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MW476490.1__QRD99578.1__X__00021
Bact-VirMW476490.1__QRD99578.1__X__00021
Identity
- Accession:
- MW476490 ↗
- Kingdom:
- phage
Quality
78.2
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
medium
residues 1-37
Domain cluster:
representative
CATH (29)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1kgqA01 | 1.10.166.10 | Mainly Alpha › Orthogonal Bundle › Tetrahydrodipicolinate-N-succinyltransferase; Chain A, domain 1 › Tetrahydrodipicolinate-N-succinyltransferase, N-terminal domain | 0.76 | 51.0 | 4.05e-01 | 70.3% | 47.1% |
| 2bg1A01 | 3.90.1310.40 | Alpha Beta › Alpha-Beta Complex › Penicillin-binding protein 2a (Domain 2) › | 0.74 | 54.0 | 4.26e-01 | 78.4% | 45.5% |
| 1lnwF01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.74 | 54.0 | 3.70e-01 | 78.4% | 56.5% |
| 5y2vC01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 50.0 | 3.72e-01 | 89.2% | 31.8% |
| 3fxqB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.72 | 50.0 | 3.65e-01 | 94.6% | 30.0% |
| 1yaxB00 | 3.30.450.140 | Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PhoQ sensor domain | 0.71 | 53.0 | 3.60e-01 | 81.1% | 88.8% |
| 7dklA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.70 | 55.0 | 3.85e-01 | 86.5% | 36.0% |
| 8dgfB01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.69 | 47.0 | 2.98e-01 | 70.3% | 90.6% |
| 3r4iA02 | 6.10.140.960 | Special › Helix non-globular › Helix Hairpins › | 0.67 | 46.0 | 4.02e-01 | 73.0% | 45.0% |
| 2x4hA00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.65 | 55.0 | 3.70e-01 | 91.9% | 60.5% |
| 3f5fA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.65 | 52.0 | 3.07e-01 | 89.2% | 46.2% |
| 3hvaA00 | 3.30.70.270 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Reverse transcriptase/Diguanylate cyclase domain | 0.64 | 51.0 | 3.33e-01 | 89.2% | 32.7% |
| 3b73B00 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 46.0 | 3.44e-01 | 78.4% | 47.2% |
| 2qenA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.63 | 47.0 | 3.76e-01 | 78.4% | 50.0% |
| 1biqA00 | 1.10.620.20 | Mainly Alpha › Orthogonal Bundle › Ribonucleotide Reductase, subunit A › Ribonucleotide Reductase, subunit A | 0.62 | 55.0 | 3.15e-01 | 100.0% | 17.4% |
| 2dc0A00 | 3.90.1300.10 | Alpha Beta › Alpha-Beta Complex › Amidase signature (AS) enzymes › Amidase signature (AS) domain | 0.62 | 52.0 | 2.95e-01 | 94.6% | 81.8% |
| 2bgcA02 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 46.0 | 3.43e-01 | 83.8% | 99.0% |
| 3kfwX01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.61 | 44.0 | 3.55e-01 | 78.4% | 49.3% |
| 2ggoA02 | 2.160.10.10 | Mainly Beta › 3 Solenoid › UDP N-Acetylglucosamine Acyltransferase; domain 1 › Hexapeptide repeat proteins | 0.59 | 41.0 | 2.61e-01 | 73.0% | 26.7% |
| 1c0wA01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.59 | 43.0 | 3.45e-01 | 75.7% | 95.9% |
| 2qlzA03 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.58 | 43.0 | 3.63e-01 | 81.1% | 61.9% |
| 2fnaA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.58 | 44.0 | 2.77e-01 | 86.5% | 31.5% |
| 1nj4A01 | 3.40.710.10 | Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily | 0.58 | 41.0 | 2.59e-01 | 81.1% | 74.0% |
| 1xdsB01 | 1.10.10.10 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.57 | 41.0 | 3.32e-01 | 89.2% | 95.7% |
| 2w82A03 | 1.10.10.1190 | Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Antirestriction protein ArdA, domain 3 | 0.56 | 39.0 | 3.28e-01 | 70.3% | 51.6% |
