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MW476490.1__QRD99590.1__X__00033

Bact-Vir

MW476490.1__QRD99590.1__X__00033

Identity

Accession:
MW476490 ↗
Kingdom:
phage

Quality

73.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_vB_Lcr_AB1

TaxID: 2803736

Cluster

View cluster (11 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 63-113_204-224_334-381
PDB
Domain cluster: representative
CATH (8)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1vk8A00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.58 37.0 4.11e-01 100.0% 81.7%
1lxjA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.57 37.0 3.92e-01 100.0% 74.8%
2iboA00 3.30.70.930 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 35.0 3.90e-01 100.0% 84.3%
4djbA00 3.30.70.2870 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Mastadenovirus E4 ORF3 0.54 45.0 4.62e-01 97.5% 91.5%
2w61A03 1.20.58.1040 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.54 30.0 3.07e-01 93.3% 52.5%
1f5aA01 3.30.70.590 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Poly(A) polymerase predicted RNA binding domain 0.54 42.0 4.48e-01 98.3% 94.4%
1zpwX00 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.53 31.0 3.62e-01 99.2% 84.1%
3t91B00 3.60.40.10 Alpha Beta › 4-Layer Sandwich › Phosphatase 2c; domain 1 › PPM-type phosphatase domain 0.50 38.0 3.06e-01 99.2% 42.5%
ECOD (8)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3942126 4038.1.1.8 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like 0.78 75.0 5.35e-01 100.0% 72.1%
3944936 4038.1.1.8 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like 0.78 75.0 5.31e-01 100.0% 70.8%
3164784 4038.1.1.8 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like 0.74 70.0 5.06e-01 100.0% 69.7%
5082726 4038.1.1.7 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_portal_2 0.73 69.0 5.20e-01 100.0% 86.5%
4954546 4038.1.1.0 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein 0.67 62.0 4.59e-01 100.0% 77.2%
4030791 4038.1.1.2 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Phage_prot_Gp6 0.66 61.0 4.35e-01 100.0% 65.4%
5062185 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 34.0 3.76e-01 100.0% 88.9%
4931771 304.4.1.0 ↗ a+b two layers › Alpha-beta plaits › Dimeric alpha+beta barrel › Dimeric alpha+beta barrel 0.51 35.0 3.77e-01 100.0% 85.0%
D2 medium residues 114-203
PDB
Domain cluster: rep: KR296690.1__AKJ73987.1__SP36_15__00015__D42-108
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1f9qD00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.52 29.0 3.36e-01 85.6% 74.2%
1eotA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.51 29.0 3.16e-01 85.6% 67.6%
7oc3A01 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.50 29.0 2.90e-01 100.0% 53.3%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3164773 4038.1.1.8 ↗ alpha bundles › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Alpha-helical domain in upper collar protein › Abc1-like 0.78 57.0 5.70e-01 100.0% 75.6%
3797602 4.1.1.0 ↗ beta barrels › SH3 › SH3 › SH3 0.60 41.0 4.56e-01 100.0% 92.9%
3583921 4.1.1.92 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_9 0.58 40.0 4.45e-01 100.0% 92.9%
3419158 4.8.1.0 ↗ beta barrels › SH3 › Chromo domain-like › Chromo domain-like 0.54 32.0 3.64e-01 100.0% 80.0%
5036592 4.17.1.1 ↗ beta barrels › SH3 › GatD N-terminal domain-like › GatD N-terminal domain-like › GatD_N 0.52 27.0 2.91e-01 98.9% 54.7%
D3 medium residues 225-313
PDB
Domain cluster: representative
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF06381.17 best Phage_portal_3 43.5 2.60e-11 100.0% 25.8%
CATH (3)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2wyhB02 1.10.1240.90 Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › 0.57 28.0 2.68e-01 95.5% 38.7%
3eytB00 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.53 36.0 3.12e-01 71.9% 85.7%
7vw6B02 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 22.0 2.50e-01 100.0% 42.9%
ECOD (5)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4988369 301.2.1.4 ↗ a+b three layers › Bacillus chorismate mutase-like › PurM N-terminal domain-like › PurM N-terminal domain-like › FGAR-AT_linker 0.71 28.0 2.10e-01 94.4% 15.6%
5056368 2485.1.1.0 ↗ a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like 0.70 43.0 3.51e-01 100.0% 35.5%
4111152 563.1.1.1 ↗ alpha bundles › ATPD N-terminal domain-like › N-terminal domain of the delta subunit of the F1F0-ATP synthase › N-terminal domain of the delta subunit of the F1F0-ATP synthase › OSCP 0.57 39.0 3.20e-01 70.8% 81.1%
1563571 301.9.1.1 ↗ a+b three layers › Bacillus chorismate mutase-like › HypA Ni-binding domain › HypA Ni-binding domain › HypA 0.57 28.0 3.22e-01 98.9% 63.2%
4030512 2008.1.1.7 ↗ a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › ERCC4 0.51 33.0 2.62e-01 71.9% 27.6%