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MW514246.1__QSL99442.1__CRP9_gp27__00027
Bact-VirMW514246.1__QSL99442.1__CRP9_gp27__00027
Identity
- Accession:
- MW514246 ↗
- Kingdom:
- phage
Quality
93.7
mean pLDDT
Cluster
Singleton — not in a non-trivial cluster
3D Structure
Domains
high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.
D1
high
residues 5-59
Domain cluster:
representative
CATH (17)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 1i1jB00 | 2.30.30.40 | Mainly Beta › Roll › SH3 type barrels. › SH3 Domains | 0.65 | 44.0 | 3.63e-01 | 98.2% | 37.5% |
| 7c38B01 | 2.120.10.70 | Mainly Beta › 6 Propeller › Neuraminidase › Fucose-specific lectin | 0.61 | 38.0 | 2.37e-01 | 98.2% | 10.4% |
| 2f4mA02 | 2.20.25.10 | Mainly Beta › Single Sheet › N-terminal domain of TfIIb › | 0.61 | 42.0 | 4.39e-01 | 100.0% | 84.0% |
| 3ptaA04 | 2.30.30.490 | Mainly Beta › Roll › SH3 type barrels. › Bromo adjacent homology (BAH) domain | 0.60 | 49.0 | 3.51e-01 | 100.0% | 47.8% |
| 2pziB02 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.59 | 51.0 | 3.78e-01 | 98.2% | 54.5% |
| 4by6B00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.56 | 40.0 | 3.00e-01 | 98.2% | 27.1% |
| 1iz6A01 | 2.30.30.30 | Mainly Beta › Roll › SH3 type barrels. › | 0.54 | 36.0 | 3.47e-01 | 96.4% | 56.5% |
| 4c0fC00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.54 | 38.0 | 3.20e-01 | 98.2% | 39.3% |
| 1n9pA00 | 2.60.40.1400 | Mainly Beta › Sandwich › Immunoglobulin-like › G protein-activated inward rectifier potassium channel 1 | 0.54 | 45.0 | 3.10e-01 | 94.5% | 40.6% |
| 4blqA00 | 3.40.50.300 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › P-loop containing nucleotide triphosphate hydrolases | 0.54 | 36.0 | 2.42e-01 | 100.0% | 14.6% |
| 4c0dB00 | 2.30.30.1020 | Mainly Beta › Roll › SH3 type barrels. › CCR4-NOT complex subunit 2/3/5, C-terminal domain | 0.53 | 38.0 | 2.76e-01 | 98.2% | 23.6% |
| 3jb9H00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.53 | 36.0 | 3.36e-01 | 98.2% | 53.9% |
| 4f7uG00 | 2.30.30.100 | Mainly Beta › Roll › SH3 type barrels. › | 0.52 | 36.0 | 3.50e-01 | 98.2% | 61.8% |
| 1ni9A01 | 3.30.540.10 | Alpha Beta › 2-Layer Sandwich › Fructose-1,6-Bisphosphatase; Chain A, domain 1 › Fructose-1,6-Bisphosphatase, subunit A, domain 1 | 0.52 | 42.0 | 3.22e-01 | 100.0% | 94.7% |
| 3l3bA00 | 3.40.50.880 | Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › Class I glutamine amidotransferase (GATase) domain | 0.52 | 37.0 | 2.63e-01 | 81.8% | 89.5% |
| 2j8aA01 | 3.30.70.330 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › RRM (RNA recognition motif) domain | 0.51 | 36.0 | 3.17e-01 | 83.6% | 47.1% |
| 2cduA03 | 3.30.390.30 | Alpha Beta › 2-Layer Sandwich › Enolase-like; domain 1 › FAD/NAD-linked reductase, C-terminal dimerisation domain | 0.51 | 35.0 | 2.82e-01 | 92.7% | 35.4% |
ECOD (23)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4050543 | 3480.1.1.0 ↗ | a+b duplicates or obligate multimers › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain › Lipoprotein-associated type-17-domain | 0.64 | 47.0 | 3.95e-01 | 100.0% | 45.0% |
