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MW514246.1__QSL99452.1__CRP9_gp37__00037

Bact-Vir

MW514246.1__QSL99452.1__CRP9_gp37__00037

Identity

Accession:
MW514246 ↗
Kingdom:
phage

Quality

83.7 mean pLDDT

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 5-199
PDB
Domain cluster: representative
CATH (2)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1r0dA00 1.20.1410.10 Mainly Alpha › Up-down Bundle › I/LWEQ domain › I/LWEQ domain 0.64 37.0 3.73e-01 86.2% 56.5%
1u8vB03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.55 33.0 3.20e-01 91.3% 53.1%
ECOD (1)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4457403 3922.1.1.0 alpha bundles › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 › Helical domain in structural maintenance of chromosomes protein 3 0.51 39.0 3.46e-01 76.9% 64.1%
D2 high residues 209-311
PDB
Domain cluster: representative
CATH (26)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
1rj1A00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.74 61.0 5.33e-01 87.4% 79.7%
1rx0A03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.73 62.0 5.37e-01 91.3% 89.7%
5iduC03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.71 61.0 5.22e-01 92.2% 86.2%
1x8zB00 1.20.140.40 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Invertase/pectin methylesterase inhibitor family protein 0.70 59.0 5.20e-01 90.3% 81.6%
2uxwA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.69 59.0 4.82e-01 92.2% 74.7%
3owaA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.67 55.0 4.68e-01 89.3% 88.3%
2xheA03 3.90.830.10 Alpha Beta › Alpha-Beta Complex › Syntaxin Binding Protein 1; Chain A, domain 2 › Sec1/Munc18 (SM) protein, domain 3a 0.66 41.0 3.90e-01 88.3% 52.1%
1egdA03 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.66 54.0 4.91e-01 89.3% 94.3%
2kg7B00 1.10.287.1060 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › ESAT-6-like 0.65 40.0 4.14e-01 90.3% 64.9%
4y9jA01 1.20.140.10 Mainly Alpha › Up-down Bundle › Butyryl-CoA Dehydrogenase, subunit A; domain 3 › Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.64 53.0 4.68e-01 88.3% 92.6%
2yfaA02 1.20.1440.210 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.64 54.0 5.22e-01 90.3% 99.1%
4ceiA03 6.10.250.2380 Special › Helix non-globular › Single alpha-helices involved in coiled-coils or other helix-helix interfaces › 0.62 55.0 5.38e-01 95.1% 100.0%
3tbiB02 6.10.140.1670 Special › Helix non-globular › Helix Hairpins › 0.61 43.0 4.36e-01 85.4% 74.0%
3rlfF01 1.20.58.370 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › MalF N-terminal region-like 0.59 33.0 3.57e-01 94.2% 62.8%
2ip6A00 1.20.1440.140 Mainly Alpha › Up-down Bundle › de novo design (two linked rop proteins) › 0.59 47.0 5.12e-01 92.2% 100.0%
2odmA00 1.10.287.750 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › SO2669-like 0.58 37.0 4.12e-01 95.1% 83.5%
2odvA01 1.20.58.60 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › 0.58 42.0 4.12e-01 89.3% 69.6%
3udcA01 1.10.287.1260 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.58 45.0 4.34e-01 98.1% 73.0%
2uuiA00 1.20.120.550 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › Membrane associated eicosanoid/glutathione metabolism-like domain 0.57 48.0 4.16e-01 89.3% 74.2%
1tjlA00 1.20.120.910 Mainly Alpha › Up-down Bundle › Four Helix Bundle (Hemerythrin (Met), subunit A) › DksA, coiled-coil domain 0.57 50.0 4.38e-01 92.2% 75.9%
