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MW478292.1__QTZ83012.1__phiCPE_00036__00036
Bact-VirMW478292.1__QTZ83012.1__phiCPE_00036__00036
Identity
- Accession:
- MW478292 ↗
- Kingdom:
- phage
Quality
70.1
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 22-105
Domain cluster:
rep: IMGVR_UViG_3300021513_000102-3300021513-Ga0190315_10005481__D86-160
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF13730.13 best | HTH_36 | 31.5 | 1.70e-07 | 65.5% | 98.2% |
D2
high
residues 178-237
Domain cluster:
representative
CATH (19)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3rc3A01 | 1.10.1740.140 | Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › | 0.76 | 59.0 | 4.95e-01 | 85.0% | 75.7% |
| 1r6bX03 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.68 | 57.0 | 5.14e-01 | 100.0% | 85.2% |
| 3s6jE02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.66 | 45.0 | 4.29e-01 | 91.7% | 60.9% |
| 7swlB02 | 1.10.8.60 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › | 0.66 | 55.0 | 4.77e-01 | 100.0% | 95.1% |
| 2o71A00 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.62 | 43.0 | 3.75e-01 | 71.7% | 48.4% |
| 4ojmX02 | 1.10.240.10 | Mainly Alpha › Orthogonal Bundle › Tyrosyl-Transfer RNA Synthetase › Tyrosyl-Transfer RNA Synthetase | 0.62 | 42.0 | 3.48e-01 | 75.0% | 40.0% |
| 2oznB01 | 1.20.1270.90 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › AF1782-like | 0.61 | 42.0 | 3.83e-01 | 71.7% | 91.3% |
| 3solA00 | 1.20.58.1630 | Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Chaperone lipoprotein PulS/OutS | 0.61 | 47.0 | 4.16e-01 | 86.7% | 97.8% |
| 2yguC00 | 1.10.238.190 | Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › | 0.60 | 48.0 | 3.97e-01 | 91.7% | 50.0% |
| 1cukA03 | 1.10.8.10 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain | 0.60 | 43.0 | 4.55e-01 | 88.3% | 100.0% |
| 4ye6A01 | 1.10.8.1290 | Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Glutaminyl-tRNA synthetase, non-specific RNA binding region part 1, domain 1 | 0.59 | 49.0 | 4.27e-01 | 100.0% | 73.1% |
| 4qdnA00 | 1.10.530.10 | Mainly Alpha › Orthogonal Bundle › Lysozyme › | 0.59 | 48.0 | 3.97e-01 | 95.0% | 62.7% |
| 1w36C04 | 1.10.486.10 | Mainly Alpha › Orthogonal Bundle › PCRA; domain 4 › PCRA; domain 4 | 0.58 | 43.0 | 3.10e-01 | 83.3% | 29.7% |
| 2znmD00 | 3.40.30.10 | Alpha Beta › 3-Layer(aba) Sandwich › Glutaredoxin › Glutaredoxin | 0.58 | 48.0 | 3.55e-01 | 100.0% | 50.5% |
| 1grlB01 | 1.10.560.10 | Mainly Alpha › Orthogonal Bundle › GROEL; domain 1 › GroEL-like equatorial domain | 0.55 | 46.0 | 3.17e-01 | 100.0% | 31.6% |
| 2bbrA01 | 1.10.533.10 | Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas | 0.54 | 38.0 | 3.48e-01 | 78.3% | 67.4% |
| 3ed5A02 | 1.10.150.240 | Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2 | 0.54 | 46.0 | 4.17e-01 | 100.0% | 73.8% |
| 5tkyA05 | 1.20.1270.10 | Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › | 0.51 | 36.0 | 3.21e-01 | 73.3% | 55.2% |
