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MW478291.1__QTZ82917.1__phiCPD_00035__00035

Bact-Vir

MW478291.1__QTZ82917.1__phiCPD_00035__00035

Identity

Accession:
MW478291 ↗
Kingdom:
phage

Quality

80.1 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 11-64
PDB
Domain cluster: representative
CATH (53)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
5m3nA03 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.70 51.0 4.32e-01 85.2% 45.4%
1xexB00 3.40.50.300 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases 0.70 50.0 3.60e-01 90.7% 26.1%
3wkmB01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.66 56.0 4.79e-01 100.0% 62.8%
6iccA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.64 53.0 4.71e-01 100.0% 70.9%
7w6yA02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.64 54.0 4.81e-01 100.0% 75.3%
2zpmA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.63 53.0 4.66e-01 100.0% 72.1%
4depC02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.63 48.0 3.96e-01 85.2% 58.8%
2o18A00 3.10.520.10 Alpha Beta › Roll › T-fold › ApbE-like domains 0.62 46.0 2.92e-01 83.3% 19.2%
4o06A00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.62 52.0 4.34e-01 98.1% 59.8%
1fr3A00 2.40.50.100 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain 0.61 40.0 3.77e-01 98.1% 53.7%
1efpB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.61 50.0 3.26e-01 90.7% 55.3%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.60 49.0 3.35e-01 100.0% 76.9%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.59 44.0 4.36e-01 81.5% 83.9%
1xfdA01 2.140.10.30 Mainly Beta › 8 Propeller › Methanol Dehydrogenase; Chain A › Dipeptidylpeptidase IV, N-terminal domain 0.59 43.0 2.55e-01 79.6% 91.2%
3ifvC00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.58 49.0 3.27e-01 100.0% 30.8%
5w7zA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.58 48.0 3.94e-01 100.0% 69.0%
6kbyA00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.58 45.0 2.73e-01 87.0% 12.7%
2qrdE01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 49.0 3.48e-01 100.0% 83.9%
2vugA02 3.30.1490.70 Alpha Beta › 2-Layer Sandwich › Dna Ligase; domain 1 › 0.58 41.0 3.93e-01 83.3% 75.0%
2z86D02 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.58 47.0 3.09e-01 96.3% 76.2%
2a22B00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.58 42.0 2.94e-01 81.5% 49.8%
6fezA02 2.40.10.10 Mainly Beta › Beta Barrel › Thrombin, subunit H › Trypsin-like serine proteases 0.57 47.0 4.07e-01 100.0% 88.3%
4e6xB00 3.40.710.10 Alpha Beta › 3-Layer(aba) Sandwich › Beta-lactamase › DD-peptidase/beta-lactamase superfamily 0.57 45.0 2.94e-01 94.4% 75.1%
1rwzA00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.57 48.0 3.19e-01 100.0% 29.5%
4jj0B00 2.30.42.60 Mainly Beta › Roll › Pdz3 Domain › 0.57 46.0 3.34e-01 98.1% 31.1%
1g29102 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.56 39.0 4.20e-01 96.3% 88.9%
1ou8A00 2.30.30.220 Mainly Beta › Roll › SH3 type barrels. › SspB-like 0.56 40.0 3.33e-01 79.6% 74.5%
2gy5A01 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.56 41.0 3.54e-01 85.2% 66.7%
2ix2B00 3.70.10.10 Alpha Beta › Box › Proliferating Cell Nuclear Antigen › 0.55 47.0 3.10e-01 100.0% 32.2%
1azpA00 2.40.50.40 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › 0.55 36.0 3.46e-01 96.3% 54.5%
4m7xA01 3.30.420.40 Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain 0.55 45.0 3.83e-01 92.6% 57.1%
2qrdB01 2.20.25.290 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › 0.55 35.0 3.86e-01 85.2% 94.6%
2kjpA01 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 43.0 3.89e-01 90.7% 63.3%
3zleA03 2.10.70.70 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.54 34.0 3.80e-01 90.7% 89.7%
2i6vA00 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 39.0 3.49e-01 83.3% 52.9%
3k50A02 2.30.42.10 Mainly Beta › Roll › Pdz3 Domain › PDZ domain 0.54 43.0 3.59e-01 92.6% 54.0%
5agvA01 3.10.150.10 Alpha Beta › Roll › DNA Polymerase III; Chain A, domain 2 › DNA Polymerase III, subunit A, domain 2 0.54 43.0 3.50e-01 100.0% 62.9%
