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MW476490.1__QRD99592.1__X__00035

Bact-Vir

MW476490.1__QRD99592.1__X__00035

Identity

Accession:
MW476490 ↗
Kingdom:
phage

Quality

69.8 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_vB_Lcr_AB1

TaxID: 2803736

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 medium residues 51-118
PDB
Domain cluster: rep: MN830254.1__QHJ74824.1__X__00008__D9-57
Pfam (1)
AccessionNameScoreE-valueQ covHMM cov
PF01476.27 best LysM 35.6 1.00e-08 66.2% 100.0%
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2mkxA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.83 59.0 6.71e-01 77.9% 100.0%
4b8vA02 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.81 59.0 5.78e-01 76.5% 71.2%
2mtzA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.79 55.0 6.17e-01 77.9% 100.0%
1e0gA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.76 51.0 5.85e-01 75.0% 100.0%
4b8vA03 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.75 52.0 5.84e-01 73.5% 100.0%
4b8vA01 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.74 59.0 6.03e-01 85.3% 88.1%
2djpA00 3.10.350.10 Alpha Beta › Roll › Membrane-bound Lytic Murein Transglycosylase D; Chain A › LysM domain 0.73 52.0 5.07e-01 77.9% 67.5%
2gu1A01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.71 56.0 5.11e-01 83.8% 93.2%
3sluB01 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.66 52.0 4.74e-01 86.8% 94.5%
3sluA02 3.10.450.350 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.62 47.0 3.80e-01 83.8% 66.4%
7pzaA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 39.0 3.62e-01 72.1% 87.2%
2h6bA02 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.56 44.0 3.94e-01 85.3% 97.9%
3edpA01 1.10.10.10 Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.55 38.0 3.69e-01 70.6% 86.8%
4iiwA01 3.30.1490.480 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › Endolytic murein transglycosylase 0.54 40.0 3.94e-01 82.4% 78.9%
2j3lA03 3.90.960.10 Alpha Beta › Alpha-Beta Complex › YbaK protein › YbaK/aminoacyl-tRNA synthetase-associated domain 0.53 41.0 3.33e-01 89.7% 93.9%
3il6A01 3.40.47.10 Alpha Beta › 3-Layer(aba) Sandwich › Peroxisomal Thiolase; Chain A, domain 1 › Thiolase/Chalcone synthase 0.53 39.0 3.08e-01 83.8% 98.2%
2j0wA04 3.30.70.260 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › ACT domain 0.52 35.0 3.42e-01 76.5% 62.7%
1whwA01 3.30.70.330 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain 0.52 38.0 3.48e-01 79.4% 57.4%
ECOD (96)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3248434 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 62.0 7.21e-01 70.6% 100.0%
3165082 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.90 60.0 7.03e-01 70.6% 94.0%
3185732 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 63.0 6.94e-01 73.5% 100.0%
4157099 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.89 60.0 7.04e-01 72.1% 100.0%
4137479 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 64.0 5.85e-01 76.5% 60.0%
4277578 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 61.0 7.08e-01 73.5% 98.0%
4461167 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 63.0 6.50e-01 76.5% 78.5%
3501971 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.88 61.0 6.46e-01 75.0% 81.7%
3452845 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 61.0 6.69e-01 75.0% 89.1%
2047861 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 62.0 6.67e-01 75.0% 86.2%
4448562 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 57.0 6.31e-01 70.6% 83.6%
3981327 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 63.0 7.02e-01 75.0% 98.1%
4468802 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.87 63.0 6.00e-01 77.9% 65.8%
4249176 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.87 63.0 6.75e-01 79.4% 86.7%
3974521 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 62.0 6.60e-01 77.9% 85.0%
3903953 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 61.0 6.96e-01 77.9% 100.0%
3633502 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 64.0 6.11e-01 80.9% 67.9%
2074716 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 60.0 6.81e-01 73.5% 96.1%
3964920 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 60.0 6.45e-01 76.5% 84.5%
3711427 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 60.0 5.97e-01 76.5% 71.0%
3698672 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.86 59.0 5.03e-01 76.5% 46.7%
3349612 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.85 58.0 6.66e-01 75.0% 96.0%
3604763 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.85 59.0 5.44e-01 76.5% 57.6%
3898121 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 62.0 6.86e-01 79.4% 94.5%
3458171 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.85 61.0 6.28e-01 76.5% 78.5%
3165071 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 63.0 6.91e-01 82.4% 96.4%
4205026 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 65.0 6.66e-01 83.8% 84.6%
1758716 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 59.0 6.66e-01 75.0% 96.2%
3985839 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.84 65.0 6.42e-01 80.9% 80.0%
1178373 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 58.0 6.00e-01 73.5% 77.8%
4015813 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.83 59.0 6.23e-01 75.0% 83.3%
1759182 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 59.0 6.70e-01 76.5% 100.0%
2809236 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 60.0 6.25e-01 75.0% 88.7%
3925474 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 57.0 6.58e-01 73.5% 98.0%
3691772 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 60.0 6.57e-01 76.5% 92.7%
4149501 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 58.0 6.66e-01 75.0% 100.0%
