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MW460249.1__QRE00627.1__X__00051

Bact-Vir

MW460249.1__QRE00627.1__X__00051

Identity

Accession:
MW460249 ↗
Kingdom:
phage

Quality

89.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Ittyvirus› Pseudomonas_phage_Itty13

TaxID: 2805750

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 6-54
PDB
Domain cluster: representative
CATH (42)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5y6iA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.81 56.0 3.83e-01 95.9% 22.4%
2xrnA02 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.79 57.0 3.86e-01 100.0% 21.5%
1mkmA03 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.75 55.0 3.71e-01 100.0% 22.1%
3bjnA00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.74 57.0 3.90e-01 100.0% 25.3%
1tf1B00 3.30.450.40 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › GAF domain 0.72 52.0 3.51e-01 100.0% 21.3%
2iruA02 3.30.70.3300 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.71 59.0 4.32e-01 98.0% 81.2%
5ja1B00 3.90.820.10 Alpha Beta › Alpha-Beta Complex › Rubredoxin-like › Structural Genomics, Unknown Function 30-nov-00 1gh9 Mol_id 0.68 46.0 4.26e-01 73.5% 56.1%
4xmqA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.66 49.0 3.59e-01 77.6% 77.4%
1yj7B01 3.30.70.1530 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Hypothetical protein rpa1041 0.65 43.0 3.85e-01 71.4% 47.9%
1vbkA01 3.30.70.1510 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › THUMP domain-like 0.63 49.0 4.11e-01 85.7% 79.5%
1et9A01 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.63 43.0 3.39e-01 73.5% 70.9%
2l72A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.63 52.0 4.06e-01 100.0% 50.0%
2x5cA01 3.30.70.3590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.63 43.0 3.44e-01 71.4% 75.8%
1ywlA00 3.40.1440.10 Alpha Beta › 3-Layer(aba) Sandwich › GIY-YIG endonuclease › GIY-YIG endonuclease 0.61 42.0 3.33e-01 85.7% 35.4%
3bh1A03 3.40.140.40 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Domain of unknown function (DUF1846), C-terminal subdomain 0.61 49.0 3.69e-01 100.0% 82.9%
1dyoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.61 43.0 3.07e-01 77.6% 85.3%
1xeeA01 3.10.20.390 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Chemotaxis-inhibiting protein CHIPS 0.60 43.0 3.69e-01 77.6% 87.8%
3duzA03 6.10.250.3010 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.60 38.0 3.29e-01 100.0% 41.6%
4xuoA00 2.60.120.260 Mainly Beta › Sandwich › Jelly Rolls › Galactose-binding domain-like 0.59 48.0 3.41e-01 91.8% 69.9%
3vx8A01 3.40.140.100 Alpha Beta › 3-Layer(aba) Sandwich › Cytidine Deaminase; domain 2 › Ubiquitin-like modifier-activating enzyme ATG7 C-terminal domain 0.59 47.0 3.59e-01 100.0% 39.0%
1hqz800 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.59 46.0 3.62e-01 100.0% 45.5%
3w1yB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.58 45.0 3.82e-01 98.0% 88.5%
1vw3C01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.58 43.0 3.23e-01 81.6% 71.0%
2abjD02 3.20.10.10 Alpha Beta › Alpha-Beta Barrel › D-amino Acid Aminotransferase; Chain A, domain 2 › D-amino Acid Aminotransferase, subunit A, domain 2 0.58 40.0 2.84e-01 100.0% 21.1%
2pnqA00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.57 46.0 2.81e-01 100.0% 24.6%
4jgpA01 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.57 42.0 3.40e-01 79.6% 91.3%
4ewfA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 45.0 2.86e-01 89.8% 60.1%
2mv2A00 3.40.20.10 Alpha Beta › 3-Layer(aba) Sandwich › Severin › Severin 0.55 41.0 2.98e-01 91.8% 27.7%