2it9A00 2.30.31.10 Mainly Beta › Roll › Transcriptional Co-activator pc4; Chain A › Transcriptional Coactivator Pc4; Chain A 0.53 43.0 3.52e-01 100.0% 55.8%
3c4sA00 2.30.30.140 Mainly Beta › Roll › SH3 type barrels. › 0.53 41.0 4.04e-01 85.2% 93.0%
4l2iB00 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.53 42.0 2.77e-01 90.7% 49.4%
4bfiB02 2.60.40.10 Mainly Beta › Sandwich › Immunoglobulin-like › Immunoglobulins 0.52 38.0 3.37e-01 83.3% 67.8%
5nr1A01 3.40.30.10 Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin 0.52 44.0 3.65e-01 100.0% 72.6%
3hlzA02 1.20.120.1090 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › 0.52 39.0 3.23e-01 94.4% 81.4%
1mknA00 2.20.60.10 Mainly Beta › Single Sheet › Heparin-binding Growth Factor, Midkine; Chain A › Pleiotrophin/Midkine, N-terminal domain 0.52 32.0 3.12e-01 83.3% 55.9%
3p9aF00 1.10.132.80 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › 0.52 39.0 3.04e-01 85.2% 73.1%
5b1rA00 3.10.100.10 Alpha Beta › Roll › Mannose-Binding Protein A; Chain A › Mannose-Binding Protein A, subunit A 0.51 38.0 3.19e-01 88.9% 50.0%
2kknA00 3.60.21.10 Alpha Beta › 4-Layer Sandwich › Purple Acid Phosphatase; chain A, domain 2 › Metallo-dependent phosphatases 0.51 37.0 2.81e-01 83.3% 58.6%
2kqrA01 3.30.1910.20 Alpha Beta › 2-Layer Sandwich › so0334 like fold › asparaginyl-tRNA synthetase, N-terminal domain 0.51 42.0 3.91e-01 100.0% 82.4%
2it1A03 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.51 35.0 3.45e-01 96.3% 65.6%
4oxwA00 3.30.1520.10 Alpha Beta › 2-Layer Sandwich › PX Domain › Phox-like domain 0.51 44.0 3.57e-01 100.0% 93.4%
1vw4M01 2.30.30.790 Mainly Beta › Roll › SH3 type barrels. › 0.51 38.0 2.96e-01 85.2% 46.2%
2wpvE00 1.25.40.10 Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain 0.51 40.0 2.61e-01 92.6% 38.9%
2f9iD00 3.90.226.10 Alpha Beta › Alpha-Beta Complex › 2-enoyl-CoA Hydratase; Chain A, domain 1 › 2-enoyl-CoA Hydratase; Chain A, domain 1 0.51 43.0 2.80e-01 100.0% 76.5%
ECOD (60)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
5059796 4326.1.1.0 a+b two layers › ERH-like › ERH-like › ERH-like 0.70 60.0 5.57e-01 98.1% 94.2%
3739044 376.1.1.32 few secondary structure elements › RING/U-box-like › RING/U-box-like › RING/U-box › zf-UBP_var 0.69 55.0 4.40e-01 88.9% 51.8%
3758538 216.1.1.27 a+b two layers › UBC-like › UBC-like › UBC-like › HGTP_anticodon2 0.69 53.0 4.12e-01 83.3% 63.5%
5006740 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.68 53.0 4.22e-01 98.1% 40.9%
4062728 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.68 56.0 4.86e-01 98.1% 65.6%
3875074 7502.1.1.7 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2 0.67 52.0 4.16e-01 85.2% 65.5%
5027944 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.67 56.0 4.53e-01 98.1% 50.0%
4573033 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.67 55.0 4.81e-01 98.1% 65.6%
4331476 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.67 55.0 4.57e-01 98.1% 65.7%
1396369 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.66 54.0 4.81e-01 98.1% 69.8%
4880634 223.3.1.1 a+b three layers › Profilin-like › a+b domain in beta-lactamase/transpeptidase-like proteins › a+b domain in beta-lactamase/transpeptidase-like proteins › Beta-lactamase 0.66 44.0 4.36e-01 83.3% 64.4%
3964841 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.66 55.0 4.61e-01 98.1% 63.0%
4530514 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.66 55.0 4.63e-01 100.0% 62.0%
4024483 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.65 48.0 4.20e-01 83.3% 50.6%
4530301 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.65 54.0 4.87e-01 100.0% 70.0%
3254615 11.1.1.0 beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.65 49.0 4.14e-01 85.2% 62.1%
4200319 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.64 51.0 4.07e-01 90.7% 43.6%
4212763 7.1.1.1 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ 0.64 48.0 4.19e-01 83.3% 82.4%
3993677 823.1.1.0 a+b two layers › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW › Head-to-tail joining protein W, gpW 0.64 52.0 4.80e-01 100.0% 70.0%
3535221 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.63 52.0 4.36e-01 96.3% 60.0%