| 4inaA02 | 3.30.360.10 | Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 | 0.55 | 43.0 | 2.72e-01 | 83.8% | 52.3% |
| 1iq8A02 | 3.90.1020.10 | Alpha Beta › Alpha-Beta Complex › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 2 › ArcTGT, C1 domain | 0.54 | 38.0 | 3.22e-01 | 75.7% | 45.7% |
| 3lmmA03 | 3.30.565.60 | Alpha Beta › 2-Layer Sandwich › Heat Shock Protein 90 › | 0.53 | 47.0 | 3.04e-01 | 100.0% | 87.7% |
| 4a17H02 | 3.30.60.300 | Alpha Beta › 2-Layer Sandwich › Wheat Germ Agglutinin (Isolectin 2); domain 1 › | 0.53 | 37.0 | 3.68e-01 | 73.0% | 92.3% |
ECOD (48)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3263125 | 150.1.1.0 ↗ | alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › Ferritin/Heme oxygenase › Ferritin | 0.85 | 61.0 | 3.78e-01 | 75.7% | 85.6% |
| 3978224 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.82 | 55.0 | 4.09e-01 | 70.3% | 87.8% |
| 3688231 | 5069.1.1.0 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes | 0.79 | 58.0 | 3.75e-01 | 78.4% | 34.5% |
| 3202126 | 1075.5.1.0 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Multidrug and toxic compound extrusion (MATE) transporter › Multidrug and toxic compound extrusion (MATE) transporter | 0.79 | 58.0 | 3.49e-01 | 78.4% | 77.8% |
| 4034205 | 5069.1.1.5 ↗ | alpha bundles › Transmembrane heme-binding four-helical bundle › Transmembrane heme-binding four-helical bundle › Transmembrane di-heme cytochromes › Cyt_bd_oxida_II | 0.76 | 55.0 | 3.61e-01 | 78.4% | 78.1% |
| 4104885 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.75 | 52.0 | 3.77e-01 | 73.0% | 33.7% |
| 4473360 | 101.1.2.170 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_51 | 0.75 | 55.0 | 4.24e-01 | 78.4% | 45.0% |
| 5033203 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.73 | 51.0 | 4.05e-01 | 73.0% | 40.0% |
| 4599024 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.73 | 50.0 | 3.79e-01 | 73.0% | 36.5% |
| 4140106 | 101.1.2.170 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_51 | 0.73 | 54.0 | 3.91e-01 | 81.1% | 36.2% |
| 4176786 | 2002.1.1.102 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › PHP | 0.73 | 52.0 | 3.06e-01 | 75.7% | 33.4% |
| 3973617 | 2002.1.1.0 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels | 0.71 | 49.0 | 2.92e-01 | 73.0% | 21.1% |
| 4276676 | 101.1.2.280 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_12 | 0.71 | 52.0 | 4.06e-01 | 78.4% | 48.0% |
| 3281989 | 2002.1.1.111 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › HpcH_HpaI | 0.71 | 52.0 | 3.07e-01 | 78.4% | 41.5% |
| 4969224 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 51.0 | 4.17e-01 | 75.7% | 44.6% |
| 4535381 | 101.1.2.603 ↗ | alpha arrays › HTH › HTH › winged helix domain › RNA_pol_Rpc82, HTH_9 | 0.70 | 55.0 | 3.36e-01 | 86.5% | 34.7% |
| 3989612 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.70 | 48.0 | 4.06e-01 | 73.0% | 45.0% |
| 5012246 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.69 | 48.0 | 3.95e-01 | 73.0% | 38.6% |
| 3606775 | 5001.1.1.0 ↗ | alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like | 0.69 | 59.0 | 3.48e-01 | 100.0% | 60.0% |
| 3555108 | 109.4.1.235 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › SRP68 | 0.69 | 56.0 | 3.12e-01 | 91.9% | 8.2% |
| 4659871 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.68 | 48.0 | 3.62e-01 | 78.4% | 40.0% |
| 4011100 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 44.0 | 3.14e-01 | 70.3% | 29.5% |
| 4018916 | 149.1.1.1 ↗ | alpha arrays › Cytochrome P450 › Cytochrome P450 › Cytochrome P450 › p450 | 0.65 | 56.0 | 3.17e-01 | 100.0% | 44.4% |
