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MW460249.1__QRE00632.1__X__00056
Bact-VirMW460249.1__QRE00632.1__X__00056
Identity
- Accession:
- MW460249 ↗
- Kingdom:
- phage
Quality
76.9
mean pLDDT
Taxonomy
TaxID: 2805750
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-72
Domain cluster:
representative
CATH (33)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2khmA01 | 1.10.10.1350 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Spidroin domain, C-terminal domain | 0.73 | 64.0 | 5.51e-01 | 98.5% | 66.7% |
| 3h36A00 | 1.10.10.400 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Polyribonucleotide nucleotidyltransferase, RNA-binding domain | 0.70 | 60.0 | 5.79e-01 | 97.1% | 89.7% |
| 3pvlA03 | 1.20.80.10 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.69 | 52.0 | 4.44e-01 | 89.7% | 48.3% |
| 6i2mB02 | 1.20.1310.10 | Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats | 0.69 | 57.0 | 4.75e-01 | 92.6% | 54.1% |
| 3vw4A01 | 1.10.340.50 | Mainly Alpha › Orthogonal Bundle › Endonuclease III; domain 1 › | 0.69 | 57.0 | 5.21e-01 | 94.1% | 69.6% |
| 3n4eA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.66 | 56.0 | 4.98e-01 | 100.0% | 81.7% |
| 2klqA00 | 1.20.58.870 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.65 | 56.0 | 4.81e-01 | 100.0% | 88.6% |
| 3ugvA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.65 | 56.0 | 4.64e-01 | 100.0% | 78.6% |
| 2wy4A00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.64 | 55.0 | 4.44e-01 | 98.5% | 89.9% |
| 1j8yF01 | 1.20.120.140 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › SRP54, nucleotide-binding domain | 0.64 | 44.0 | 4.11e-01 | 72.1% | 65.1% |
| 3cyjA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.63 | 54.0 | 4.52e-01 | 100.0% | 77.9% |
| 3ibyD02 | 1.10.287.1770 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.62 | 47.0 | 4.44e-01 | 82.4% | 84.5% |
| 3hyuA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.62 | 54.0 | 4.35e-01 | 100.0% | 93.6% |
| 2y1eA03 | 1.10.1740.10 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif | 0.62 | 43.0 | 3.96e-01 | 72.1% | 93.1% |
| 2rn7A01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 43.0 | 4.41e-01 | 94.1% | 78.8% |
| 3itfA00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.61 | 46.0 | 4.01e-01 | 83.8% | 80.2% |
| 2yqzA02 | 1.10.8.900 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.60 | 41.0 | 4.16e-01 | 70.6% | 100.0% |
| 5ojcA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.60 | 51.0 | 4.03e-01 | 98.5% | 89.6% |
| 3toyA01 | 3.30.390.10 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › Enolase-like, N-terminal domain | 0.60 | 50.0 | 4.23e-01 | 100.0% | 78.0% |
| 3o39A00 | 1.20.120.1490 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › | 0.59 | 45.0 | 4.08e-01 | 83.8% | 92.7% |
| 2nrlA00 | 1.10.490.10 | Mainly Alpha › Orthogonal Bundle › Globin-like › Globins | 0.59 | 48.0 | 3.89e-01 | 94.1% | 93.1% |
| 2x3mA00 | 1.25.40.670 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.59 | 50.0 | 3.87e-01 | 100.0% | 41.0% |
| 3au4A01 | 1.25.40.530 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › MyTH4 domain | 0.58 | 45.0 | 3.28e-01 | 89.7% | 29.6% |
| 1u00A02 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.56 | 41.0 | 3.63e-01 | 88.2% | 54.2% |
| 1aj3A00 | 1.20.58.60 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.56 | 42.0 | 3.85e-01 | 85.3% | 86.7% |
| 2oyyA00 | 6.10.80.10 | Special › Helix non-globular › DNA polymerase; domain 1 › Hexameric tyrosine-coordinated heme protein (HTHP) | 0.55 | 39.0 | 3.92e-01 | 76.5% | 94.4% |
| 1v9vA01 | 1.20.1480.20 | Mainly Alpha › Up-down Bundle › hypothetical protein mp506/mpn330, domain 1 › MAST3 pre-PK domain-like | 0.55 | 46.0 | 4.22e-01 | 100.0% | 84.2% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.55 | 46.0 | 4.38e-01 | 97.1% | 86.9% |
