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MW514246.1__QSL99440.1__CRP9_gp25__00025

Bact-Vir

MW514246.1__QSL99440.1__CRP9_gp25__00025

Identity

Accession:
MW514246 ↗
Kingdom:
phage

Quality

73.2 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Roseobacter_phage_CRP-9

TaxID: 2813174

Cluster

View cluster (69 members)

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 3-134
PDB
Domain cluster: rep: HQ332139.1__AGF91556.1__PRRG_00047__00045__D4-148
CATH (19)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1je5A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.79 74.0 6.56e-01 100.0% 92.3%
4jg2A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.75 71.0 6.20e-01 100.0% 82.7%
8aasC01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.72 38.0 4.32e-01 100.0% 66.7%
3njaA02 2.10.70.100 Mainly Beta › Ribbon › Complement Module; domain 1 › 0.70 26.0 4.30e-01 100.0% 97.8%
1z9fA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.69 44.0 5.23e-01 100.0% 95.5%
4gs3A00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.66 44.0 5.15e-01 100.0% 97.8%
4pqxA01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.65 36.0 4.85e-01 97.7% 100.0%
3f2bA01 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.64 41.0 4.75e-01 100.0% 89.6%
2kx2A00 3.30.780.30 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor Eif1 › 0.63 41.0 4.72e-01 80.3% 89.6%
1ue6D00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 45.0 5.02e-01 100.0% 94.2%
1v1qA00 2.40.50.140 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Nucleic acid-binding proteins 0.62 46.0 4.97e-01 100.0% 90.9%
3qwnD01 2.40.50.500 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NigD-like N-terminal OB domain 0.59 32.0 4.19e-01 97.7% 98.6%
2z4hA02 2.40.50.540 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › NlpE, C-terminal domain 0.59 36.0 4.30e-01 99.2% 93.0%
4c92C00 2.30.30.100 Mainly Beta › Roll › SH3 type barrels. › 0.58 27.0 3.45e-01 99.2% 74.7%
2cveA02 3.30.70.240 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › 0.55 28.0 3.87e-01 76.5% 98.5%
2wkcB00 2.40.50.400 Mainly Beta › Beta Barrel › OB fold (Dihydrolipoamide Acetyltransferase, E2P) › Lactococcus phage single-stranded DNA binding protein 0.54 36.0 4.23e-01 100.0% 98.9%
1js3A03 3.90.1150.10 Alpha Beta › Alpha-Beta Complex › Aspartate Aminotransferase, domain 1 › Aspartate Aminotransferase, domain 1 0.53 32.0 3.60e-01 90.9% 78.4%
4x2oA00 3.10.450.50 Alpha Beta › Roll › Nuclear Transport Factor 2; Chain: A, › 0.52 36.0 3.28e-01 70.5% 93.3%
5mmjh01 3.30.1370.30 Alpha Beta › 2-Layer Sandwich › Ribosomal Protein S8; Chain: A, domain 1 › 0.52 29.0 3.64e-01 93.2% 94.7%
ECOD (32)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
379 2.1.1.108 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › SBB_T7 0.79 74.0 6.56e-01 100.0% 92.3%
235847 2.1.1.53 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Enc34_ssDNA-bd 0.75 71.0 6.36e-01 100.0% 88.4%
2132736 2.1.1.53 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Enc34_ssDNA-bd 0.73 70.0 6.18e-01 100.0% 81.6%
5081146 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.73 42.0 5.04e-01 100.0% 84.3%
4240090 2.1.1.127 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti_2 0.72 44.0 5.04e-01 100.0% 81.0%
3173045 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 50.0 4.69e-01 100.0% 62.6%
3726706 2.1.1.43 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Rep_fac-A_3 0.69 37.0 3.91e-01 100.0% 57.5%
3276150 2.1.1.52 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › Stn1 0.69 45.0 4.29e-01 100.0% 57.3%
4600925 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.69 43.0 4.97e-01 99.2% 86.3%
4025310 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.69 43.0 4.41e-01 100.0% 63.8%
4958887 304.163.1.0 ↗ a+b two layers › Alpha-beta plaits › ATP-binding protein TM_1403 insertion domain › ATP-binding protein TM_1403 insertion domain 0.67 25.0 3.93e-01 74.2% 88.0%
4308192 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.66 43.0 4.07e-01 100.0% 55.5%
4950307 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 38.0 4.73e-01 99.2% 93.8%
4324819 4970.1.1.3 ↗ alpha bundles › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › fingers domain in bacteriophage RB69-like DNA polymerase I › DNA_pol_B_2 0.66 26.0 3.32e-01 81.1% 58.7%
4600598 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.66 42.0 4.54e-01 100.0% 74.8%
4141727 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 42.0 4.71e-01 99.2% 81.9%
4458313 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.65 42.0 4.63e-01 100.0% 81.0%
4975146 2.1.1.15 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein › tRNA_anti-codon 0.64 43.0 4.34e-01 100.0% 67.4%
5007515 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.64 45.0 4.00e-01 100.0% 51.9%
143130 306.3.1.3 ↗ a+b two layers › Glucose permease domain IIB-like › eIF1-like › eIF1-like › DUF5750 0.63 41.0 4.72e-01 80.3% 89.6%
3795495 243.3.1.1 ↗ a+b two layers › Cystatin-like › Cystatin/monellin › Cystatin/monellin › Cystatin 0.60 29.0 3.06e-01 100.0% 50.8%
3700345 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 42.0 4.54e-01 100.0% 89.1%
3593783 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.58 43.0 4.73e-01 100.0% 96.2%
3964606 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.57 52.0 4.77e-01 99.2% 77.1%
5010745 3781.2.1.1 ↗ a+b two layers › Ribosomal protein L11/L12e N-terminal domain-like › ssDNA-binding protein ThermoDBP-related › ssDNA-binding protein ThermoDBP-related › ThermoDBP-RP_arch 0.57 37.0 3.88e-01 99.2% 72.5%
5017463 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.55 40.0 4.23e-01 100.0% 82.5%
5068234 259.1.1.0 ↗ a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain 0.54 35.0 4.11e-01 96.2% 97.8%
4982874 2.1.1.0 ↗ beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 41.0 4.26e-01 100.0% 86.4%
3778873 206.1.3.46 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp › ATP-grasp_IQCH 0.52 36.0 2.87e-01 100.0% 36.2%
3594714 259.1.1.0 ↗ a+b two layers › Ribosomal protein L31e-like › Ribosomal protein L31e/gp120 outer domain › Ribosomal protein L31e/gp120 outer domain 0.52 36.0 3.87e-01 97.7% 85.3%
3499000 206.1.3.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › ATP-grasp 0.51 35.0 2.70e-01 100.0% 31.9%
3669917 243.1.1.50 ↗ a+b two layers › Cystatin-like › NTF2-like › NTF2-like › LIM_bind 0.50 38.0 3.12e-01 79.5% 78.0%