2py6A01 1.20.1270.160 Mainly Alpha › Up-down Bundle › Substrate Binding Domain Of Dnak; Chain:A; Domain 2 › 0.57 39.0 4.51e-01 86.4% 98.6%
3teqB00 1.10.287.3550 Mainly Alpha › Orthogonal Bundle › Helix Hairpins › 0.55 46.0 4.70e-01 90.3% 93.1%
4kb2A01 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.55 44.0 4.37e-01 93.2% 81.7%
4wqoD00 1.20.1310.10 Mainly Alpha › Up-down Bundle › 5 helical Cullin repeat like › Cullin Repeats 0.53 33.0 2.98e-01 87.4% 44.0%
6xxvC00 1.10.132.20 Mainly Alpha › Orthogonal Bundle › Topoisomerase I; Chain A, domain 4 › Ribosome-recycling factor 0.53 43.0 4.25e-01 94.2% 82.0%
3q5dA02 1.20.58.420 Mainly Alpha › Up-down Bundle › Methane Monooxygenase Hydroxylase; Chain G, domain 1 › AHSP 0.53 36.0 3.77e-01 95.1% 75.3%
ECOD (23)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3287031 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.73 42.0 4.44e-01 90.3% 63.2%
3798353 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.70 58.0 5.12e-01 89.3% 92.0%
3298752 150.5.1.0 alpha bundles › Ferritin/Heme oxygenase/4-helical cytokines › ESAT-6 like › ESAT-6 like 0.69 44.0 4.27e-01 91.3% 57.4%
3621106 3755.3.1.0 alpha bundles › YscO-like › CT398 helical hairpin › CT398 helical hairpin 0.68 52.0 3.91e-01 79.6% 61.3%
3539986 5058.1.1.90 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › TMEM169 0.66 44.0 5.04e-01 82.5% 94.7%
3416038 174.1.1.0 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain 0.66 55.0 5.11e-01 90.3% 96.9%
3400732 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.65 40.0 3.87e-01 90.3% 53.3%
3757568 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.63 44.0 4.45e-01 90.3% 71.4%
3899718 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.63 38.0 3.01e-01 89.3% 29.5%
3232098 174.1.1.13 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › DUF2700 0.63 53.0 4.91e-01 91.3% 95.4%
3758972 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.62 44.0 4.31e-01 89.3% 68.2%
4965530 5058.1.1.0 alpha bundles › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region › Mechanosensitive channel protein MscS (YggB), transmembrane region 0.61 44.0 4.63e-01 100.0% 83.2%
3929285 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.61 40.0 4.10e-01 90.3% 69.0%
3265711 5038.2.1.1 alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like › MAPEG 0.60 50.0 4.40e-01 88.3% 87.2%
3574755 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.60 42.0 4.15e-01 89.3% 68.2%
3559718 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.60 42.0 4.18e-01 90.3% 69.1%
3173181 192.17.1.0 alpha bundles › Long alpha-hairpin › Rabenosyn-5 Rab-binding domain-like › Rabenosyn-5 Rab-binding domain-like 0.57 43.0 4.40e-01 83.5% 83.0%
3918068 604.1.1.1 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › Spectrin 0.57 40.0 3.90e-01 89.3% 65.2%
3718312 604.1.1.118 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat › GOSR1_N 0.57 48.0 4.22e-01 89.3% 63.4%
3628716 109.4.1.898 alpha superhelices › Repetitive alpha hairpins › ARM repeat › ARM repeat › TPR_leprecan 0.54 47.0 3.24e-01 97.1% 28.6%
3242414 174.1.1.66 few secondary structure elements › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › Tetraspanin transmembrane domain › PF29806 0.54 45.0 4.16e-01 89.3% 96.9%
3756566 604.1.1.0 alpha bundles › Spectrin repeat-like › Spectrin repeat › Spectrin repeat 0.53 46.0 3.13e-01 94.2% 69.4%
3841126 5038.2.1.0 alpha superhelices › Cytochrome c oxidase subunit I-like › MAPEG domain-like › MAPEG domain-like 0.51 41.0 3.45e-01 90.3% 67.0%
