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MW478291.1__QTZ82943.1__phiCPD_00061__00061
Bact-VirMW478291.1__QTZ82943.1__phiCPD_00061__00061
Identity
- Accession:
- MW478291 ↗
- Kingdom:
- phage
Quality
89.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 4-108
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF02498.23 best | Bro-N | 30.9 | 4.70e-07 | 84.8% | 100.0% |
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1i3zA00 | 3.30.505.10 | Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain | 0.57 | 36.0 | 3.69e-01 | 96.2% | 65.0% |
| 1r0vA02 | 3.40.1170.20 | Alpha Beta › 3-Layer(aba) Sandwich › MutS, DNA mismatch repair protein, domain I › tRNA intron endonuclease, N-terminal domain | 0.52 | 29.0 | 3.27e-01 | 83.8% | 72.0% |
ECOD (9)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3163642 | 101.1.9.63 ↗ | alpha arrays › HTH › HTH › Putative DNA-binding domain › Bro-N | 0.69 | 62.0 | 6.14e-01 | 100.0% | 91.8% |
| 5053202 | 386.1.1.0 ↗ | few secondary structure elements › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers › beta-beta-alpha zinc fingers | 0.55 | 24.0 | 3.37e-01 | 81.9% | 100.0% |
| 3479395 | 64.1.1.0 ↗ | beta meanders › WW domain-like › WW domain › WW domain | 0.55 | 21.0 | 3.09e-01 | 71.4% | 97.0% |
| 4012105 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.55 | 44.0 | 3.71e-01 | 89.5% | 85.2% |
| 3963879 | 829.1.1.1 ↗ | a+b duplicates or obligate multimers › NinB › NinB › NinB › NinB | 0.53 | 37.0 | 4.09e-01 | 72.4% | 97.6% |
| 4350643 | 206.1.1.1 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase | 0.52 | 46.0 | 3.30e-01 | 100.0% | 88.5% |
| 4929015 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.50 | 28.0 | 3.23e-01 | 75.2% | 74.7% |
| 3585595 | 242.2.1.0 ↗ | a+b two layers › Homing endonucleases-like › tRNA-intron endonuclease N-terminal domain-like › tRNA-intron endonuclease N-terminal domain-like | 0.50 | 32.0 | 3.71e-01 | 86.7% | 94.3% |
| 5048394 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.50 | 22.0 | 3.17e-01 | 85.7% | 95.6% |
D2
high
residues 155-239
Domain cluster:
rep: MK449003.1__QBX31679.1__Javan648_0053__00012__D65-165
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF10552.15 best | ORF6C | 90.4 | 1.10e-25 | 94.1% | 67.5% |
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4ymuD00 | 1.10.3720.10 | Mainly Alpha › Orthogonal Bundle › MetI-like fold › MetI-like | 0.65 | 48.0 | 3.53e-01 | 76.5% | 83.7% |
| 2aplA01 | 1.10.8.330 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › PG0816-like | 0.63 | 46.0 | 5.07e-01 | 89.4% | 98.5% |
| 2a7oA00 | 1.10.1740.100 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › Set2, Rpb1 interacting domain | 0.61 | 53.0 | 5.03e-01 | 97.6% | 90.0% |
| 1gq2A02 | 3.40.50.720 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › NAD(P)-binding Rossmann-like Domain | 0.61 | 54.0 | 3.71e-01 | 100.0% | 39.7% |
| 1kblA05 | 1.20.80.30 | Mainly Alpha › Up-down Bundle › Acyl-CoA Binding Protein › | 0.61 | 45.0 | 4.48e-01 | 96.5% | 76.4% |
| 4yerA01 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.60 | 43.0 | 3.24e-01 | 83.5% | 29.7% |
| 3hzjA03 | 1.10.472.80 | Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › Ypt/Rab-GAP domain of gyp1p, domain 3 | 0.58 | 48.0 | 4.04e-01 | 91.8% | 59.1% |
| 2k3qA00 | 1.10.274.70 | Mainly Alpha › Orthogonal Bundle › Enzyme I; Chain A, domain 2 › Spidroin, N-terminal domain | 0.57 | 44.0 | 4.04e-01 | 98.8% | 61.9% |
| 3egoA02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.56 | 44.0 | 3.92e-01 | 84.7% | 89.3% |
| 1j5wA02 | 1.20.58.180 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Class II aaRS and biotin synthetases; domain 2 | 0.56 | 33.0 | 3.43e-01 | 72.9% | 63.6% |
| 1v4aA03 | 1.20.120.330 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Nucleotidyltransferases domain 2 | 0.55 | 41.0 | 3.47e-01 | 81.2% | 79.1% |
| 2cdqA02 | 1.20.120.1320 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Aspartokinase, catalytic domain | 0.54 | 42.0 | 4.12e-01 | 98.8% | 76.3% |
| 1lvfB00 | 1.20.58.90 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › | 0.53 | 35.0 | 3.26e-01 | 72.9% | 55.8% |
| 4dwlA00 | 1.20.1440.60 | Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 23S rRNA-intervening sequence | 0.52 | 40.0 | 3.73e-01 | 92.9% | 65.7% |
