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MW476489.1__QRD99521.1__X__00022

Bact-Vir

MW476489.1__QRD99521.1__X__00022

Identity

Accession:
MW476489 ↗
Kingdom:
phage

Quality

88.3 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 9-109
PDB
Domain cluster: representative
D2 high residues 111-174
PDB
CATH (52)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2p84A02 2.30.30.290 Mainly Beta › Roll › SH3 type barrels. › YopX-like domains 0.84 61.0 5.83e-01 100.0% 67.1%
1sf9A02 2.30.30.340 Mainly Beta › Roll › SH3 type barrels. › Hypothetical protein YfhH like domains 0.68 49.0 5.25e-01 100.0% 90.7%
4ytlA01 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.66 48.0 5.35e-01 98.4% 100.0%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.65 52.0 5.45e-01 100.0% 96.5%
4c5eC02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.64 50.0 4.42e-01 100.0% 57.3%
5ycqA00 2.30.30.390 Mainly Beta › Roll › SH3 type barrels. › Hemimethylated DNA-binding domain 0.63 49.0 4.64e-01 100.0% 70.1%
3feoB02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.63 50.0 4.60e-01 100.0% 67.5%
1sjgA00 2.102.10.10 Mainly Beta › 3-layer Sandwich › Rieske Iron-sulfur Protein › Rieske [2Fe-2S] iron-sulphur domain 0.63 51.0 4.34e-01 93.8% 85.7%
3udcA02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.63 44.0 4.85e-01 100.0% 96.0%
2wssA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.62 43.0 3.76e-01 100.0% 49.5%
2e6zA00 2.30.30.30 Mainly Beta › Roll › SH3 type barrels. › 0.62 47.0 4.89e-01 100.0% 89.8%
6rtqA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 54.0 4.30e-01 100.0% 91.7%
4ggtB00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 53.0 4.54e-01 98.4% 99.1%
5ajiB02 2.30.30.60 Mainly Beta › Roll › SH3 type barrels. › 0.61 45.0 4.86e-01 100.0% 100.0%
3e1sA04 2.30.30.940 Mainly Beta › Roll › SH3 type barrels. › 0.61 50.0 4.95e-01 100.0% 82.6%
6oqrA01 2.40.30.20 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › 0.61 42.0 3.72e-01 100.0% 51.1%
4bj8K00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.61 53.0 4.38e-01 100.0% 97.5%
3zfnA02 2.30.140.40 Mainly Beta › Roll › Spermidine Synthase; Chain: A, domain 2 › Pestivirus Npro endopeptidase C53, interaction domain 0.60 38.0 3.94e-01 84.4% 70.2%
6bogA02 2.30.30.930 Mainly Beta › Roll › SH3 type barrels. › 0.59 45.0 4.69e-01 98.4% 88.3%
2fjrA02 2.10.109.10 Mainly Beta › Ribbon › Umud Fragment, subunit A › Umud Fragment, subunit A 0.59 42.0 3.55e-01 100.0% 43.4%
2kvtA00 3.30.730.30 Alpha Beta › 2-Layer Sandwich › GCC-box Binding Domain › YaiA protein 0.59 43.0 4.16e-01 78.1% 71.8%
2p4oA01 2.120.10.30 Mainly Beta › 6 Propeller › Neuraminidase › TolB, C-terminal domain 0.58 49.0 3.25e-01 96.9% 92.5%
1vq8Q00 2.30.30.70 Mainly Beta › Roll › SH3 type barrels. › Ribosomal protein L21 0.58 51.0 4.49e-01 100.0% 66.3%
1jlxA02 2.80.10.50 Mainly Beta › Trefoil › Trefoil (Acidic Fibroblast Growth Factor, subunit A) › 0.57 47.0 3.83e-01 98.4% 100.0%
1nqnA00 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.57 49.0 4.11e-01 100.0% 98.3%
2gc9B00 2.40.128.20 Mainly Beta › Beta Barrel › Lipocalin › Calycin beta-barrel core domain 0.57 49.0 3.77e-01 100.0% 83.9%
5b4wA00 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.57 46.0 2.83e-01 92.2% 96.5%
3fb9B00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.57 50.0 4.58e-01 100.0% 77.4%
2sfaA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 48.0 4.30e-01 95.3% 82.4%
3be3A00 2.30.30.320 Mainly Beta › Roll › SH3 type barrels. › DUF1653-like domain 0.56 50.0 4.77e-01 100.0% 90.8%
3a2yA00 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.56 47.0 3.53e-01 100.0% 43.2%
2zxdA02 2.60.40.1180 Mainly Beta › Sandwich › Immunoglobulin-like › Golgi alpha-mannosidase II 0.56 40.0 3.56e-01 75.0% 95.6%
1ei5A02 2.40.128.50 Mainly Beta › Beta Barrel › Lipocalin › 0.56 47.0 4.40e-01 98.4% 91.5%
2bf6A02 2.40.220.10 Mainly Beta › Beta Barrel › Intramolecular trans-sialidase; domain 3 › Intramolecular Trans-sialidase; Domain 3 0.56 48.0 4.79e-01 98.4% 98.5%
1w0pA03 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.55 47.0 3.47e-01 100.0% 49.7%
7knlA01 2.40.128.30 Mainly Beta › Beta Barrel › Lipocalin › Avidin-like 0.55 45.0 3.81e-01 93.8% 82.5%
2vobB02 3.90.1720.10 Alpha Beta › Alpha-Beta Complex › endopeptidase fold (from Nostoc punctiforme) › endopeptidase domain like (from Nostoc punctiforme) 0.55 47.0 3.35e-01 100.0% 37.4%
1d4tA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.55 47.0 4.09e-01 98.4% 92.3%
1b69A00 3.30.160.60 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Classic Zinc Finger 0.54 45.0 4.45e-01 93.8% 84.1%
