←Back to structures

MW507126.1QRI45091.1SEA_SHOCKER_37__00037

Bact-Vir

MW507126.1__QRI45091.1__SEA_SHOCKER_37__00037

Identity

Accession:: MW507126 ↗
Kingdom:: phage

Quality

53.9 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Shockervirus› Microbacterium_phage_Shocker

TaxID: 2805839

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 1309-1510

PDB

Domain cluster: representative

CATH (10)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3n2oA03	1.20.58.930	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.56	26.0	3.54e-01	85.1%	85.4%
1c02A00	1.20.120.160	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › HPT domain	0.56	34.0	3.74e-01	84.7%	71.1%
4jxtA00	1.25.40.90	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat ›	0.54	24.0	2.98e-01	93.6%	61.5%
6i57A00	1.25.40.10	Mainly Alpha › Alpha Horseshoe › Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat › Tetratricopeptide repeat domain	0.54	19.0	2.35e-01	75.7%	45.6%
2l1lB00	1.20.1440.250	Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) ›	0.52	25.0	3.13e-01	95.5%	70.9%
1u7gA00	1.10.3430.10	Mainly Alpha › Orthogonal Bundle › Ammonium transporter fold › Ammonium transporter AmtB like domains	0.52	37.0	2.97e-01	87.6%	37.3%
2eh3A02	1.10.357.10	Mainly Alpha › Orthogonal Bundle › Tetracycline Repressor; domain 2 › Tetracycline Repressor, domain 2	0.52	27.0	3.49e-01	84.7%	83.6%
3bjdA01	1.10.1240.20	Mainly Alpha › Orthogonal Bundle › Methyltransferase, Methionine Synthase (B12-binding Domains); Chain A, domain 1 › Lytic transglycosylase, superhelical linker domain	0.51	24.0	3.53e-01	75.2%	100.0%
1v9mA01	1.10.132.50	Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › ATP synthase (C/AC39) subunit, domain 3	0.51	27.0	3.44e-01	78.7%	87.8%
5gl7A01	1.10.730.10	Mainly Alpha › Orthogonal Bundle › Isoleucyl-tRNA Synthetase; Domain 1 › Isoleucyl-tRNA Synthetase; Domain 1	0.50	27.0	2.96e-01	77.7%	60.2%

ECOD (4)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
4961217	109.4.1.0 ↗	alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat	0.57	38.0	3.97e-01	80.2%	70.8%
4932794	1203.1.2.0 ↗	alpha bundles › Shroom domain 2 › Shroom domain 2 › Human SD2	0.54	39.0	3.89e-01	81.2%	70.0%
5018613	5051.1.1.5 ↗	alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Na_Ala_symp	0.51	41.0	3.15e-01	100.0%	37.4%
5018481	2004.1.1.136 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › DUF927	0.50	38.0	3.37e-01	77.2%	91.2%

