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MW476490.1__QRD99598.1__X__00041
Bact-VirMW476490.1__QRD99598.1__X__00041
Identity
- Accession:
- MW476490 ↗
- Kingdom:
- phage
Quality
68.8
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 11-26_49-127
Domain cluster:
rep: JQ362498.1__AFF28086.1__PAU_88__00081__D163-188_201-297
CATH (30)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2ey4D00 | 2.40.10.230 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Probable tRNA pseudouridine synthase domain | 0.77 | 46.0 | 5.15e-01 | 80.0% | 76.0% |
| 2kz4A00 | 2.40.10.270 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Bacteriophage SPP1 head-tail adaptor protein | 0.70 | 64.0 | 6.08e-01 | 100.0% | 94.6% |
| 6zlvA01 | 2.40.10.350 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Rod shape-determining protein MreC, domain 2 | 0.69 | 53.0 | 5.86e-01 | 95.8% | 100.0% |
| 2as9A02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.69 | 51.0 | 5.13e-01 | 96.8% | 77.7% |
| 5eokA05 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.66 | 55.0 | 4.13e-01 | 95.8% | 37.4% |
| 4kktA02 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.66 | 52.0 | 5.04e-01 | 83.2% | 76.2% |
| 3kyfA02 | 2.40.10.220 | Mainly Beta › Beta Barrel › Thrombin, subunit H › predicted glycosyltransferase like domains | 0.65 | 53.0 | 4.97e-01 | 97.9% | 70.9% |
| 1a1rA02 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.64 | 45.0 | 4.76e-01 | 94.7% | 82.4% |
| 2aq6A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 54.0 | 4.72e-01 | 96.8% | 83.2% |
| 2iabA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.61 | 55.0 | 4.74e-01 | 96.8% | 72.7% |
| 3k6yA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.61 | 43.0 | 4.44e-01 | 96.8% | 78.3% |
| 1qz8A01 | 2.40.10.250 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Replicase NSP9 | 0.60 | 49.0 | 4.75e-01 | 96.8% | 79.0% |
| 1wv4B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.60 | 51.0 | 4.35e-01 | 97.9% | 57.8% |
| 1ci0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 53.0 | 4.10e-01 | 97.9% | 68.6% |
| 2q9kA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 53.0 | 4.54e-01 | 97.9% | 63.9% |
| 3dnhA01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.59 | 52.0 | 4.45e-01 | 96.8% | 74.2% |
| 3r5lA00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 52.0 | 4.88e-01 | 97.9% | 93.1% |
| 3cp3A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 51.0 | 4.67e-01 | 96.8% | 81.9% |
| 3h96C00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 51.0 | 4.57e-01 | 98.9% | 84.8% |
| 5jv4A00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.58 | 50.0 | 4.42e-01 | 96.8% | 88.0% |
| 3iuwA00 | 2.30.130.30 | Mainly Beta › Roll › Archaeosine Trna-guanine Transglycosylase; Chain: A, domain 4 › Hypothetical protein. | 0.58 | 44.0 | 4.82e-01 | 88.4% | 97.5% |
| 3db0B00 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.57 | 51.0 | 4.66e-01 | 96.8% | 87.1% |
| 2qmiA02 | 2.40.128.210 | Mainly Beta › Beta Barrel › Lipocalin › Pab87 octamerisation domain | 0.54 | 29.0 | 2.91e-01 | 95.8% | 49.0% |
| 5yjlD01 | 2.30.110.10 | Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A | 0.54 | 47.0 | 4.14e-01 | 96.8% | 71.1% |
| 2fgzA01 | 2.60.40.1130 | Mainly Beta › Sandwich › Immunoglobulin-like › Rab geranylgeranyltransferase alpha-subunit, insert domain | 0.53 | 42.0 | 4.02e-01 | 87.4% | 89.6% |
| 4n68A00 | 2.60.40.10 | Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins | 0.53 | 35.0 | 3.50e-01 | 80.0% | 64.6% |
| 1vf7F01 | 2.40.30.170 | Mainly Beta › Beta Barrel › Elongation Factor Tu (Ef-tu); domain 3 › Efflux pump adaptor protein, beta barrel domain | 0.52 | 39.0 | 3.86e-01 | 80.0% | 84.3% |