4zpjA02 3.40.50.2300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator 0.54 39.0 2.94e-01 78.1% 96.5%
2j5uA02 2.40.10.340 Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 1 0.54 40.0 3.72e-01 100.0% 61.9%
2jiiA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 48.0 3.99e-01 98.4% 82.7%
2ktyA01 3.30.200.20 Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 0.54 44.0 3.61e-01 96.9% 74.6%
2v4dE01 2.40.420.20 Mainly Beta › Beta Barrel › conserved putative lor/sdh protein from methanococcus maripaludis s2 fold › 0.54 39.0 3.61e-01 78.1% 92.9%
2cudA00 2.30.30.40 Mainly Beta › Roll › SH3 type barrels. › SH3 Domains 0.54 44.0 4.16e-01 95.3% 73.4%
6asoH00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.53 42.0 3.94e-01 98.4% 69.9%
3isxA02 2.40.30.40 Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Peptidase M42, domain 2 0.52 38.0 3.54e-01 82.8% 94.4%
4ci8A02 2.130.10.10 Mainly Beta › 7 Propeller › Methylamine Dehydrogenase; Chain H › YVTN repeat-like/Quinoprotein amine dehydrogenase 0.51 43.0 2.85e-01 100.0% 88.2%
1jqpA01 2.40.128.80 Mainly Beta › Beta Barrel › Lipocalin › Cathepsin C, exclusion domain 0.51 42.0 3.68e-01 100.0% 100.0%
4b6eB01 2.40.10.120 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.51 43.0 3.12e-01 100.0% 84.7%
3fanA01 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.51 37.0 3.57e-01 78.1% 89.0%
4ii1A02 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 38.0 3.94e-01 100.0% 98.2%
ECOD (78)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4994957 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.76 57.0 6.11e-01 100.0% 92.7%
5013892 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.72 55.0 5.97e-01 100.0% 94.5%
4995678 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 55.0 5.89e-01 96.9% 94.5%
4950396 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.35e-01 100.0% 85.5%
3862126 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.71 49.0 5.07e-01 100.0% 76.7%
3302818 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.71 52.0 5.53e-01 100.0% 90.9%
3486330 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.71 50.0 5.49e-01 100.0% 94.0%
3781711 4.1.1.236 beta barrels › SH3 › SH3 › SH3 › KOWx_SPT5 0.71 50.0 5.29e-01 100.0% 85.5%
3839849 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.70 49.0 4.93e-01 100.0% 72.3%
4662947 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.70 48.0 4.82e-01 100.0% 70.8%
5033075 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.69 50.0 5.32e-01 100.0% 89.1%
4611708 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.69 47.0 4.91e-01 100.0% 76.7%
3590122 4999.1.1.1 beta barrels › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX, C-terminal domain-like › YopX 0.69 53.0 5.35e-01 95.3% 81.5%
4325815 109.4.1.0 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.69 50.0 2.88e-01 100.0% 8.0%
5036616 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.69 51.0 4.99e-01 100.0% 72.9%
4347999 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.68 48.0 4.78e-01 100.0% 72.3%
4975150 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.68 52.0 5.33e-01 100.0% 86.7%
3278801 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.68 47.0 4.77e-01 100.0% 72.3%
4579331 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 50.0 5.07e-01 100.0% 79.4%
4165723 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.67 48.0 4.79e-01 100.0% 73.8%
4967397 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 51.0 5.09e-01 100.0% 80.0%
3964846 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.67 47.0 4.27e-01 98.4% 55.3%
4116921 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.67 47.0 4.82e-01 100.0% 78.3%
4980648 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 51.0 4.96e-01 100.0% 74.3%
4026678 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.67 50.0 4.86e-01 100.0% 72.9%
4997767 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.67 44.0 5.06e-01 92.2% 97.8%
4640515 4.1.1.175 beta barrels › SH3 › SH3 › SH3 › MSSS 0.67 46.0 5.07e-01 100.0% 92.0%
5025079 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 50.0 5.33e-01 100.0% 92.7%
4024913 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.66 47.0 4.70e-01 100.0% 73.8%
4204303 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.66 46.0 4.01e-01 100.0% 51.1%
3989139 4.1.1.297 beta barrels › SH3 › SH3 › SH3 › YajC 0.66 46.0 4.62e-01 100.0% 72.3%
4032729 4.1.1.168 beta barrels › SH3 › SH3 › SH3 › DUF2187 0.66 53.0 5.52e-01 100.0% 94.8%
3598283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 53.0 4.19e-01 100.0% 43.8%
