0 2.92e-01 90.9% 45.0%
3ch0A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.52 44.0 3.02e-01 98.5% 60.7%
1o1zA00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.52 40.0 2.91e-01 89.4% 43.8%
1m5q101 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 40.0 3.99e-01 90.9% 80.9%
2k57A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.52 37.0 4.04e-01 90.9% 92.7%
1b34B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 3.73e-01 90.9% 73.0%
2ra2B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 4.01e-01 92.4% 89.7%
4c92A00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.51 41.0 3.32e-01 89.4% 48.5%
1vd6A00 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.51 43.0 3.08e-01 98.5% 55.0%
7ympE01 3.20.20.190 Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Phosphatidylinositol (PI) phosphodiesterase 0.50 42.0 2.89e-01 98.5% 60.2%
ECOD (12)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4498296 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.54 42.0 3.00e-01 90.9% 47.2%
3223347 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.53 46.0 3.04e-01 98.5% 44.8%
4990366 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.53 45.0 3.17e-01 98.5% 53.5%
4987003 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.53 42.0 4.24e-01 90.9% 86.2%
3977126 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.52 38.0 4.18e-01 92.4% 94.5%
3968342 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.52 38.0 4.20e-01 92.4% 98.1%
25624 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.51 38.0 4.20e-01 90.9% 98.1%
3979842 4.1.1.45 beta barrels › SH3 › SH3 › SH3 › DUF903 0.51 38.0 4.17e-01 92.4% 94.5%
5009583 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.51 43.0 3.09e-01 98.5% 55.6%
2632533 4.1.1.19 beta barrels › SH3 › SH3 › SH3 › LSM 0.51 41.0 4.07e-01 89.4% 88.4%
5014012 2002.1.1.106 a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › GDPD 0.50 41.0 2.96e-01 97.0% 52.4%
4013632 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.50 40.0 3.86e-01 89.4% 75.6%