4uzgA01 2.60.40.740 Mainly Beta › Sandwich › Immunoglobulin-like › 0.55 38.0 2.75e-01 75.5% 92.9%
6hj2A00 1.10.565.10 Mainly Alpha › Orthogonal Bundle › Retinoid X Receptor › Retinoid X Receptor 0.55 44.0 2.84e-01 95.9% 65.3%
3rj2X00 2.60.120.1150 Mainly Beta › Sandwich › Jelly Rolls › 0.54 40.0 3.07e-01 87.8% 94.7%
4b6wA00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.53 37.0 3.18e-01 75.5% 95.3%
7ylrA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.53 39.0 3.16e-01 83.7% 96.2%
2a2jA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.53 43.0 2.86e-01 91.8% 86.2%
6vtmB00 3.10.20.120 Alpha Beta › Roll › Ubiquitin-like (UB roll) › 0.52 44.0 3.59e-01 95.9% 71.9%
4chkB00 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 36.0 3.07e-01 75.5% 46.2%
1wgyA01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.52 37.0 3.26e-01 75.5% 76.3%
1cfbA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 36.0 2.95e-01 77.6% 70.8%
6b9tF01 2.60.120.10 Mainly Beta › Sandwich › Jelly Rolls › Jelly Rolls 0.51 42.0 3.21e-01 95.9% 44.8%
2c60A01 3.10.20.90 Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 0.51 34.0 3.04e-01 95.9% 43.0%
1ca1A02 2.60.60.20 Mainly Beta › Sandwich › Lipoxygenase-1 › PLAT/LH2 domain 0.51 36.0 2.78e-01 75.5% 89.2%
1t9mA00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.51 41.0 2.76e-01 91.8% 84.8%
ECOD (52)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4400545 3433.1.2.1 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.70 51.0 5.01e-01 77.6% 71.7%
3387810 223.1.1.51 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › MCP-like_PDC_1 0.70 51.0 3.26e-01 77.6% 42.0%
3989790 3433.1.2.1 ↗ a+b duplicates or obligate multimers › ParB dimerization domain › ParB dimerization domain › Chromosome-encoded ParB dimerization domain › ParB_dimer 0.69 51.0 5.08e-01 77.6% 76.0%
4026519 3871.1.1.1 ↗ alpha duplicates or obligate multimers › PHIST › PHIST › PHIST › PRESAN 0.67 48.0 3.49e-01 75.5% 71.9%
4199672 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.66 55.0 4.53e-01 100.0% 50.5%
3738154 3351.1.1.1 ↗ a/b three-layered sandwiches › Atg7 N-terminal domain-like › N-terminal domain in E1 enzyme Atg7 › N-terminal domain in E1 enzyme Atg7 › ATG7_N 0.66 54.0 4.18e-01 100.0% 44.0%
5010296 2492.1.1.0 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like 0.66 54.0 3.85e-01 100.0% 33.5%
3715885 109.3.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › Ankyrin repeat › Ankyrin repeat 0.64 52.0 3.93e-01 100.0% 64.3%
4120506 243.11.1.4 ↗ a+b two layers › Cystatin-like › NP_346341.1 protein › NP_346341.1 protein › PF29632 0.63 50.0 4.46e-01 98.0% 96.2%
4180400 2492.1.1.25 ↗ a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › DUF1846_C 0.60 48.0 3.57e-01 100.0% 78.7%
3394297 198.1.1.4 ↗ alpha arrays › Saposin-like › Saposin-like › Saposin-like › DUF3456 0.60 50.0 3.77e-01 100.0% 64.4%
3339169 4.1.1.415 ↗ beta barrels › SH3 › SH3 › SH3 › PNPOx_N 0.60 40.0 3.54e-01 73.5% 89.4%
3763290 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.58 43.0 3.28e-01 81.6% 63.1%
5046680 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.58 40.0 3.28e-01 73.5% 81.1%
5080178 11.1.1.103 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CARDB 0.58 40.0 3.05e-01 75.5% 81.6%
4335507 221.1.5.1 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Chemotaxis inhibitory protein CHIPS › CHIPS 0.57 44.0 3.51e-01 85.7% 78.1%
3789874 223.1.1.0 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains 0.57 42.0 2.85e-01 79.6% 73.9%
5044524 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.57 41.0 3.24e-01 77.6% 75.2%