D3 high residues 338-390
PDB
Domain cluster: representative
CATH (76)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
6j7cA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.79 69.0 4.89e-01 100.0% 43.6%
4lb0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.79 68.0 4.86e-01 100.0% 43.9%
2azpA02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.78 67.0 4.85e-01 100.0% 45.2%
6r77A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.77 66.0 4.72e-01 100.0% 43.4%
1tm0A02 3.10.310.10 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › Diaminopimelate Epimerase; Chain A, domain 1 0.71 61.0 4.54e-01 100.0% 41.1%
2g6gA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.71 62.0 4.23e-01 100.0% 99.5%
2g5dA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.70 62.0 4.63e-01 100.0% 99.2%
2crhA01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 56.0 4.54e-01 100.0% 46.1%
6wb4B01 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.70 54.0 3.38e-01 100.0% 15.1%
2bbuA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.70 54.0 3.95e-01 100.0% 30.1%
3czbA02 2.40.240.50 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Barwin-like endoglucanases 0.69 60.0 4.35e-01 100.0% 97.4%
5ggiB01 3.90.550.10 Alpha Beta › Alpha-Beta Complex › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A › Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 0.69 60.0 3.93e-01 100.0% 81.3%
2ci8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.68 53.0 5.30e-01 100.0% 83.9%
1xa6A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 52.0 4.23e-01 100.0% 44.2%
3us4A00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.67 53.0 4.37e-01 100.0% 48.5%
2dcnA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.67 55.0 3.37e-01 100.0% 15.6%
6xzqA01 3.40.91.90 Alpha Beta › 3-Layer(aba) Sandwich › Restriction Endonuclease › Influenza RNA-dependent RNA polymerase subunit PA, endonuclease domain 0.65 46.0 3.31e-01 100.0% 24.7%
2zyzC00 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.65 48.0 4.02e-01 81.1% 51.0%
2ci9B00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.65 51.0 4.26e-01 100.0% 48.0%
4z32C02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 50.0 4.12e-01 100.0% 46.5%
3ieyB00 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 48.0 3.51e-01 81.1% 32.2%
1milA00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.64 49.0 3.99e-01 100.0% 43.3%
1r0vA01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 47.0 4.24e-01 81.1% 58.4%
1a79A01 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.64 47.0 3.88e-01 81.1% 49.0%
3ddjA01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.64 45.0 3.48e-01 98.1% 30.9%
2a6qA01 3.40.1620.10 Alpha Beta › 3-Layer(aba) Sandwich › YefM-like fold › YefM-like domain 0.63 43.0 4.65e-01 75.5% 88.4%
6mtzA01 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.63 55.0 4.40e-01 100.0% 57.0%
1x6vA02 3.10.400.10 Alpha Beta › Roll › Sulfate adenylyltransferase › Sulfate adenylyltransferase 0.63 55.0 3.94e-01 100.0% 80.4%
5fl3A01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.62 49.0 4.05e-01 88.7% 97.0%
2el8A01 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.62 50.0 4.22e-01 96.2% 52.7%
1rq8A00 3.30.110.60 Alpha Beta › 2-Layer Sandwich › Translation Initiation Factor IF3 › YhbY-like 0.61 45.0 3.81e-01 83.0% 72.9%
3buxB03 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 49.0 4.30e-01 100.0% 58.1%