D2 medium residues 43-216

PDB

D3 medium residues 608-719

PDB

D4 medium residues 834-916_969-983_1013-1029_1046-1078

PDB

D5 medium residues 1079-1162

PDB

D6 medium residues 1163-1243

PDB

Domain cluster: representative

CATH (21)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3dteA02	1.10.10.1030	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › IrrE, HTH domain	0.79	28.0	3.94e-01	84.0%	63.4%
1cukA03	1.10.8.10	Mainly Alpha › Orthogonal Bundle › Helicase, Ruva Protein; domain 3 › Ubiquitin-associated (UBA) domain	0.66	34.0	4.17e-01	91.4%	81.2%
2o38A01	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.66	40.0	4.40e-01	87.7%	75.4%
4jd9G00	1.10.238.20	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › Pheromone/general odorant binding protein domain	0.64	55.0	4.92e-01	100.0%	85.8%
3ezqA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.64	54.0	4.82e-01	100.0%	66.1%
2dbdA00	1.10.533.10	Mainly Alpha › Orthogonal Bundle › Death Domain, Fas › Death Domain, Fas	0.63	50.0	4.60e-01	96.3%	66.4%
6fgjA01	3.30.460.10	Alpha Beta › 2-Layer Sandwich › Beta Polymerase; domain 2 › Beta Polymerase, domain 2	0.62	49.0	4.03e-01	86.4%	87.3%
3bs3A00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.59	37.0	4.16e-01	95.1%	85.0%
7pbkA01	3.30.420.10	Alpha Beta › 2-Layer Sandwich › Nucleotidyltransferase; domain 5 › Ribonuclease H-like superfamily/Ribonuclease H	0.57	49.0	3.66e-01	100.0%	90.1%
2p1aB01	1.20.120.450	Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › dinb family like domain	0.53	46.0	3.79e-01	95.1%	87.0%
3a06B03	1.10.1740.10	Mainly Alpha › Orthogonal Bundle › Rna Polymerase Sigma Factor; Chain: A › RNA polymerase sigma factor, region 2, helix turn helix motif	0.53	36.0	3.56e-01	70.4%	65.9%
1s8nA02	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	34.0	3.92e-01	82.7%	93.1%
2pjqA01	1.10.472.50	Mainly Alpha › Orthogonal Bundle › Cyclin A; domain 1 › HD-domain/PDEase-like	0.52	40.0	3.96e-01	86.4%	83.1%
2ewtA00	1.10.260.40	Mainly Alpha › Orthogonal Bundle › 434 Repressor (Amino-terminal Domain) › lambda repressor-like DNA-binding domains	0.52	35.0	3.67e-01	92.6%	78.9%
1te2A02	1.10.150.240	Mainly Alpha › Orthogonal Bundle › DNA polymerase; domain 1 › Putative phosphatase; domain 2	0.52	39.0	4.06e-01	87.7%	93.1%
6ynwH01	1.20.20.10	Mainly Alpha › Up-down Bundle › F1FO ATP Synthase › F1F0 ATP synthase subunit C	0.51	32.0	3.41e-01	87.7%	70.3%
2i0mA01	1.20.58.220	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › Phosphate transport system protein phou homolog 2; domain 2	0.51	32.0	2.95e-01	86.4%	49.1%
4hr1A00	1.20.1270.410	Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 ›	0.51	42.0	3.77e-01	93.8%	98.3%
2q6fB03	1.10.1840.10	Mainly Alpha › Orthogonal Bundle › main proteinase (3clpro) structure, domain 3 › main proteinase (3clpro) structure, domain 3	0.51	35.0	3.36e-01	72.8%	71.0%
2be4A02	1.10.238.10	Mainly Alpha › Orthogonal Bundle › Recoverin; domain 1 › EF-hand	0.50	36.0	3.38e-01	75.3%	73.3%
1ou0A00	3.40.50.10230	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cobalamin biosynthesis CobH/CbiC, precorrin-8X methylmutase	0.50	40.0	3.17e-01	91.4%	66.8%

ECOD (8)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3588243	101.1.4.3 ↗	alpha arrays › HTH › HTH › tetra-helical, lambda repressor-like › HTH_3	0.58	38.0	4.28e-01	90.1%	91.7%
3388500	108.1.1.18 ↗	alpha arrays › EF-hand › EF-hand-related › EF-hand › EF-hand_2	0.58	40.0	3.41e-01	72.8%	61.4%
4937570	101.1.2.0 ↗	alpha arrays › HTH › HTH › winged helix domain	0.57	40.0	3.71e-01	74.1%	66.7%
3507722	110.1.1.0 ↗	alpha arrays › DEATH domain › DEATH domain › DEATH domain	0.56	46.0	4.40e-01	92.6%	78.9%
3781737	192.4.1.23 ↗	alpha bundles › Long alpha-hairpin › Ribosomal protein L29 (L29p) › Ribosomal protein L29 (L29p) › DUF3818	0.56	33.0	2.83e-01	74.1%	35.6%
5059036	101.1.2.892 ↗	alpha arrays › HTH › HTH › winged helix domain › ArsR	0.55	28.0	3.00e-01	77.8%	54.3%
3958289	2004.1.1.0 ↗	a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases	0.51	43.0	2.72e-01	91.4%	17.6%
2674763	5041.1.1.1 ↗	extended segments › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › F1F0 ATP synthase subunit C › ATP-synt_C	0.51	32.0	3.37e-01	87.7%	69.3%

D7 medium residues 1244-1307

PDB

D8 medium residues 1511-1585_1611-1635

PDB

Domain cluster: representative

CATH (3)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1hciA03	1.20.58.60	Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 ›	0.55	33.0	3.10e-01	94.0%	48.3%
2gsqA02	1.20.1050.10	Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 ›	0.53	31.0	3.03e-01	86.0%	51.9%
7qaqA01	3.40.50.11710	Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Cyclodipeptide synthase	0.53	36.0	2.83e-01	88.0%	32.4%

ECOD (3)

UID	F-ID	Classification	TM-score	Bits	E-value	Q cov	T cov
3920506	3684.1.1.0 ↗	alpha complex topology › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like › PSPTO4464 C-terminal domain-like	0.56	33.0	2.86e-01	93.0%	37.4%
3181110	5086.1.1.110 ↗	alpha bundles › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › helical hairpin of HlyD-like secretion proteins › HisKA	0.54	31.0	3.21e-01	94.0%	58.9%
3177141	6155.1.1.2 ↗	alpha duplicates or obligate multimers › TOG superfamily › SWEET transporter › SWEET transporter › PQ-loop	0.52	31.0	3.17e-01	93.0%	60.0%

D9 medium residues 1636-1695

PDB

Domain cluster: representative

CATH (1)

Domain ID	Class ID	Classification	TM-score	Bits	E-value	Q cov	T cov
1fc3B00	1.10.10.10	Mainly Alpha › Orthogonal Bundle › Arc Repressor Mutant, subunit A › Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain	0.52	43.0	3.79e-01	100.0%	83.2%