| 3u3iA02 | 1.20.58.1110 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.54 | 42.0 | 3.70e-01 | 88.2% | 62.0% |
| 1d9cA00 | 1.20.1250.10 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › | 0.53 | 45.0 | 3.79e-01 | 97.1% | 66.1% |
| 3ddhA02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.52 | 43.0 | 4.12e-01 | 97.1% | 92.6% |
| 6he1B01 | 1.10.287.40 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › Serine-tRNA synthetase, tRNA binding domain | 0.52 | 38.0 | 3.93e-01 | 86.8% | 82.8% |
| 2psmA00 | 1.20.1250.70 | Mainly Alpha › Up-down Bundle › Growth Hormone; Chain: A; › Interleukin-15/Interleukin-21 | 0.51 | 43.0 | 3.69e-01 | 97.1% | 89.7% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3966541 | 3827.1.1.0 ↗ | alpha duplicates or obligate multimers › Hypothetical protein PA0856 › Hypothetical protein PA0856 › Hypothetical protein PA0856 | 0.74 | 51.0 | 3.88e-01 | 70.6% | 33.1% |
| 184733 | 3640.1.1.1 ↗ | alpha duplicates or obligate multimers › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Minor ampullate fibroin 1 C-terminal domain › Spidroin_MaSp | 0.73 | 64.0 | 5.06e-01 | 98.5% | 51.4% |
| 3587199 | 101.39.1.1 ↗ | alpha arrays › HTH › Replication protein RepB C-terminal domain › Replication protein RepB C-terminal domain › RepB_C | 0.68 | 50.0 | 5.26e-01 | 89.7% | 90.0% |
| 3617759 | 529.1.1.2 ↗ | few secondary structure elements › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › Anaphylotoxins (complement system) › BSMAP | 0.68 | 55.0 | 5.51e-01 | 100.0% | 90.0% |
| 3176026 | 610.2.1.0 ↗ | alpha arrays › ERP29 C domain-like › Helical domain of Sec23/24 › Helical domain of Sec23/24 | 0.68 | 54.0 | 4.58e-01 | 88.2% | 56.5% |
| 3752445 | 102.1.1.143 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › XTBD | 0.68 | 45.0 | 4.55e-01 | 72.1% | 69.1% |
| 145398 | 218.1.1.1 ↗ | a+b two layers › Enolase-N/ribosomal protein › Enolase N-terminal domain-like › Enolase N-terminal domain-like › MR_MLE_N | 0.65 | 56.0 | 4.60e-01 | 100.0% | 76.2% |
| 4883304 | 185.1.1.1 ↗ | alpha superhelices › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin/Protein HNS-dependent expression A HdeA › Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin › Tryp_alpha_amyl | 0.63 | 47.0 | 4.60e-01 | 91.2% | 75.7% |
| 168067 | 2.1.1.95 ↗ | beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Lig_C | 0.62 | 42.0 | 3.32e-01 | 70.6% | 34.3% |
| 4215156 | 1197.1.1.1 ↗ | alpha bundles › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › Integral membrane glycerol 3-phosphate acyltransferase PlsY › G3P_acyltransf | 0.61 | 49.0 | 3.66e-01 | 92.6% | 39.5% |
| 3592778 | 101.1.10.0 ↗ | alpha arrays › HTH › HTH › Cyclin-like | 0.60 | 49.0 | 4.60e-01 | 95.6% | 71.8% |
| 55657 | 162.1.1.0 ↗ | alpha bundles › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD › PTS-regulatory domain, PRD | 0.57 | 46.0 | 4.25e-01 | 89.7% | 96.7% |
| 5012848 | 3457.1.1.1 ↗ | alpha bundles › GxGD membrane protease › GxGD membrane protease › GxGD membrane protease › Peptidase_A24 | 0.56 | 43.0 | 3.37e-01 | 86.8% | 82.4% |
| 4181278 | 632.7.1.1 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Heat shock protein 70kD (HSP70), C-terminal subdomain › Heat shock protein 70kD (HSP70), C-terminal subdomain › HSP70 | 0.55 | 40.0 | 3.93e-01 | 82.4% | 70.7% |
| 3929347 | 7579.1.1.70 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › DUF1057 | 0.53 | 46.0 | 3.02e-01 | 100.0% | 35.9% |
| 3947647 | 159.1.2.3 ↗ | alpha bundles › all-alpha NTP pyrophosphatases › all-alpha NTP pyrophosphatases › MazG-related › dATP-dGTP_PPHyd | 0.50 | 37.0 | 3.39e-01 | 79.4% | 72.6% |
D2
high
residues 103-192
Domain cluster:
rep: NC_027299.1__YP_009146220.1__SUFP_046__00046__D4-101
Pfam (2)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10544.16 best | T5orf172 | 61.4 | 1.30e-16 | 98.9% | 99.0% |
| PF13455.13 | MUG113 | 55.2 | 1.20e-14 | 82.2% | 98.6% |