2l3tA02 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 51.0 4.26e-01 100.0% 53.0%
1rpyB00 3.30.505.10 Alpha Beta › 2-Layer Sandwich › SHC Adaptor Protein › SH2 domain 0.61 49.0 4.29e-01 100.0% 58.1%
4wjmA00 3.40.1190.20 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Ribokinase 0.60 50.0 3.09e-01 100.0% 15.7%
6upsA01 3.40.395.10 Alpha Beta › 3-Layer(aba) Sandwich › Adenoviral Proteinase; Chain › Adenoviral Proteinase; Chain A 0.60 51.0 3.74e-01 100.0% 38.1%
4dt4A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.60 44.0 4.39e-01 81.1% 80.7%
3ajvC02 3.40.1350.10 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.59 50.0 4.22e-01 96.2% 56.0%
6yiiA01 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.59 46.0 3.09e-01 88.7% 79.5%
4j3cA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.59 49.0 4.68e-01 100.0% 90.6%
1wv4B00 2.30.110.10 Mainly Beta › Roll › Pnp Oxidase; Chain A › Electron Transport, Fmn-binding Protein; Chain A 0.59 46.0 3.46e-01 92.5% 64.9%
1yelA00 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.59 45.0 3.72e-01 86.8% 55.9%
3jvvA01 3.30.450.90 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.59 46.0 3.84e-01 88.7% 97.0%
4hn3A00 3.10.570.10 Alpha Beta › Roll › sex pheromone staph- cam373 precursor fold › sex pheromone staph- cam373 precursor domain 0.58 48.0 3.06e-01 100.0% 18.4%
3jtzA00 3.30.160.390 Alpha Beta › 2-Layer Sandwich › Double Stranded RNA Binding Domain › Integrase, DNA-binding domain 0.58 46.0 4.04e-01 100.0% 59.7%
3oi8A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.58 42.0 3.67e-01 94.3% 47.3%
1ce7A01 3.40.420.10 Alpha Beta › 3-Layer(aba) Sandwich › Ricin (A subunit); domain 1 › Ricin (A subunit), domain 1 0.58 50.0 3.59e-01 100.0% 46.3%
5dm6S01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.58 47.0 4.17e-01 98.1% 100.0%
1vhkA01 2.40.240.20 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Hypothetical PUA domain-like; domain 1 0.57 47.0 4.34e-01 100.0% 90.4%
7ahhC02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.57 46.0 3.84e-01 98.1% 54.3%
5ghrA02 3.10.310.30 Alpha Beta › Roll › Diaminopimelate Epimerase; Chain A, domain 1 › 0.57 48.0 3.76e-01 100.0% 62.4%
6mzoA01 3.40.50.11970 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › 0.56 47.0 3.71e-01 100.0% 48.4%
3licA02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.56 44.0 3.84e-01 88.7% 65.5%
4hg0A01 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 47.0 3.56e-01 100.0% 42.2%
1feuA01 2.40.240.10 Mainly Beta › Beta Barrel › Ribosomal Protein L25; Chain P › Ribosomal Protein L25; Chain P 0.56 45.0 4.00e-01 100.0% 96.7%
6euaA01 3.90.215.10 Alpha Beta › Alpha-Beta Complex › Gamma Fibrinogen; Chain A, domain 1 › Gamma Fibrinogen, chain A, domain 1 0.56 45.0 3.50e-01 98.1% 54.0%
4wpzA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.56 44.0 2.69e-01 92.5% 84.5%
4lduA02 2.40.330.10 Mainly Beta › Beta Barrel › At1g16640 B3 domain › DNA-binding pseudobarrel domain 0.56 43.0 3.54e-01 88.7% 65.1%
3fhmA00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.56 46.0 3.55e-01 100.0% 46.3%
2xbkA00 1.10.630.10 Mainly Alpha › Orthogonal Bundle › Cytochrome p450 › Cytochrome P450 0.55 40.0 2.46e-01 81.1% 41.7%
1x99A00 2.60.270.20 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Cytolysin/lectin 0.55 42.0 3.21e-01 90.6% 54.5%
3hf7A00 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 45.0 3.56e-01 100.0% 48.8%
1mhmA00 3.60.90.10 Alpha Beta › 4-Layer Sandwich › S-adenosylmethionine decarboxylase › S-adenosylmethionine decarboxylase 0.54 47.0 3.07e-01 100.0% 58.5%