3611538 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.62 46.0 4.67e-01 85.2% 89.1%
4957226 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.62 50.0 4.28e-01 98.1% 53.0%
4322608 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.62 46.0 4.07e-01 83.3% 82.4%
3964829 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.62 45.0 4.04e-01 85.2% 53.6%
4055478 7.1.1.10 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_6 0.62 45.0 3.83e-01 81.5% 46.3%
415 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.61 40.0 3.77e-01 98.1% 53.7%
3243593 304.3.1.0 a+b two layers › Alpha-beta plaits › HMA-related › HMA, heavy metal-associated domain 0.61 51.0 4.25e-01 100.0% 92.4%
4397259 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.61 45.0 3.84e-01 85.2% 47.6%
4955256 7.1.1.5 beta barrels › PDZ domain › PDZ domain › PDZ domain › PDZ_2 0.61 47.0 4.04e-01 90.7% 50.5%
1693005 2484.1.1.0 mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like 0.60 42.0 3.68e-01 100.0% 46.1%
5061930 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.60 41.0 3.52e-01 100.0% 41.1%
4983766 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.60 40.0 3.19e-01 98.1% 31.9%
3387994 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.60 39.0 3.49e-01 98.1% 45.0%
5020098 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 39.0 3.68e-01 98.1% 52.9%
4514268 2.4.1.1 beta barrels › OB-fold › MOP-like › MOP-like › TOBE 0.59 40.0 3.44e-01 98.1% 42.7%
3838381 2004.1.1.308 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › AAA_21 0.59 47.0 2.98e-01 96.3% 91.8%
3965386 2.4.1.6 beta barrels › OB-fold › MOP-like › MOP-like › CysA_C_terminal 0.59 38.0 3.06e-01 98.1% 30.5%
4479761 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.58 45.0 3.72e-01 85.2% 47.0%
5011281 227.1.1.6 a+b two layers › DNA clamp › DNA clamp › DNA clamp › PCNA_C 0.58 49.0 3.85e-01 100.0% 59.2%
4007430 7.1.1.0 beta barrels › PDZ domain › PDZ domain › PDZ domain 0.58 47.0 4.04e-01 92.6% 56.7%
5011439 802.1.1.0 a+b two layers › Hypothetical protein TM0160 › Hypothetical protein TM0160 › Hypothetical protein TM0160 0.56 41.0 3.04e-01 100.0% 29.7%
4944239 301.13.1.0 a+b three layers › Bacillus chorismate mutase-like › DAK1/DegV C-terminal domain › DAK1/DegV C-terminal domain 0.56 40.0 3.16e-01 79.6% 77.7%
4056782 2005.1.1.0 a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains 0.56 44.0 2.58e-01 90.7% 22.5%
3386077 2.4.1.0 beta barrels › OB-fold › MOP-like › MOP-like 0.55 35.0 3.70e-01 98.1% 77.8%
3164196 2008.1.1.15 a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › HSDR_N 0.55 43.0 2.90e-01 94.4% 82.4%
4973804 220.1.1.0 beta barrels › PH domain-like › PH domain-like › PH domain-like 0.54 37.0 3.41e-01 100.0% 53.3%
5077254 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.54 41.0 2.47e-01 92.6% 34.2%
5026951 2.4.1.2 beta barrels › OB-fold › MOP-like › MOP-like › TOBE_2 0.54 36.0 2.86e-01 100.0% 30.4%
3281945 4.1.1.97 beta barrels › SH3 › SH3 › SH3 › DUF150_C 0.53 39.0 3.41e-01 83.3% 65.6%
4547801 4.1.1.0 beta barrels › SH3 › SH3 › SH3 0.52 40.0 3.44e-01 85.2% 58.9%
959119 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.52 40.0 4.00e-01 85.2% 96.3%
3940062 2007.2.3.1 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › Y_phosphatase 0.52 42.0 2.69e-01 96.3% 50.5%
3879653 4.1.1.223 beta barrels › SH3 › SH3 › SH3 › KIF2A-like_1st 0.52 40.0 3.71e-01 87.0% 78.6%
3376660 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.51 41.0 3.63e-01 92.6% 60.0%
3976834 4.1.1.156 beta barrels › SH3 › SH3 › SH3 › DUF2158 0.51 38.0 3.91e-01 81.5% 92.0%
3265225 2003.1.2.0 a/b three-layered sandwiches › Rossmann-like › Rossmann-related › FAD/NAD(P)-binding domain 0.51 36.0 2.27e-01 100.0% 12.6%
3499134 2485.1.1.1 a+b three layers › Thioredoxin-like › Thioredoxin-like › Thioredoxin-like › Thioredoxin 0.51 44.0 3.30e-01 100.0% 65.7%
3675511 4.1.1.75 beta barrels › SH3 › SH3 › SH3 › NdhS 0.50 39.0 3.49e-01 87.0% 81.2%
3471048 5.1.4.1 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › WD40 0.50 41.0 2.46e-01 100.0% 12.5%
3167693 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.50 40.0 2.39e-01 94.4% 64.9%