3703934 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 49.0 5.02e-01 96.9% 85.0%
4998148 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.65 47.0 4.96e-01 100.0% 89.1%
4128405 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.65 45.0 4.39e-01 100.0% 65.7%
3963760 4.11.1.1 beta barrels › SH3 › LexA/Signal peptidase › LexA/Signal peptidase › Peptidase_S24 0.64 47.0 3.63e-01 78.1% 93.7%
3199895 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 44.0 3.84e-01 100.0% 48.4%
3634374 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.64 44.0 4.95e-01 100.0% 92.0%
4184958 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.64 44.0 3.98e-01 100.0% 54.1%
4526316 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 44.0 3.80e-01 100.0% 48.4%
3292420 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 44.0 3.87e-01 100.0% 51.1%
4273414 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 44.0 4.27e-01 100.0% 65.7%
5066141 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 46.0 4.58e-01 96.9% 75.4%
4281020 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 44.0 3.78e-01 100.0% 48.4%
2814716 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 43.0 3.77e-01 100.0% 48.4%
4142364 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.63 44.0 4.45e-01 98.4% 73.8%
4854958 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.63 43.0 3.75e-01 100.0% 47.9%
4512995 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 43.0 4.20e-01 100.0% 65.7%
4163711 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 43.0 3.88e-01 100.0% 54.1%
3708283 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.62 54.0 5.00e-01 100.0% 89.4%
4047241 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.62 43.0 3.72e-01 100.0% 48.4%
3973553 1.1.7.0 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C 0.62 43.0 4.17e-01 100.0% 65.7%
3956735 6055.1.1.1 extended segments › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › Preprotein translocase subunit YajC › YajC 0.62 41.0 4.64e-01 95.3% 97.8%
4111597 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 42.0 4.23e-01 100.0% 70.8%
4038642 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 42.0 4.12e-01 100.0% 65.7%
1063578 9.2.1.1 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.61 53.0 4.54e-01 98.4% 99.1%
4087314 1.1.7.17 beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › ATP-synt_ab_N 0.61 42.0 3.88e-01 100.0% 57.5%
5042544 4.1.1.13 beta barrels › SH3 › SH3 › SH3 › MS_channel_2nd 0.60 42.0 4.26e-01 96.9% 73.8%
4152335 9.2.1.1 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin › Avidin 0.60 51.0 4.20e-01 98.4% 91.9%
3886322 5.1.5.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 8-bladed 0.58 46.0 2.90e-01 90.6% 20.3%
3514522 4.1.1.3 beta barrels › SH3 › SH3 › SH3 › KOW 0.57 49.0 4.69e-01 95.3% 90.7%
3709314 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.57 47.0 3.97e-01 96.9% 76.7%
4978138 213.1.1.0 a+b three layers › Nat/Ivy › Acyl-CoA N-acyltransferases (Nat) › Acyl-CoA N-acyltransferases (Nat) 0.57 41.0 3.13e-01 76.6% 72.0%
3649175 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.57 43.0 2.64e-01 100.0% 14.0%
4012945 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 51.0 4.88e-01 100.0% 94.7%
3268160 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 50.0 4.52e-01 100.0% 84.4%
3948255 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.57 50.0 3.99e-01 100.0% 60.8%
3716988 5.1.4.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › CNH 0.56 45.0 2.91e-01 93.8% 95.2%
4380184 9.11.1.1 beta barrels › Lipocalins/Streptavidin › YdhA-like › YdhA-like › MliC 0.55 47.0 4.28e-01 96.9% 100.0%
4193599 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 47.0 4.08e-01 100.0% 65.7%
3473407 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.55 48.0 4.55e-01 98.4% 85.3%
3626487 101.1.2.194 alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH 0.54 40.0 3.39e-01 84.4% 88.8%
3419181 5.1.3.144 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed › b-prop_At3g26010-like 0.54 44.0 2.97e-01 96.9% 83.7%
3712769 101.1.2.194 alpha arrays › HTH › HTH › winged helix domain › RIOX1_C_WH 0.53 40.0 3.40e-01 85.9% 45.8%
3960877 295.1.1.27 a+b two layers › ssDNA-binding transcriptional regulator domain-like › ssDNA-binding transcriptional regulator domain › ssDNA-binding transcriptional regulator domain › PF25991 0.53 41.0 4.07e-01 90.6% 91.4%
5074749 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 41.0 4.01e-01 100.0% 81.4%
5018124 9.2.1.0 beta barrels › Lipocalins/Streptavidin › Avidin/Streptavidin › Avidin/Streptavidin 0.52 44.0 4.11e-01 100.0% 88.2%