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MW478292.1__QTZ82980.1__phiCPE_00004__00004
Bact-VirMW478292.1__QTZ82980.1__phiCPE_00004__00004
Identity
- Accession:
- MW478292 ↗
- Kingdom:
- phage
Quality
82.8
mean pLDDT
Cluster
View cluster (3 members)3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 6-65
Domain cluster:
representative
CATH (2)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1reqB01 | 3.20.20.240 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Methylmalonyl-CoA mutase | 0.55 | 44.0 | 2.68e-01 | 91.7% | 54.2% |
| 4l9pA00 | 1.25.40.120 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Protein prenylyltransferase | 0.50 | 43.0 | 2.71e-01 | 100.0% | 32.8% |
D2
high
residues 81-151
Domain cluster:
representative
CATH (4)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 5nohA00 | 1.20.120.1350 | Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Pneumovirus matrix protein 2 (M2), zinc-binding domain | 0.57 | 40.0 | 3.56e-01 | 97.2% | 49.5% |
| 2of5H00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.52 | 38.0 | 3.42e-01 | 87.3% | 56.0% |
| 3rf7A02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.51 | 41.0 | 3.29e-01 | 95.8% | 93.6% |
| 1x5bA01 | 1.25.40.90 | Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › | 0.50 | 43.0 | 3.47e-01 | 94.4% | 68.1% |
ECOD (2)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4382041 | 7014.1.1.1 ↗ | alpha bundles › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › Undecaprenyl pyrophosphate phosphatase (UppP) transmembrane domain › BacA | 0.68 | 47.0 | 4.95e-01 | 84.5% | 80.0% |
| 4327631 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.59 | 44.0 | 4.16e-01 | 100.0% | 65.9% |
D3
high
residues 167-344
Domain cluster:
representative
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF17289.9 best | Terminase_6C | 23.9 | 4.90e-05 | 88.8% | 92.3% |
CATH (20)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1nmnA00 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.74 | 50.0 | 6.00e-01 | 93.3% | 100.0% |
| 3psfA04 | 3.30.420.140 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › YqgF/RNase H-like domain | 0.71 | 55.0 | 5.78e-01 | 93.8% | 88.4% |
| 3htvA02 | 3.30.420.40 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › ATPase, nucleotide binding domain | 0.63 | 48.0 | 4.93e-01 | 77.0% | 98.2% |
| 1f2dA02 | 3.40.50.1100 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › | 0.62 | 31.0 | 4.00e-01 | 94.4% | 83.3% |
| 4e19A00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.61 | 43.0 | 4.91e-01 | 88.2% | 95.5% |
| 6gp1A00 | 3.30.1300.40 | Alpha Beta › 2-Layer Sandwich › Pantoate--beta-alanine Ligase; Chain: A,domain 2 › | 0.61 | 21.0 | 3.45e-01 | 87.6% | 84.6% |
| 3kk7A01 | 3.30.420.400 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › | 0.55 | 31.0 | 3.86e-01 | 73.6% | 89.0% |
| 2ehgA00 | 3.30.420.10 | Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H | 0.55 | 40.0 | 4.38e-01 | 83.1% | 91.3% |
| 4fx9A03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.54 | 33.0 | 4.00e-01 | 100.0% | 92.9% |
| 3luaA00 | 3.40.50.2300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Response regulator | 0.54 | 36.0 | 4.13e-01 | 96.1% | 94.4% |
| 7by3B01 | 3.40.50.1010 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 5'-nuclease | 0.54 | 31.0 | 3.71e-01 | 91.6% | 85.1% |
| 2o0jA02 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 41.0 | 3.61e-01 | 77.5% | 64.2% |
| 1vc1A00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.53 | 33.0 | 4.05e-01 | 86.5% | 99.1% |
| 4qtpD00 | 3.30.750.24 | Alpha Beta › 2-Layer Sandwich › Transcription Regulator spoIIAA › STAS domain | 0.53 | 33.0 | 4.00e-01 | 87.6% | 97.4% |
| 4ijrA00 | 3.20.20.100 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › NADP-dependent oxidoreductase domain | 0.52 | 44.0 | 3.61e-01 | 89.3% | 99.1% |
| 6ecpB01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.52 | 33.0 | 3.64e-01 | 96.1% | 77.9% |
| 4aeeA03 | 3.20.20.80 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Glycosidases | 0.51 | 38.0 | 3.12e-01 | 76.4% | 82.4% |
| 4ovxA00 | 3.20.20.150 | Alpha Beta › Alpha-Beta Barrel › TIM Barrel › Divalent-metal-dependent TIM barrel enzymes | 0.51 | 39.0 | 3.39e-01 | 78.1% | 88.9% |
| 3wxmB03 | 3.30.1330.30 | Alpha Beta › 2-Layer Sandwich › 60s Ribosomal Protein L30; Chain: A; › Ribosomal protein L30/S12 | 0.51 | 27.0 | 3.36e-01 | 88.2% | 82.2% |
| 6de8A01 | 3.40.50.10860 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Leucine Dehydrogenase, chain A, domain 1 | 0.50 | 34.0 | 3.67e-01 | 96.6% | 81.6% |
ECOD (41)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4974990 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.86 | 76.0 | 7.72e-01 | 100.0% | 93.7% |