8ciwA02 2.40.110.10 Mainly Beta › Beta Barrel › Butyryl-CoA Dehydrogenase, subunit A; domain 2 › Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.54 45.0 3.50e-01 100.0% 86.5%
3orgA02 3.10.580.10 Alpha Beta › Roll › CBS-domain › CBS-domain 0.54 44.0 3.51e-01 100.0% 43.7%
1wu7A01 3.30.930.10 Alpha Beta › 2-Layer Sandwich › BirA Bifunctional Protein; domain 2 › Bira Bifunctional Protein; Domain 2 0.53 43.0 2.90e-01 100.0% 82.6%
3a57A00 2.60.270.30 Mainly Beta › Sandwich › Mutm (Fpg) Protein; Chain: A, domain 2 › Vibrio parahaemolyticus thermostable direct hemolysin 0.53 42.0 3.13e-01 92.5% 57.1%
1y8cA02 2.20.25.110 Mainly Beta › Single Sheet › N-terminal domain of TfIIb › S-adenosyl-L-methionine-dependent methyltransferases 0.53 35.0 3.42e-01 71.7% 60.0%
5c0pA00 2.115.10.20 Mainly Beta › 5 Propeller › Tachylectin-2; Chain A › Glycosyl hydrolase domain; family 43 0.53 43.0 2.78e-01 96.2% 40.5%
2w01B00 3.30.70.1230 Alpha Beta › 2-Layer Sandwich › Alpha-Beta Plaits › Nucleotide cyclase, GGDEF domain 0.53 39.0 2.84e-01 90.6% 65.0%
3r7wB02 3.30.450.190 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › 0.52 38.0 3.16e-01 86.8% 38.1%
2gjwC01 3.40.1350.150 Alpha Beta › 3-Layer(aba) Sandwich › Trna Endonuclease; Chain: A, domain 1 › 0.52 37.0 2.97e-01 84.9% 32.9%
2kr7A02 2.40.10.330 Mainly Beta › Beta Barrel › Thrombin, subunit H › 0.52 37.0 3.69e-01 81.1% 78.9%
4l2iA01 3.40.50.620 Alpha Beta › 3-Layer(aba) Sandwich › Rossmann fold › HUPs 0.51 41.0 2.92e-01 100.0% 82.9%
4kh9B02 2.60.40.1930 Mainly Beta › Sandwich › Immunoglobulin-like › Macroglobulin (MG2) domain 0.51 38.0 3.17e-01 86.8% 48.7%
4s21B02 3.30.450.20 Alpha Beta › 2-Layer Sandwich › Beta-Lactamase › PAS domain 0.51 37.0 3.01e-01 83.0% 61.3%
ECOD (73)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
4961968 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.80 70.0 4.86e-01 100.0% 40.0%
4955625 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.77 66.0 4.69e-01 100.0% 42.4%
1118504 286.1.1.4 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Pro_racemase 0.77 67.0 4.77e-01 100.0% 41.6%
3970157 286.1.1.0 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like 0.76 67.0 4.94e-01 100.0% 45.3%
4955882 2492.1.1.18 a+b three layers › Cytidine deaminase-like › Cytidine deaminase-like › Cytidine deaminase-like › Prok-JAB 0.76 61.0 4.55e-01 100.0% 36.2%
3587565 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.76 66.0 4.88e-01 100.0% 45.0%
4350703 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.75 66.0 5.18e-01 100.0% 54.5%
4297075 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.74 65.0 4.82e-01 100.0% 47.4%
3386570 286.1.1.1 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › DAP_epimerase 0.74 65.0 4.83e-01 100.0% 45.5%
4217929 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.73 65.0 4.70e-01 100.0% 44.1%
3831291 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.73 63.0 4.40e-01 100.0% 36.3%
5039376 286.1.1.2 a+b complex topology › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › Diaminopimelate epimerase-like › PhzC-PhzF 0.73 64.0 4.61e-01 100.0% 42.3%
4322510 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.72 60.0 4.78e-01 100.0% 46.7%
802 239.1.1.4 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › MltA 0.71 62.0 4.41e-01 100.0% 99.4%
3821093 328.4.1.1 a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.70 55.0 4.56e-01 86.8% 76.8%