3969916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 64.0 6.37e-01 80.9% 81.4%
3587382 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.83 60.0 6.62e-01 76.5% 98.2%
3230171 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.82 57.0 6.52e-01 73.5% 98.0%
3464064 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.82 62.0 5.73e-01 79.4% 72.9%
3636417 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.82 60.0 6.69e-01 77.9% 98.1%
3691758 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.82 59.0 6.52e-01 75.0% 94.5%
3365578 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.82 64.0 6.03e-01 82.4% 85.0%
3367888 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.82 62.0 6.22e-01 80.9% 94.3%
3240632 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.82 53.0 6.24e-01 72.1% 100.0%
2124917 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 63.0 4.62e-01 80.9% 36.6%
3234671 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 60.0 6.63e-01 80.9% 96.4%
3846469 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 57.0 5.17e-01 75.0% 55.6%
3381619 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 66.0 4.22e-01 86.8% 77.8%
4491522 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 59.0 6.25e-01 77.9% 86.7%
4404011 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 62.0 6.15e-01 83.8% 78.6%
4047213 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 58.0 6.30e-01 75.0% 100.0%
3413453 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 56.0 6.35e-01 73.5% 98.0%
3337328 101.15.1.14 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.81 65.0 4.23e-01 86.8% 77.5%
3303205 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.81 59.0 6.22e-01 76.5% 98.3%
3655335 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 62.0 4.53e-01 80.9% 35.8%
3456918 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 62.0 5.34e-01 80.9% 55.0%
3670445 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 64.0 4.01e-01 83.8% 39.4%
3320955 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.80 62.0 6.37e-01 82.4% 98.5%
3247196 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.80 58.0 6.13e-01 80.9% 86.7%
4023232 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.80 63.0 6.68e-01 88.2% 96.7%
3720958 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 56.0 6.34e-01 75.0% 100.0%
3338947 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.80 57.0 5.85e-01 75.0% 78.5%
3232962 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.80 56.0 5.91e-01 75.0% 83.3%
3337080 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.79 60.0 6.33e-01 79.4% 91.7%
3189252 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 59.0 6.03e-01 79.4% 81.5%
3413357 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 60.0 5.96e-01 80.9% 77.1%
3417561 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 65.0 4.13e-01 86.8% 65.1%
3250125 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 57.0 5.89e-01 76.5% 83.1%
3324708 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.79 60.0 6.37e-01 80.9% 93.3%
3821115 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.79 65.0 6.02e-01 88.2% 98.8%
3331840 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 59.0 6.45e-01 79.4% 98.2%
4492966 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 55.0 6.02e-01 75.0% 90.9%
4022922 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 58.0 6.30e-01 80.9% 96.4%
3240624 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 59.0 6.43e-01 88.2% 98.2%
4069716 101.15.1.14 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM, LysM2_CERK1_LYK3_4_5 0.78 60.0 4.86e-01 80.9% 50.0%
3269916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.78 54.0 5.71e-01 72.1% 85.0%
3267280 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.78 55.0 6.15e-01 76.5% 100.0%
3641672 101.15.1.5 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_LYK4_5 0.78 64.0 6.23e-01 88.2% 94.7%
3517460 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.77 56.0 6.20e-01 79.4% 94.5%
4662825 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.77 64.0 6.58e-01 89.7% 93.8%
3611431 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.77 56.0 5.99e-01 76.5% 95.0%
3306283 101.15.1.8 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM3_NFP 0.77 57.0 5.80e-01 77.9% 96.9%
3191020 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.76 59.0 6.28e-01 83.8% 96.7%
4680476 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.76 61.0 6.07e-01 85.3% 84.3%
2124476 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.74 60.0 4.66e-01 85.3% 43.7%
4555777 101.15.1.0 ↗ alpha arrays › HTH › LysM domain › LysM domain 0.74 59.0 5.85e-01 85.3% 94.3%
3810505 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.73 61.0 4.54e-01 89.7% 41.2%
2042916 101.15.1.1 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM 0.73 52.0 5.67e-01 75.0% 94.4%
3355076 101.15.1.6 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM2_CERK1_LYK3_4_5 0.71 54.0 5.73e-01 82.4% 98.3%
3592257 109.4.1.0 ↗ alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat 0.70 59.0 4.05e-01 89.7% 45.1%
3969915 101.15.1.12 ↗ alpha arrays › HTH › LysM domain › LysM domain › PF30403 0.68 50.0 4.99e-01 77.9% 75.7%
2644066 101.15.1.7 ↗ alpha arrays › HTH › LysM domain › LysM domain › LysM_RLK 0.64 52.0 5.07e-01 89.7% 90.8%
4446778 299.1.1.1 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.54 42.0 3.39e-01 86.8% 93.6%
4347677 299.1.1.1 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.54 42.0 3.41e-01 89.7% 94.5%
3589678 299.1.1.1 ↗ a+b complex topology › YbaK/ProRS associated domain › YbaK/ProRS associated domain › YbaK/ProRS associated domain › tRNA_edit 0.53 42.0 3.41e-01 89.7% 94.5%