| 3505947 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.63 | 46.0 | 3.67e-01 | 100.0% | 36.7% |
| 3934036 | 227.1.1.0 ↗ | a+b two layers › DNA clamp › DNA clamp › DNA clamp | 0.63 | 42.0 | 3.28e-01 | 100.0% | 31.7% |
| 3846130 | 4.1.1.311 ↗ | beta barrels › SH3 › SH3 › SH3 › BRWD_AD | 0.62 | 46.0 | 3.13e-01 | 100.0% | 21.5% |
| 3853596 | 4.25.1.2 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain › BRWD_AD | 0.61 | 45.0 | 3.46e-01 | 100.0% | 33.8% |
| 3356712 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.59 | 41.0 | 4.36e-01 | 72.7% | 95.6% |
| 3833642 | 708.1.1.1 ↗ | beta complex topology › ETN0001 domain-like › ETN0001 domain-like › NAC/WRKY/GCM/WOPR domain › NAM | 0.59 | 44.0 | 3.50e-01 | 100.0% | 38.6% |
| 3646876 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.59 | 45.0 | 3.94e-01 | 90.9% | 85.3% |
| 3669027 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.58 | 38.0 | 3.58e-01 | 87.3% | 52.9% |
| 3704663 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.55 | 38.0 | 3.59e-01 | 98.2% | 57.3% |
| 5000810 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.55 | 38.0 | 3.40e-01 | 98.2% | 49.4% |
| 4015537 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.54 | 37.0 | 3.45e-01 | 98.2% | 53.8% |
| 3483729 | 277.1.1.1 ↗ | a+b two layers › PX domain › PX domain › PX domain › PX | 0.54 | 38.0 | 3.12e-01 | 100.0% | 36.7% |
| 3817267 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.53 | 40.0 | 3.50e-01 | 89.1% | 84.2% |
| 1144777 | 4.25.1.0 ↗ | beta barrels › SH3 › Auxin response factor dimerization domain and ancillary domain › Auxin response factor dimerization domain and ancillary domain | 0.53 | 41.0 | 3.53e-01 | 94.5% | 87.5% |
| 3505097 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.53 | 37.0 | 3.28e-01 | 98.2% | 48.2% |
| 3592467 | 4.1.1.0 ↗ | beta barrels › SH3 › SH3 › SH3 | 0.53 | 37.0 | 3.44e-01 | 98.2% | 57.3% |
| 3487748 | 11.1.1.0 ↗ | beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like | 0.52 | 44.0 | 4.09e-01 | 100.0% | 98.7% |
| 4932286 | 4.1.1.19 ↗ | beta barrels › SH3 › SH3 › SH3 › LSM | 0.52 | 36.0 | 3.39e-01 | 98.2% | 57.5% |
| 3252840 | 2484.1.1.9 ↗ | mixed a+b and a/b › Ribonuclease H-like › Ribonuclease H-like › Ribonuclease H-like › rve | 0.51 | 37.0 | 2.51e-01 | 98.2% | 18.4% |
| 3407633 | 2008.1.1.127 ↗ | a/b three-layered sandwiches › Restriction endonuclease-like › Restriction endonuclease-like › Restriction endonuclease-like › FAST_2+RAP | 0.51 | 37.0 | 2.92e-01 | 81.8% | 88.5% |
| 4822929 | 304.9.1.1 ↗ | a+b two layers › Alpha-beta plaits › RNA-binding domain, RBD › RNA-binding domain, RBD › RRM_1 | 0.51 | 30.0 | 3.30e-01 | 74.5% | 68.3% |
| 3391411 | 375.1.1.0 ↗ | few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related | 0.51 | 33.0 | 3.65e-01 | 90.9% | 92.5% |
D2
high
residues 64-153
Domain cluster:
rep: rifoxyd1_full_scaffold_5_prodigal-single.1__X__X__00175__D96-187
Pfam (1)
| Accession | Name | Score | E-value | Q cov | HMM cov |
|---|---|---|---|---|---|
| PF01844.30 best | HNH | 25.0 | 2.30e-05 | 63.3% | 95.7% |
CATH (13)
| Domain ID | Class ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 2qgpA00 | 1.10.30.50 | Mainly Alpha › Orthogonal Bundle › DNA Binding (I), subunit A › | 0.70 | 48.0 | 5.02e-01 | 85.6% | 77.1% |
| 1e7lA01 | 3.40.1800.10 | Alpha Beta › 3-Layer(aba) Sandwich › His-Me finger endonuclease fold › His-Me finger endonucleases | 0.65 | 48.0 | 5.02e-01 | 86.7% | 86.3% |
| 3tu3B03 | 1.20.1050.100 | Mainly Alpha › Up-down Bundle › Glutathione S-transferase Yfyf (Class Pi); Chain A, domain 2 › | 0.63 | 46.0 | 3.72e-01 | 81.1% | 40.6% |
| 6wngA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.60 | 50.0 | 3.57e-01 | 91.1% | 92.6% |
| 2ejeA00 | 3.90.1460.10 | Alpha Beta › Alpha-Beta Complex › GTF2I-like repeat › GTF2I-like | 0.60 | 47.0 | 4.42e-01 | 86.7% | 84.2% |
| 1yfmA02 | 1.20.200.10 | Mainly Alpha › Up-down Bundle › Fumarase C; Chain A, domain 2 › Fumarase/aspartase (Central domain) | 0.59 | 49.0 | 3.54e-01 | 91.1% | 93.7% |
| 1zs8A01 | 3.30.500.10 | Alpha Beta › 2-Layer Sandwich › Murine Class I Major Histocompatibility Complex, H2-DB; Chain A, domain 1 › MHC class I-like antigen recognition-like | 0.59 | 42.0 | 3.37e-01 | 87.8% | 39.2% |
| 3pfoA02 | 3.30.70.360 | Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › | 0.58 | 40.0 | 3.57e-01 | 71.1% | 65.6% |
| 2d9bA00 | 3.90.1460.10 | Alpha Beta › Alpha-Beta Complex › GTF2I-like repeat › GTF2I-like | 0.57 | 46.0 | 4.36e-01 | 87.8% | 81.7% |
| 5e6pA02 | 3.10.20.90 | Alpha Beta › Roll › Ubiquitin-like (UB roll) › Phosphatidylinositol 3-kinase Catalytic Subunit; Chain A, domain 1 | 0.53 | 36.0 | 3.50e-01 | 72.2% | 73.3% |
| 7cm3A01 | 1.10.287.70 | Mainly Alpha › Orthogonal Bundle › Helix Hairpins › | 0.52 | 40.0 | 3.31e-01 | 82.2% | 74.5% |
| 4da5A01 | 3.30.200.20 | Alpha Beta › 2-Layer Sandwich › Phosphorylase Kinase; domain 1 › Phosphorylase Kinase; domain 1 | 0.51 | 33.0 | 3.49e-01 | 77.8% | 72.3% |
| 2gruA02 | 1.20.1090.10 | Mainly Alpha › Up-down Bundle › Dehydroquinate synthase-like, alpha domain › Dehydroquinate synthase-like - alpha domain | 0.51 | 37.0 | 2.97e-01 | 78.9% | 72.1% |
ECOD (21)
| UID | F-ID | Classification | TM-score | Bits | E-value | Q cov | T cov |
|---|---|---|---|---|---|---|---|
| 4938133 | 377.1.1.0 ↗ | few secondary structure elements › Glucocorticoid receptor-like › LIM domain-like › LIM domain-like | 0.85 | 74.0 | 7.59e-01 | 92.2% | 100.0% |
| 4959591 | 378.1.1.2 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases › HNH | 0.71 | 50.0 | 5.75e-01 | 85.6% | 100.0% |
| None | — | 0.63 | 48.0 | 3.50e-01 | 82.2% | 92.8% | |
| 3269193 | 378.1.1.0 ↗ | few secondary structure elements › His-Me finger endonucleases › His-Me finger endonucleases › His-Me finger endonucleases | 0.61 | 43.0 | 3.75e-01 | 77.8% | 49.6% |