3280641 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.57 41.0 3.42e-01 83.7% 93.0%
3719304 227.1.1.0 ↗ a+b two layers › DNA clamp › DNA clamp › DNA clamp 0.56 46.0 3.50e-01 100.0% 53.0%
3847628 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 39.0 3.33e-01 81.6% 70.5%
3487188 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.55 38.0 3.23e-01 73.5% 81.2%
3402184 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.55 39.0 3.08e-01 77.6% 50.0%
4950723 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.54 42.0 3.31e-01 85.7% 61.9%
4335962 223.1.1.95 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › NtrY_N 0.54 46.0 3.49e-01 100.0% 82.3%
3592612 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 37.0 3.21e-01 71.4% 47.5%
3212416 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.54 38.0 3.25e-01 77.6% 73.3%
4658938 4.1.1.96 ↗ beta barrels › SH3 › SH3 › SH3 › Hfq 0.54 42.0 3.52e-01 89.8% 61.1%
4120485 377.1.1.0 ↗ few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like 0.53 46.0 2.73e-01 95.9% 59.7%
3523119 188.1.1.1 ↗ alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Hormone_recep 0.53 46.0 2.84e-01 95.9% 77.7%
4018229 1207.1.1.1 ↗ a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR_C 0.53 41.0 2.55e-01 85.7% 20.7%
3290160 4.1.1.323 ↗ beta barrels › SH3 › SH3 › SH3 › WYL 0.53 45.0 3.87e-01 95.9% 77.5%
3519122 4.31.1.1 ↗ beta barrels › SH3 › Central WYL domain of RspWYL1 › Central WYL domain of RspWYL1 › WYL 0.53 43.0 3.66e-01 95.9% 75.6%
3235066 11.10.1.6 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › TRAF domain-like › TRAF domain-like › MATH 0.53 36.0 2.76e-01 75.5% 81.5%
3788358 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.53 40.0 3.22e-01 83.7% 70.0%
3226828 10.4.1.0 ↗ beta sandwiches › jelly-roll › Spermadhesin, CUB domain › Spermadhesin, CUB domain 0.53 35.0 2.73e-01 71.4% 43.2%
5051722 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 3.06e-01 77.6% 81.0%
5038652 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 37.0 2.99e-01 77.6% 71.4%
4946760 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 37.0 2.96e-01 77.6% 70.9%
4034510 223.1.1.100 ↗ a+b three layers › Profilin-like › sensor domains › sensor domains › PF29910 0.52 45.0 3.39e-01 98.0% 88.0%
3595506 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 31.0 2.36e-01 87.8% 25.0%
3684143 1207.1.1.1 ↗ a+b two layers › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR SAM-binding regulatory domain › MTHFR_C 0.52 42.0 2.71e-01 93.9% 70.7%
3528111 10.21.1.0 ↗ beta sandwiches › jelly-roll › Jelly-roll domain in ADAMTS13 › Jelly-roll domain in ADAMTS13 0.52 37.0 2.79e-01 75.5% 56.8%
5040182 10.1.2.0 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › GOLD domain-like (DEPRECATED) 0.52 36.0 2.84e-01 75.5% 53.6%
4983428 210.1.3.5 ↗ a+b four layers › Ntn/PP2C › Ntn › Class II glutamine amidotransferases › GATase_7 0.52 38.0 2.63e-01 83.7% 53.8%
3496578 11.1.1.884 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › Metallopep 0.51 35.0 3.08e-01 75.5% 81.2%
3505430 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.51 37.0 2.95e-01 87.8% 83.1%
3253012 11.1.4.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Prealbumin-like 0.51 35.0 2.91e-01 75.5% 59.0%
4954960 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.51 36.0 2.93e-01 81.6% 56.4%
3819239 221.1.1.13 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › AUX_IAA 0.51 37.0 3.11e-01 83.7% 73.7%
3373620 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 37.0 3.05e-01 77.6% 71.1%
3997436 221.1.1.0 ↗ a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like 0.50 37.0 2.95e-01 83.7% 66.1%