3400185 2007.1.2.31 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Periplasmic binding protein-like I › LBD_receptor 0.70 59.0 4.17e-01 100.0% 33.3%
3324925 1.1.11.0 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain 0.69 48.0 4.51e-01 73.6% 70.8%
3434218 328.4.1.1 a+b two layers › IF3-like › YhbY-like › YhbY-like › CRS1_YhbY 0.69 55.0 4.30e-01 90.6% 64.2%
5016676 2007.1.1.15 a/b three-layered sandwiches › Flavodoxin-like › Class I glutamine amidotransferase-like › Class I glutamine amidotransferase-like › DUF2124 0.68 55.0 4.05e-01 100.0% 31.6%
3842643 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 53.0 4.08e-01 100.0% 37.6%
1560911 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 55.0 4.14e-01 100.0% 36.8%
3843531 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.67 55.0 4.50e-01 100.0% 49.0%
3394097 7502.1.1.0 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS 0.66 59.0 4.74e-01 100.0% 73.0%
3388234 2006.1.2.0 a/b three-layered sandwiches › HAD domain-like › HAD domain-related › DHH phosphoesterases 0.66 57.0 3.51e-01 100.0% 19.1%
3801304 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.66 51.0 3.86e-01 100.0% 33.6%
5049089 223.2.1.0 a+b three layers › Profilin-like › profilin-like › profilin-like 0.65 52.0 4.08e-01 90.6% 55.0%
3511269 214.1.1.9 a+b two layers › SH2 › SH2 › SH2 › DUF7063 0.65 51.0 4.01e-01 100.0% 39.2%
3839890 5104.1.1.0 a+b three layers › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases › C-terminal domain in DHH phosphoesterases 0.65 56.0 3.44e-01 100.0% 18.6%
3700436 7502.1.1.2 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Brix 0.65 55.0 3.98e-01 100.0% 48.1%
1392754 2008.2.1.1 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like › tRNA_int_endo 0.64 48.0 4.02e-01 81.1% 51.6%
3414351 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.64 50.0 3.55e-01 100.0% 26.9%
4223216 214.1.1.7 a+b two layers › SH2 › SH2 › SH2 › SH2_1 0.63 54.0 4.14e-01 100.0% 40.8%
3589428 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.63 52.0 4.89e-01 100.0% 90.0%
3282232 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.63 50.0 3.68e-01 90.6% 41.3%
3827097 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.62 49.0 3.88e-01 86.8% 58.2%
5039455 223.1.1.27 a+b three layers › Profilin-like › sensor domains › sensor domains › PAS_10 0.62 48.0 3.81e-01 90.6% 57.7%
4138642 2004.1.1.0 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases 0.61 47.0 3.55e-01 100.0% 32.4%
3656514 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.61 47.0 3.96e-01 86.8% 60.0%
3963338 2004.1.1.42 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › T2SSE 0.61 50.0 3.08e-01 100.0% 27.2%
3875074 7502.1.1.7 a/b three-layered sandwiches › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › Anticodon-binding domain of Class II aaRS › HGTP_anticodon2 0.60 53.0 4.21e-01 100.0% 68.2%
4358836 4267.1.1.1 a+b duplicates or obligate multimers › YefM-like › YefM-like › YefM-like › PhdYeFM_antitox 0.60 45.0 4.02e-01 96.2% 55.0%
3629993 214.1.1.1 a+b two layers › SH2 › SH2 › SH2 › SH2 0.59 51.0 4.01e-01 100.0% 85.0%
3873622 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.59 40.0 2.72e-01 71.7% 18.6%
5045741 375.1.1.0 few secondary structure elements › Rubredoxin-like › Rubredoxin-related › Rubredoxin-related 0.59 44.0 4.25e-01 86.8% 81.5%
4143576 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.59 48.0 4.51e-01 100.0% 92.9%