| 2jxtA01 | 3.10.20.10 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › | 0.52 | 32.0 | 3.47e-01 | 70.5% | 75.0% |
| 1agjA01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.52 | 46.0 | 4.13e-01 | 100.0% | 93.3% |
| 2as9B01 | 2.40.10.10 | Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases | 0.51 | 41.0 | 4.04e-01 | 98.9% | 83.2% |
ECOD (29)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4259810 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.77 | 46.0 | 5.00e-01 | 80.0% | 71.2% |
| 5077063 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.75 | 45.0 | 5.02e-01 | 80.0% | 76.0% |
| 3674829 | 1.1.13.61 ↗ | beta barrels › cradle loop barrel › RIFT-related › Phage tail proteins › Gar1 | 0.74 | 51.0 | 5.80e-01 | 95.8% | 95.7% |
| 5035997 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.72 | 43.0 | 4.94e-01 | 80.0% | 81.4% |
| 3963092 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.70 | 51.0 | 5.19e-01 | 96.8% | 76.8% |
| 3978877 | 1.1.7.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C | 0.68 | 44.0 | 4.49e-01 | 83.2% | 67.8% |
| 3409540 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.66 | 58.0 | 4.22e-01 | 94.7% | 39.6% |
| 3401129 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.65 | 57.0 | 4.28e-01 | 96.8% | 43.0% |
| 1063651 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.64 | 56.0 | 4.16e-01 | 96.8% | 43.4% |
| 5017568 | 1.1.7.20 ↗ | beta barrels › cradle loop barrel › RIFT-related › Alanine racemase-C › Gar1 | 0.64 | 40.0 | 4.32e-01 | 78.9% | 75.0% |
| 3392280 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.64 | 56.0 | 4.04e-01 | 96.8% | 35.9% |
| 3411403 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.63 | 55.0 | 3.96e-01 | 95.8% | 38.5% |
| 3290365 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.63 | 51.0 | 4.68e-01 | 93.7% | 67.5% |
| 3561778 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.62 | 55.0 | 4.05e-01 | 98.9% | 89.0% |
| 5063379 | 1.1.17.3 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin_2 | 0.62 | 46.0 | 3.80e-01 | 96.8% | 42.2% |
| 3399834 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.62 | 54.0 | 4.13e-01 | 96.8% | 41.8% |
| 3752007 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.62 | 53.0 | 4.00e-01 | 95.8% | 42.6% |
| 3186280 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.61 | 54.0 | 4.16e-01 | 98.9% | 68.4% |
| 3546177 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.61 | 50.0 | 3.82e-01 | 94.7% | 37.0% |
| 3106034 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.60 | 52.0 | 3.85e-01 | 96.8% | 37.2% |
| 3404225 | 1.1.17.1 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › Trypsin | 0.60 | 51.0 | 3.92e-01 | 95.8% | 41.9% |
| 4999142 | 1.1.5.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel | 0.60 | 53.0 | 4.28e-01 | 97.9% | 66.1% |
| 1037154 | 1.1.5.34 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Pyrid_oxidase_2 | 0.59 | 52.0 | 4.40e-01 | 96.8% | 71.8% |
| 3224340 | 1.1.17.8 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 › DUF316 | 0.58 | 46.0 | 3.45e-01 | 96.8% | 33.5% |
| 5063188 | 1.1.5.33 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel › Trypsin_2 | 0.58 | 47.0 | 3.67e-01 | 96.8% | 39.5% |
| 3592970 | 206.1.1.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase | 0.57 | 45.0 | 3.19e-01 | 86.3% | 51.0% |
| 3199494 | 1.1.17.0 ↗ | beta barrels › cradle loop barrel › RIFT-related › FMN-binding split barrel 2 | 0.54 | 46.0 | 3.56e-01 | 96.8% | 42.7% |
| 3587863 | 3158.1.1.1 ↗ | beta barrels › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › uncharacterized protein RUMGNA_01417 › DUF5348 | 0.53 | 30.0 | 3.14e-01 | 96.8% | 57.6% |
| 3622522 | 11.1.1.54 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like › CBM_21 | 0.53 | 38.0 | 3.46e-01 | 100.0% | 56.8% |