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MW464860.1__QSL98957.1__X__00048

Bact-Vir

MW464860.1__QSL98957.1__X__00048

Identity

Accession:
MW464860 ↗
Kingdom:
phage

Quality

79.4 mean pLDDT

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 26-122
PDB
CATH (27)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3qzqA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.75 46.0 5.39e-01 100.0% 87.0%
2eqnA01 2.40.10.230 Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain 0.64 42.0 4.40e-01 96.9% 74.7%
3p26B02 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.64 49.0 4.89e-01 97.9% 78.2%
2p5zX01 2.30.110.50 Mainly Beta › Roll › Pnp Oxidase; Chain A › 0.62 49.0 4.07e-01 100.0% 48.8%
3d37B01 2.30.300.10 Mainly Beta › Roll › Phage tail proteins - horseshoe like beta roll fold › Baseplate protein-like domain - beta roll fold 0.62 48.0 3.94e-01 82.5% 49.4%
1k28D03 2.40.30.150 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Bacteriophage T4, Gp27, baseplate hub, domain 3 0.58 49.0 4.99e-01 96.9% 92.6%
4ci2B02 2.30.130.40 Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › LON domain-like 0.57 43.0 4.00e-01 81.4% 67.2%
2wzpP01 2.40.30.210 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.55 50.0 4.86e-01 100.0% 90.8%
1blxA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.55 39.0 4.02e-01 74.2% 84.8%
2kcaA00 2.40.10.270 Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein 0.55 47.0 4.54e-01 100.0% 85.3%
2ausC02 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.55 37.0 2.98e-01 92.8% 34.9%
1k8wA01 3.30.2350.10 Alpha Beta › 2-Layer Sandwich › Pseudouridine synthase › Pseudouridine synthase 0.55 45.0 3.40e-01 90.7% 40.2%
2ptfA01 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.54 49.0 4.28e-01 100.0% 74.1%
2pziB02 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.37e-01 74.2% 51.0%
4w64B00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.54 48.0 4.10e-01 100.0% 76.2%
4qnyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 38.0 3.60e-01 74.2% 63.9%
2bc4A02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.53 35.0 3.41e-01 73.2% 59.6%
3eaaA00 2.30.110.20 Mainly Beta › Roll › Pnp Oxidase; Chain A › Hcp1-like 0.53 47.0 4.00e-01 100.0% 75.3%
3pg1A01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.52 37.0 3.39e-01 74.2% 62.8%
3mcaA01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.52 47.0 4.38e-01 97.9% 80.5%
2apoA03 3.30.70.3190 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.51 34.0 3.50e-01 92.8% 70.7%
4paaA03 3.30.1360.120 Alpha Beta › 2-Layer Sandwich › Gyrase A; domain 2 › Probable tRNA modification gtpase trme; domain 1 0.51 35.0 2.86e-01 72.2% 38.1%
3of6E00 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 35.0 3.43e-01 73.2% 66.3%
7zqiA02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.51 32.0 3.39e-01 72.2% 72.1%
3e3pA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.50 35.0 3.76e-01 71.1% 88.5%
2rc5B01 2.40.30.10 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Translation factors 0.50 44.0 3.92e-01 97.9% 83.6%
3q0bX00 2.30.280.10 Mainly Beta › Roll › PUA domain-like › SRA-YDG 0.50 45.0 3.90e-01 100.0% 70.9%
ECOD (59)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4064793 1.1.7.11 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › RimM 0.72 45.0 4.47e-01 78.4% 61.0%
5022644 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.71 48.0 4.84e-01 77.3% 70.5%
4030357 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.69 46.0 4.75e-01 77.3% 72.2%
4982501 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.68 43.0 4.38e-01 75.3% 65.3%
3502344 1.1.7.19 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › GTP_EFTU_D2 0.67 48.0 4.89e-01 77.3% 75.8%
3981227 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.65 47.0 5.23e-01 100.0% 96.0%
3789214 1.1.7.25 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › AARP2CN 0.64 48.0 4.73e-01 99.0% 73.3%
4003172 1.1.5.1 beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin 0.64 53.0 4.19e-01 100.0% 44.6%
5062396 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.63 47.0 4.16e-01 78.4% 96.4%
5038876 1.1.13.2 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_attach 0.63 51.0 5.26e-01 100.0% 93.3%
4352697 1.1.7.50 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › EF-G_D2 0.63 46.0 4.68e-01 77.3% 77.9%
4888819 1.1.13.10 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage-tail_1 0.63 57.0 5.46e-01 100.0% 85.6%
3968713 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.62 49.0 5.15e-01 100.0% 91.1%
5081164 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.62 44.0 4.25e-01 74.2% 66.4%
3970827 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.62 49.0 5.22e-01 100.0% 96.5%