| 4m70I00 | 1.20.5.4130 | Mainly Alpha › Up-down Bundle › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › | 0.50 | 42.0 | 3.96e-01 | 98.8% | 82.4% |
| 3qvmB00 | 3.40.50.1820 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Alpha/Beta hydrolase fold, catalytic domain | 0.50 | 41.0 | 2.92e-01 | 92.9% | 76.1% |
| 1yj8A02 | 1.10.1040.10 | Mainly Alpha › Orthogonal Bundle › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 › N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2 | 0.50 | 41.0 | 3.46e-01 | 94.1% | 94.3% |
ECOD (22)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3589701 | 632.24.1.3 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › GBS CAMP factor C-terminal domain › GBS CAMP factor C-terminal domain › ORF6C | 0.96 | 88.0 | 8.81e-01 | 97.6% | 95.3% |
| 3230949 | 103.4.1.1 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX | 0.68 | 48.0 | 5.08e-01 | 82.4% | 84.0% |
| 3596205 | 148.1.3.0 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain | 0.65 | 50.0 | 4.89e-01 | 91.8% | 74.7% |
| 3598953 | 206.1.3.0 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp | 0.62 | 46.0 | 3.02e-01 | 96.5% | 17.2% |
| 2523883 | 7073.1.1.1 ↗ | alpha arrays › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › C-terminal domain of Malic enzyme › Malic_M | 0.62 | 49.0 | 4.65e-01 | 92.9% | 72.5% |
| 4961566 | 5065.1.1.3 ↗ | alpha bundles › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › Type II ABC importer transmembrane domain fold › BPD_transp_2 | 0.59 | 45.0 | 3.21e-01 | 82.4% | 38.3% |
| 4957883 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.57 | 40.0 | 3.50e-01 | 72.9% | 71.5% |
| 4993429 | 5054.1.1.6 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › TrkH | 0.57 | 41.0 | 3.72e-01 | 75.3% | 73.0% |
| 3436831 | 601.4.1.52 ↗ | alpha bundles › Four-helical up-and-down bundle › Histidine kinase associated sensor domains › Histidine kinase associated sensor domains › Auxin_canalis | 0.56 | 40.0 | 3.45e-01 | 72.9% | 56.2% |
| 4554168 | 1079.1.1.13 ↗ | alpha complex topology › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Transmembrane reductase CcdA › Mntp | 0.56 | 39.0 | 3.15e-01 | 72.9% | 69.1% |
| 3312807 | 3922.1.1.7 ↗ | alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Auxin_canalis | 0.55 | 39.0 | 3.24e-01 | 72.9% | 77.9% |
| 3192375 | 7579.1.1.1 ↗ | a/b three-layered sandwiches › alpha/beta-Hydrolases › alpha/beta-Hydrolases › alpha/beta-Hydrolases › COesterase | 0.55 | 48.0 | 2.92e-01 | 98.8% | 36.7% |
| 4423640 | 5059.1.1.5 ↗ | alpha bundles › Drug/Metabolite transporter › Drug/Metabolite transporter › Drug/Metabolite transporter › UAA | 0.55 | 44.0 | 2.94e-01 | 87.1% | 65.6% |
| 3265419 | 1128.1.1.0 ↗ | alpha bundles › LYR protein › LYR protein › LYR protein | 0.54 | 44.0 | 4.56e-01 | 92.9% | 100.0% |
| 3561131 | 108.1.1.0 ↗ | alpha arrays › EF-hand › EF-hand-related › EF-hand | 0.54 | 46.0 | 3.89e-01 | 94.1% | 87.9% |
| 3800950 | 188.1.1.0 ↗ | alpha arrays › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain › Nuclear receptor ligand-binding domain | 0.53 | 47.0 | 3.52e-01 | 100.0% | 62.3% |
| 4944701 | 2004.1.1.0 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases | 0.53 | 41.0 | 2.71e-01 | 82.4% | 47.9% |
| 5061845 | 603.1.1.0 ↗ | alpha bundles › STAT-like › t-snare proteins › t-snare proteins | 0.53 | 33.0 | 3.14e-01 | 72.9% | 53.0% |
| 3892515 | 632.22.1.173 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Cell division protein EzrA repeats › Cell division protein EzrA repeats › DUF2678 | 0.53 | 44.0 | 4.22e-01 | 90.6% | 80.0% |
| 5069745 | 606.1.1.1 ↗ | alpha complex topology › Nop N-terminal domain › Nop N-terminal domain › Nop N-terminal domain › Nop | 0.53 | 36.0 | 3.39e-01 | 72.9% | 95.5% |
| 3973240 | 5050.1.1.9 ↗ | alpha complex topology › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › Major facilitator superfamily (MFS) general substrate transporter › MFS_1 | 0.52 | 41.0 | 3.25e-01 | 91.8% | 44.9% |
| 3880538 | 632.1.1.28 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Families 57/38 glycoside transferase middle domain › Families 57/38 glycoside transferase middle domain › DUF2678 | 0.50 | 41.0 | 4.18e-01 | 94.1% | 96.5% |