| 4fcgA00 | 3.80.10.10 | Alpha Beta › Alpha-Beta Horseshoe › Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) › Ribonuclease Inhibitor | 0.50 | 39.0 | 2.56e-01 | 86.7% | 36.1% |
ECOD (16)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 3468824 | 3938.1.1.3 ↗ | alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › PF26252 | 0.80 | 72.0 | 4.72e-01 | 100.0% | 28.3% |
| 3665833 | 3938.1.1.2 ↗ | alpha arrays › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › Heterogeneous nuclear ribonucleoprotein Q acidic domain › PF26249 | 0.77 | 68.0 | 6.35e-01 | 100.0% | 84.0% |
| 3276922 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.73 | 57.0 | 5.96e-01 | 90.0% | 92.7% |
| 3802239 | 103.1.1.0 ↗ | alpha arrays › RuvA-C › RuvA-C, UBA, CRAL/TRIO-N, HBS1 › UBA-like domain | 0.65 | 50.0 | 5.44e-01 | 90.0% | 100.0% |
| 3930506 | 170.1.1.0 ↗ | alpha bundles › Retrovirus capsid protein › Retrovirus capsid protein-C › Retrovirus capsid protein-C | 0.64 | 45.0 | 4.53e-01 | 76.7% | 75.0% |
| 4872437 | 2005.1.1.5 ↗ | a/b three-layered sandwiches › HUP domain-like › HUP domains › HUP domains › tRNA-synt_1c | 0.62 | 43.0 | 3.60e-01 | 73.3% | 43.0% |
| 3228717 | 103.4.1.1 ↗ | alpha arrays › RuvA-C › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › Elongation factor TFIIS domain 2/ Kix domain of creb binding protein › KIX | 0.61 | 48.0 | 4.56e-01 | 90.0% | 90.7% |
| 4359328 | 142.1.1.44 ↗ | alpha complex topology › Sigma2 domain-like › Sigma2 domain of RNA polymerase sigma factors › Sigma2 domain of RNA polymerase sigma factors › GerPC | 0.60 | 47.0 | 4.01e-01 | 85.0% | 84.0% |
| 4993912 | 102.1.1.11 ↗ | alpha arrays › HhH/H2TH › SAM/DNA-glycosylase › SAM domain-like › RNA_pol_Rpb4 | 0.56 | 37.0 | 3.55e-01 | 95.0% | 58.6% |
| 3634546 | 632.15.1.0 ↗ | alpha bundles › immunoglobulin/albumin-binding domain-like › Staphylococcal complement inhibitor (SCIN) › Staphylococcal complement inhibitor (SCIN) | 0.56 | 38.0 | 3.60e-01 | 71.7% | 86.7% |
| 4569135 | 192.29.1.274 ↗ | alpha bundles › Long alpha-hairpin › bMERB domain (bivalent Mical/EHBP Rab binding) › bMERB domain (bivalent Mical/EHBP Rab binding) › NifW | 0.56 | 46.0 | 4.18e-01 | 96.7% | 77.6% |
| 3989928 | 148.1.3.197 ↗ | alpha arrays › Histone-like › Histone-related › AAA+ ATPase lid domain › Transgly_assoc | 0.55 | 45.0 | 4.26e-01 | 93.3% | 90.7% |
| 5043629 | 601.7.1.34 ↗ | alpha bundles › Four-helical up-and-down bundle › HEPN › Nucleotidyltransferase substrate binding subunit/domain › DUF4129 | 0.55 | 38.0 | 3.49e-01 | 73.3% | 97.6% |
| 3726746 | 3755.4.1.0 ↗ | alpha bundles › YscO-like › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain › Phosphatidylinositol 3-kinase regulatory subunit inter-SH2 domain | 0.55 | 46.0 | 3.60e-01 | 98.3% | 96.6% |
| 4014978 | 101.1.2.0 ↗ | alpha arrays › HTH › HTH › winged helix domain | 0.53 | 37.0 | 3.26e-01 | 73.3% | 85.6% |
| 3542655 | 385.1.1.20 ↗ | few secondary structure elements › Cystine-knot cytokines › Cystine-knot cytokines › Cystine-knot cytokines › AMH_N | 0.51 | 35.0 | 3.16e-01 | 73.3% | 70.0% |