| 5002634 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.82 | 75.0 | 7.56e-01 | 99.4% | 94.4% |
| 3944867 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.82 | 78.0 | 7.24e-01 | 100.0% | 95.3% |
| 5080207 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.82 | 78.0 | 7.44e-01 | 100.0% | 94.5% |
| 3942673 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.77 | 71.0 | 6.98e-01 | 100.0% | 91.6% |
| 4954544 | 2484.1.1.77 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Terminase_6C | 0.74 | 70.0 | 6.82e-01 | 99.4% | 93.2% |
| 3597605 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.73 | 56.0 | 5.73e-01 | 93.8% | 82.9% |
| 4403202 | 2484.1.1.72 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › YqgF | 0.72 | 56.0 | 5.65e-01 | 93.8% | 81.1% |
| 3166064 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.72 | 67.0 | 6.22e-01 | 99.4% | 95.0% |
| 3420880 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.67 | 55.0 | 3.97e-01 | 86.0% | 89.3% |
| 4889657 | 7516.1.1.37 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › CHGN | 0.64 | 34.0 | 3.38e-01 | 94.9% | 47.6% |
| 3453242 | 192.18.1.0 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like | 0.62 | 55.0 | 3.92e-01 | 94.9% | 96.7% |
| 3467280 | 101.1.1.0 ↗ | alpha arrays › HTH › HTH › Three-helical HTH | 0.62 | 54.0 | 3.80e-01 | 92.7% | 93.1% |
| 5075022 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.61 | 43.0 | 4.91e-01 | 86.5% | 96.9% |
| 3482921 | 2484.1.1.170 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › ZSWIM1-3_RNaseH-like | 0.61 | 43.0 | 4.50e-01 | 89.9% | 77.6% |
| 5041220 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.61 | 43.0 | 4.85e-01 | 87.6% | 94.8% |
| 3467205 | 192.18.1.0 ↗ | alpha bundles › Long alpha-hairpin › MxiH-like › MxiH-like | 0.60 | 53.0 | 3.87e-01 | 94.4% | 100.0% |
| 3672945 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 51.0 | 4.66e-01 | 93.3% | 100.0% |
| None | — | 0.58 | 54.0 | 4.09e-01 | 100.0% | 84.1% | |
| 3211133 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.58 | 43.0 | 4.45e-01 | 87.1% | 82.4% |
| 3651277 | 2484.1.1.67 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RVT_3 | 0.57 | 48.0 | 5.01e-01 | 92.1% | 96.9% |
| 3237572 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.57 | 43.0 | 4.54e-01 | 87.1% | 89.0% |
| 3781675 | 2007.2.5.1 ↗ | a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › Rhodanese/Cell cycle control phosphatase › Rhodanese | 0.56 | 39.0 | 4.25e-01 | 79.2% | 85.5% |
| 3504007 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.56 | 49.0 | 4.60e-01 | 94.4% | 82.3% |
| 3775033 | 3164.1.1.0 ↗ | few secondary structure elements › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein › Zinc-binding domain in Junin virus envelope glycoprotein | 0.55 | 47.0 | 4.43e-01 | 89.9% | 86.2% |
| 3482477 | 2484.1.1.4 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › RNase_H | 0.55 | 43.0 | 4.63e-01 | 87.6% | 95.3% |
| None | — | 0.55 | 47.0 | 4.12e-01 | 92.1% | 87.2% | |
| 4534723 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.54 | 47.0 | 4.87e-01 | 97.2% | 99.4% |
| 3457030 | 2484.1.1.106 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DUF659 | 0.54 | 46.0 | 4.46e-01 | 89.9% | 85.0% |
| None | — | 0.54 | 46.0 | 3.95e-01 | 91.6% | 82.1% | |
| 3702647 | 4156.1.1.0 ↗ | alpha arrays › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like › Sec63 N-terminal subdomain-like | 0.53 | 38.0 | 2.60e-01 | 70.8% | 61.8% |
| 1122728 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.53 | 44.0 | 3.62e-01 | 88.8% | 98.2% |
| 5021851 | 2484.1.1.18 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › DDE_Tnp_1 | 0.53 | 48.0 | 3.81e-01 | 97.2% | 91.3% |
| 3217119 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.52 | 47.0 | 3.87e-01 | 97.8% | 76.6% |
| 3788533 | 2002.1.1.13 ↗ | a/b barrels › TIM beta/alpha-barrel › TIM barrels › TIM barrels › Aldo_ket_red | 0.52 | 43.0 | 3.49e-01 | 87.6% | 94.8% |
| 4643206 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.51 | 45.0 | 4.51e-01 | 98.9% | 93.3% |
| 4958656 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.51 | 46.0 | 3.90e-01 | 98.9% | 81.4% |
| 3202677 | 2004.1.1.29 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DEAD | 0.51 | 37.0 | 3.54e-01 | 75.3% | 82.9% |
| 3343109 | 2484.1.1.0 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like | 0.50 | 45.0 | 3.89e-01 | 98.3% | 86.0% |
| 2487429 | 7516.1.1.1 ↗ | a/b three-layered sandwiches › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › Nucleotide-diphospho-sugar transferases › NTP_transferase | 0.50 | 40.0 | 4.03e-01 | 84.3% | 97.3% |
| 4429421 | 2484.1.1.199 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › Transposase_mut | 0.50 | 45.0 | 3.86e-01 | 100.0% | 79.0% |