3263053 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.59 48.0 4.53e-01 100.0% 91.4%
4182599 223.2.1.20 a+b three layers › Profilin-like › profilin-like › profilin-like › Fuz_longin_1 0.58 42.0 3.12e-01 79.2% 31.6%
4265687 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.58 50.0 4.22e-01 100.0% 96.8%
1108022 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.58 47.0 4.13e-01 98.1% 97.7%
4024774 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.58 46.0 4.31e-01 100.0% 89.3%
3380863 2007.2.3.9 a/b three-layered sandwiches › Flavodoxin-like › Flavoproteins/Phosphotyrosine protein phosphatases-like › (Phosphotyrosine protein) phosphatases II › PTPlike_phytase 0.57 43.0 2.46e-01 90.6% 38.8%
1879702 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.57 47.0 4.06e-01 100.0% 93.6%
3646946 1.1.11.1 beta barrels › cradle loop barrel › RIFT-related › Type II restriction endonuclease effector domain › B3 0.57 43.0 3.64e-01 86.8% 59.6%
5064069 2008.2.1.0 a/b three-layered sandwiches › Restriction endonuclease-like › tRNA-intron endonuclease catalytic domain-like › tRNA-intron endonuclease catalytic domain-like 0.56 41.0 3.72e-01 83.0% 56.2%
2604100 7575.1.1.4 a/b three-layered sandwiches › Caspase-like › Caspase-like › Caspase-like › Peptidase_C11 0.56 47.0 2.96e-01 100.0% 17.6%
139132 223.1.1.0 a+b three layers › Profilin-like › sensor domains › sensor domains 0.56 44.0 3.82e-01 88.7% 64.8%
4494049 5.1.4.35 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Lactonase 0.56 48.0 2.92e-01 98.1% 26.6%
4987228 331.3.1.0 a+b two layers › TBP-like › Bet v1-like › Bet v1-like 0.56 48.0 3.40e-01 98.1% 36.1%
4049740 1.1.9.20 beta barrels › cradle loop barrel › RIFT-related › PUA domain › PUA_4 0.56 45.0 4.21e-01 100.0% 89.3%
4285300 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.56 45.0 3.91e-01 100.0% 94.7%
3591940 223.2.1.19 a+b three layers › Profilin-like › profilin-like › profilin-like › Intu_longin_1 0.55 42.0 3.01e-01 88.7% 34.2%
3964288 206.1.1.0 a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.55 40.0 2.71e-01 86.8% 39.6%
4493865 239.1.1.3 beta barrels › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal protein L25-like › Ribosomal_L25p 0.55 45.0 3.83e-01 100.0% 95.0%
3967965 1.1.9.0 beta barrels › cradle loop barrel › RIFT-related › PUA domain 0.54 42.0 4.05e-01 100.0% 90.0%
5040169 5.1.4.0 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed 0.53 45.0 2.74e-01 100.0% 36.6%
3632850 5.1.4.119 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 7-bladed › Rav1p_C 0.53 47.0 2.84e-01 98.1% 21.6%
3387410 2.1.1.0 beta barrels › OB-fold › Nucleic acid-binding protein › Nucleic acid-binding protein 0.53 43.0 3.53e-01 100.0% 80.0%
3290171 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.53 45.0 3.53e-01 100.0% 51.7%
1564338 5.1.2.8 beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 5-bladed › Glyco_hydro_43 0.53 43.0 2.78e-01 96.2% 40.5%
3721598 244.1.1.0 a+b two layers › FAD-linked reductases, C-terminal domain-like › FAD-linked reductases-C › FAD-linked reductases-C 0.52 42.0 3.32e-01 100.0% 57.7%
3579711 63.1.1.3 beta barrels › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › Mannose 6-phosphate receptor domain › PRKCSH 0.51 38.0 2.48e-01 81.1% 87.3%
3480669 227.1.1.11 a+b two layers › DNA clamp › DNA clamp › DNA clamp › Hus1 0.51 40.0 3.04e-01 90.6% 90.9%
3498699 2004.1.1.19 a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › Ras 0.50 41.0 2.92e-01 100.0% 30.8%