4969149 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 4.19e-01 74.2% 68.7%
4969147 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.61 42.0 4.20e-01 75.3% 69.0%
3533150 11.1.1.1108 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CATSPERB_head 0.61 46.0 4.65e-01 79.4% 81.1%
4072524 1.1.7.88 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › PF25963 0.60 44.0 4.20e-01 95.9% 66.4%
3221126 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.60 49.0 4.58e-01 97.9% 70.8%
4957568 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 48.0 5.07e-01 97.9% 97.6%
5002753 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.59 45.0 4.84e-01 99.0% 92.9%
3840640 11.1.1.363 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › C2-set_3 0.59 37.0 3.35e-01 73.2% 45.9%
3244545 304.109.1.1 a+b two layers › Alpha-beta plaits › Ribosomal proteins S24e, L23 and L15e › Ribosomal proteins S24e, L23 and L15e › Ribosomal_L23 0.59 51.0 4.37e-01 95.9% 65.6%
4247994 1.1.13.5 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_GPD 0.58 53.0 5.26e-01 100.0% 95.0%
4025731 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.58 36.0 2.93e-01 93.8% 30.3%
4260208 1.1.13.62 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › PF27197 0.58 50.0 4.97e-01 99.0% 100.0%
4032883 1.1.13.3 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_H_T_join 0.57 50.0 4.90e-01 100.0% 90.5%
3317802 304.8.1.45 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like › bHLH-TF_ACT-like_plant 0.57 36.0 3.71e-01 74.2% 65.3%
3426902 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.57 35.0 3.60e-01 72.2% 63.2%
3967003 1.1.13.35 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_TTP_11 0.56 51.0 4.49e-01 100.0% 86.4%
3823591 304.8.1.0 a+b two layers › Alpha-beta plaits › ACT-like › ACT-like 0.56 37.0 3.68e-01 73.2% 65.0%
4929587 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.56 46.0 4.77e-01 100.0% 96.7%
3807657 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.55 46.0 3.43e-01 91.8% 36.8%
3511358 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 50.0 5.03e-01 99.0% 96.0%
4888726 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.55 49.0 4.14e-01 100.0% 75.6%
3944430 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.55 48.0 4.74e-01 97.9% 87.6%
4932565 305.1.1.1 a+b two layers › DCoH-like › RBP11-like subunits of RNA polymerase › RBP11-like subunits of RNA polymerase › RNA_pol_L 0.55 37.0 3.91e-01 74.2% 75.6%
3678951 304.102.1.4 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N 0.55 45.0 3.50e-01 92.8% 39.6%
5036917 304.102.1.13 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_C_2 0.55 40.0 3.49e-01 92.8% 50.0%
4059301 1.1.13.47 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Dit_like 0.54 49.0 4.77e-01 100.0% 93.6%
2595159 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.54 48.0 4.07e-01 100.0% 74.7%
3855829 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.54 36.0 3.29e-01 73.2% 51.6%
3465961 304.102.1.6 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › TruB_N,TruB_C_2 0.54 40.0 3.15e-01 92.8% 35.8%
3943689 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 48.0 4.66e-01 97.9% 86.4%
3924220 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.53 37.0 3.63e-01 75.3% 65.7%
5002750 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.53 47.0 4.65e-01 100.0% 94.3%
3276309 319.1.1.5 beta sandwiches › HSP20-like › HSP20-like chaperones › HSP20-like chaperones › PIH1_CS 0.52 39.0 3.70e-01 78.4% 82.5%
3844943 11.1.1.117 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › EpoR_lig-bind 0.52 35.0 3.59e-01 75.3% 70.5%
5082881 1.1.13.0 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins 0.52 47.0 4.31e-01 100.0% 91.2%
3261290 11.1.1.843 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › DUF7034 0.52 37.0 3.46e-01 75.3% 60.0%
2642579 1.1.13.6 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Phage_tail_2 0.51 46.0 4.19e-01 100.0% 86.9%
4291497 11.1.1.3 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › ig 0.51 35.0 3.52e-01 73.2% 69.0%
4957562 1.1.13.76 beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › DUF6046 0.51 45.0 4.39e-01 100.0% 91.8%
4938551 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.51 42.0 4.38e-01 100.0% 97.8%
3835994 304.102.1.1 a+b two layers › Alpha-beta plaits › Pseudouridine synthase › Pseudouridine synthase › PseudoU_synth_2 0.51 40.0 3.25e-01 91.8% 44.2%
3550747 11.1.1.189 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › PTCRA 0.51 35.0 3.47e-01 74.2% 66.7%
3836146 1.1.9.4 beta barrels › cradle loop barrel › RIFT-related › PUA domain › SAD_SRA 0.50 45.0 3.95e-01 100.0% 82.1%
4964155 1.1.9.31 beta barrels › cradle loop barrel › RIFT-related › PUA domain › SRA_ScoMcrA 0.50 44.0 3.98e-01 100.0% 73.6%