| 5018590 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 45.0 | 3.11e-01 | 73.0% | 67.8% |
| 3401938 | 3602.1.1.14 ↗ | alpha bundles › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › Kinase suppressor of Ras 1 helical hairpin domain › DUF733 | 0.65 | 53.0 | 4.15e-01 | 100.0% | 44.0% |
| 4029719 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.65 | 47.0 | 3.41e-01 | 75.7% | 30.5% |
| 3808802 | 101.1.2.10 ↗ | alpha arrays › HTH › HTH › winged helix domain › Linker_histone | 0.65 | 46.0 | 3.69e-01 | 73.0% | 41.3% |
| 3963507 | 4275.1.1.1 ↗ | alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Phage_connect_1 | 0.65 | 54.0 | 3.80e-01 | 89.2% | 83.6% |
| 4402403 | 101.1.2.92 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_11 | 0.63 | 48.0 | 3.90e-01 | 83.8% | 90.0% |
| 3944117 | 2008.1.1.0 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like | 0.63 | 53.0 | 3.46e-01 | 94.6% | 91.1% |
| 3782408 | 109.4.1.308 ↗ | alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › Vps39_1 | 0.62 | 54.0 | 3.29e-01 | 97.3% | 72.9% |
| 5037937 | 7523.1.1.22 ↗ | a/b three-layered sandwiches › Periplasmic binding protein-like II › Periplasmic binding protein-like II › Periplasmic binding protein-like II › ABC2_membrane_3 | 0.62 | 51.0 | 3.48e-01 | 91.9% | 40.7% |
| 3033172 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.62 | 46.0 | 3.67e-01 | 83.8% | 43.0% |
| 4162396 | 2007.2.1.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Flavoproteins › Flavodoxin_1 | 0.61 | 55.0 | 3.40e-01 | 100.0% | 40.5% |
| 5060609 | 632.8.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 › alpha-2-Macroglobulin receptor associated protein (RAP) domain 1 | 0.61 | 55.0 | 4.32e-01 | 100.0% | 77.3% |
| 3498969 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.60 | 53.0 | 3.16e-01 | 100.0% | 22.6% |
| 3997738 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.60 | 40.0 | 3.12e-01 | 73.0% | 29.4% |
| 3280201 | 101.1.2.1 ↗ | alpha arrays › HTH › HTH › winged helix domain › HTH_1 | 0.59 | 51.0 | 3.73e-01 | 91.9% | 98.9% |
| 3275918 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 47.0 | 3.81e-01 | 83.8% | 52.9% |
| 5021436 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 49.0 | 3.94e-01 | 94.6% | 92.0% |
| 4988478 | 2003.1.5.12 ↗ | a/b three-layered sandwiches › Rossmann-like › Rossmann-related › S-adenosyl-L-methionine-dependent methyltransferases › N6_N4_Mtase | 0.59 | 48.0 | 2.88e-01 | 94.6% | 37.7% |
| 5032961 | 101.1.2.894 ↗ | alpha arrays › HTH › HTH › winged helix domain › DUF2240 | 0.59 | 42.0 | 3.68e-01 | 75.7% | 50.9% |
| 3293296 | 101.1.2.10 ↗ | alpha arrays › HTH › HTH › winged helix domain › Linker_histone | 0.58 | 43.0 | 3.49e-01 | 73.0% | 37.1% |
| 3974491 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.57 | 47.0 | 4.00e-01 | 97.3% | 69.2% |
| 3289278 | 3236.1.1.1 ↗ | alpha complex topology › Cation-proton antiporter › Cation-proton antiporter (CPA) › Cation-proton antiporter (CPA) › Na_H_Exchanger | 0.56 | 51.0 | 2.87e-01 | 97.3% | 49.7% |
| 3338701 | 377.6.1.1 ↗ | few secondary structure elements › Glucocorticoid receptor-like › SBT domain › SBT domain › SBP | 0.56 | 39.0 | 3.86e-01 | 75.7% | 80.0% |
| 4337722 | 3001.1.1.1 ↗ | alpha arrays › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › Tetrahydrodipicolinate-N-succinlytransferase, N-terminal 3-helical domain › THDPS_N_2 | 0.55 | 38.0 | 3.14e-01 | 78.4% | 38.8% |
| 5052949 | 223.2.1.0 ↗ | a+b three layers › Profilin-like › profilin-like › profilin-like | 0.52 | 41.0 | 2.89e-01 | 91.9% | 46.4% |