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MW476490.1__QRD99596.1__X__00039

Bact-Vir

MW476490.1__QRD99596.1__X__00039

Identity

Accession:
MW476490 ↗
Kingdom:
phage

Quality

77.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Lactobacillus_phage_vB_Lcr_AB1

TaxID: 2803736

Cluster

View cluster (7 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 10-117
PDB
Domain cluster: rep: JF974295.1__AGH57512.1__PSYG_00051__00051__D3-108
CATH (18)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
2xmoA02 1.10.246.180 Mainly Alpha › Orthogonal Bundle › Serum Albumin; Chain A, Domain 1 › 0.65 40.0 4.43e-01 89.8% 77.9%
3k1zA02 1.10.150.720 Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Haloacid dehalogenase-like hydrolase 0.62 41.0 4.54e-01 92.6% 84.5%
3mfnB00 1.20.120.330 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 0.60 34.0 3.21e-01 79.6% 46.8%
1u89A00 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.57 41.0 3.76e-01 73.1% 92.1%
2oznB01 1.20.1270.90 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like 0.57 34.0 3.88e-01 75.9% 80.0%
6fjxA01 3.40.605.10 Alpha Beta › 3-Layer(aba) Sandwich › Aldehyde Dehydrogenase; Chain A, domain 1 › Aldehyde Dehydrogenase; Chain A, domain 1 0.56 39.0 2.93e-01 72.2% 69.0%
3tp3A02 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.56 42.0 3.83e-01 88.0% 58.8%
2f2cA02 1.10.472.10 Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Cyclin-like 0.56 42.0 4.24e-01 96.3% 81.1%
2hujA00 1.20.120.440 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › YppE-like 0.55 37.0 3.55e-01 83.3% 60.0%
1sj8A02 1.20.120.230 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Alpha-catenin/vinculin-like 0.54 41.0 3.93e-01 79.6% 78.7%
2wvnA01 1.20.120.1020 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Prion-inhibition and propagation, HeLo domain 0.53 40.0 3.30e-01 81.5% 77.9%
4akvA02 1.20.1270.60 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › Arfaptin homology (AH) domain/BAR domain 0.53 39.0 3.29e-01 77.8% 83.2%
3v1vA00 1.10.600.10 Mainly Alpha › Orthogonal Bundle › Farnesyl Diphosphate Synthase › Farnesyl Diphosphate Synthase 0.53 47.0 3.40e-01 100.0% 54.6%
1ui6A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.53 35.0 2.94e-01 89.8% 38.5%
6grjB01 1.20.1170.10 Mainly Alpha › Up-down Bundle › Hemolysin E; Chain: A; › 0.52 39.0 2.84e-01 79.6% 38.1%
3on2A00 1.10.357.10 Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2 0.52 39.0 3.28e-01 88.0% 45.8%
2hqcA01 1.20.1640.10 Mainly Alpha › Up-down Bundle › Multidrug efflux transporter AcrB transmembrane fold › Multidrug efflux transporter AcrB transmembrane domain 0.51 44.0 3.73e-01 100.0% 63.4%
6jpaE00 1.20.140.150 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › 0.50 37.0 3.21e-01 76.9% 56.2%
ECOD (14)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5082353 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.70 58.0 5.94e-01 98.1% 91.4%
5032434 4275.1.1.0 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like 0.68 61.0 6.14e-01 100.0% 95.5%
3585138 4275.1.1.9 ↗ alpha arrays › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › Hypothetical protein YqbG-like › PF26809 0.60 55.0 4.67e-01 100.0% 85.1%
4941415 1076.1.1.0 ↗ alpha bundles › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related › Intramembrane protease Rce1-related 0.57 39.0 3.59e-01 90.7% 51.3%
2530252 2500.1.1.3 ↗ a/b barrels › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › Ten stranded beta/alpha barrel › PFL-like 0.56 49.0 3.02e-01 100.0% 71.6%
3621549 5079.1.1.1 ↗ alpha duplicates or obligate multimers › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › Magnesium transporter MgtE membrane domain › MgtE 0.55 44.0 3.87e-01 87.0% 57.6%
3591456 5081.1.1.0 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like 0.55 49.0 4.09e-01 100.0% 88.4%
3639859 5001.1.1.62 ↗ alpha bundles › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › Family A G protein-coupled receptor-like › YIF1 0.54 46.0 3.88e-01 98.1% 87.0%
3924044 5073.1.1.0 ↗ alpha bundles › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain-related › Calcium ATPase transmembrane domain M 0.54 47.0 3.31e-01 100.0% 64.7%
3428029 632.1.1.0 ↗ alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain 0.53 39.0 4.05e-01 75.9% 89.0%
3190320 101.1.10.0 ↗ alpha arrays › HTH › HTH › Cyclin-like 0.53 41.0 3.79e-01 97.2% 65.2%
3231735 106.1.1.1 ↗ alpha arrays › Globin-like › Globin-like › Globin-like › Globin 0.51 40.0 3.41e-01 84.3% 81.1%
3608466 5081.1.1.0 ↗ alpha bundles › Rhomboid-like › Rhomboid-like › Rhomboid-like 0.50 44.0 3.54e-01 100.0% 80.4%
5021445 4953.1.1.0 ↗ beta barrels › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like › L-aspartase C-terminal domain-like 0.50 38.0 3.75e-01 79.6% 82.6%