| 3748350 | 4305.1.1.1 ↗ | a+b two layers › GTF2I-like repeat › GTF2I-like repeat › GTF2I-like repeat › GTF2I | 0.60 | 49.0 | 4.66e-01 | 87.8% | 84.6% |
| 4939512 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.59 | 45.0 | 3.56e-01 | 81.1% | 66.7% |
| 3257271 | 5054.1.1.8 ↗ | alpha complex topology › Voltage-gated ion channels › Voltage-gated ion channels › Voltage-gated ion channels › Ion_trans_2 | 0.58 | 42.0 | 4.20e-01 | 75.6% | 85.3% |
| 3575349 | 602.1.1.1 ↗ | alpha arrays › L-aspartase middle domain-like › L-aspartase middle domain-like › L-aspartase middle domain-like › Lyase_1 | 0.57 | 47.0 | 3.33e-01 | 91.1% | 86.9% |
| 160849 | 4305.1.1.1 ↗ | a+b two layers › GTF2I-like repeat › GTF2I-like repeat › GTF2I-like repeat › GTF2I | 0.57 | 46.0 | 4.36e-01 | 87.8% | 81.7% |
| 3958795 | 5051.1.1.0 ↗ | alpha complex topology › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like › Sodium:neurotransmitter symporter family (SNF)-like | 0.55 | 41.0 | 2.82e-01 | 77.8% | 45.1% |
| 3242080 | 2498.1.1.5 ↗ | mixed a+b and a/b › Zincin-like › "Metalloproteases (""zincins"") catalytic domain" › "Metalloproteases (""zincins"") catalytic domain" › Peptidase_M13,Peptidase_M13_N | 0.55 | 46.0 | 2.78e-01 | 95.6% | 25.0% |
| 3499258 | 221.1.1.168 ↗ | a+b two layers › beta-Grasp › Ubiquitin-related › Ubiquitin-like › PI3K_rbd, PI3K_p85B | 0.54 | 45.0 | 3.18e-01 | 94.4% | 39.7% |
| 3760851 | 3226.1.1.3 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp | 0.54 | 47.0 | 2.93e-01 | 98.9% | 54.8% |
| 3886438 | 3226.1.1.3 ↗ | alpha complex topology › Uracil Transporter UraA › Uracil Transporter UraA › Uracil Transporter UraA › HCO3_cotransp | 0.54 | 47.0 | 2.90e-01 | 98.9% | 52.5% |
| 4077579 | 1046.1.1.1 ↗ | alpha bundles › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Lipoprotein signal peptidase › Peptidase_A8 | 0.53 | 40.0 | 3.24e-01 | 78.9% | 83.0% |
| 3635098 | 222.1.1.4 ↗ | a+b two layers › Thioesterase/thiol ester dehydrase-isomerase-like › Thioesterase/thiol ester dehydrase-isomerase › Thioesterase/thiol ester dehydrase-isomerase › 4HBT | 0.52 | 43.0 | 3.56e-01 | 88.9% | 91.8% |
| 3167073 | 4099.1.1.0 ↗ | a+b two layers › Kinetochore globular domain-like › Kinetochore globular domain-like › Kinetochore globular domain-like | 0.52 | 40.0 | 3.41e-01 | 85.6% | 99.4% |
| 3740004 | 206.1.1.83 ↗ | a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase › Pkinase, ABC1, PK_Tyr_Ser-Thr | 0.52 | 45.0 | 3.00e-01 | 97.8% | 46.9% |
| 3995178 | 1075.1.1.1 ↗ | alpha bundles › Type II ABC exporter transmembrane domain fold › Type II ABC exporter transmembrane domain-related › ABCG5/ABCG8 transmembrane domain › ABC2_membrane | 0.51 | 42.0 | 3.27e-01 | 91.1% | 94.3% |
| 4553924 | 2004.1.1.87 ↗ | a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › SMC_N | 0.50 | 44.0 | 2.97e-01 | 100.0% | 44.0% |
| 3498119 | 376.1.3.35 ↗ | few secondary structure elements › RING/U-box-like › RING/U-box-like › FYVE/PHD zinc finger › LIM | 0.50 | 35.0 | 4.03e-01 | 78.9% | 100.0% |