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MW534375.1__QSL99804.1__SEA_ODAY_60__00060

Bact-Vir

MW534375.1__QSL99804.1__SEA_ODAY_60__00060

Identity

Accession:
MW534375 ↗
Kingdom:
phage

Quality

88.7 mean pLDDT

Taxonomy

Heunggongvirae› Uroviricota› Caudoviricetes› Gordonia_phage_ODay

TaxID: 2812933

Cluster

Singleton — not in a non-trivial cluster

3D Structure

Download PDB Download Scores JSON

Domains

high = three domain segmentations agree, medium = two domain segmentations agree. Numbered high-first then medium, N→C within each tier.

D1 high residues 14-80
PDB
Domain cluster: rep: NC_048018.1__YP_009806932.1__HOT72_gp084__00084__D75-141
CATH (13)
Domain IDClass IDClassificationTM-scoreBitsE-valueQ covT cov
3lxrF00 1.10.4120.20 Mainly Alpha › Orthogonal Bundle › SopE-like GEF fold › 0.67 58.0 4.30e-01 100.0% 85.6%
1c1fA00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.57 40.0 3.20e-01 73.1% 74.8%
5nslA02 2.60.120.560 Mainly Beta › Sandwich › Jelly Rolls › Exo-inulinase; domain 1 0.56 41.0 2.95e-01 77.6% 68.9%
1ukfA00 3.90.70.20 Alpha Beta › Alpha-Beta Complex › Cathepsin B; Chain A › 0.56 40.0 2.86e-01 76.1% 26.6%
6e20A00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.54 38.0 3.07e-01 73.1% 75.0%
4py5A01 3.30.310.10 Alpha Beta › 2-Layer Sandwich › TATA-Binding Protein › TATA-Binding Protein 0.54 42.0 4.17e-01 100.0% 83.3%
1gqyB02 3.40.1190.10 Alpha Beta › 3-Layer(aba) Sandwich › UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase › Mur-like, catalytic domain 0.53 43.0 3.15e-01 97.0% 53.9%
2v43A01 2.50.20.10 Mainly Beta › Clam › outer membrane lipoprotein receptor (LolB), chain A › Lipoprotein localisation LolA/LolB/LppX 0.53 40.0 2.99e-01 83.6% 85.8%
3p34A02 3.30.1120.30 Alpha Beta › 2-Layer Sandwich › Arylsulfatase, C-terminal domain › POLO box domain 0.52 45.0 3.97e-01 97.0% 69.1%
3h27A00 3.50.50.100 Alpha Beta › 3-Layer(bba) Sandwich › FAD/NAD(P)-binding domain › 0.51 45.0 2.75e-01 98.5% 29.8%
3aqgB00 2.100.10.30 Mainly Beta › Aligned Prism › Vitelline Membrane Outer Layer Protein I, subunit A › Jacalin-like lectin domain 0.51 35.0 2.84e-01 83.6% 34.1%
3v5nB02 3.30.360.10 Alpha Beta › 2-Layer Sandwich › Dihydrodipicolinate Reductase; domain 2 › Dihydrodipicolinate Reductase; domain 2 0.51 46.0 3.33e-01 100.0% 84.2%
3wucB00 2.60.120.200 Mainly Beta › Sandwich › Jelly Rolls › 0.50 39.0 3.18e-01 88.1% 78.1%
ECOD (22)
UIDF-IDClassificationTM-scoreBitsE-valueQ covT cov
3183973 10.1.1.26 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Glyco_hydro_32C 0.59 43.0 3.28e-01 77.6% 78.1%
3246494 292.2.1.1 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain › POLO_box 0.59 51.0 3.51e-01 100.0% 76.7%
3798012 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.58 50.0 3.44e-01 100.0% 39.6%
3621362 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.56 47.0 2.93e-01 100.0% 22.9%
4950698 2004.1.1.211 ↗ a/b three-layered sandwiches › P-loop domains-like › P-loop domains-related › P-loop containing nucleoside triphosphate hydrolases › CLP1_P 0.55 43.0 3.14e-01 85.1% 36.4%
3217785 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.55 39.0 3.00e-01 73.1% 67.1%
3765561 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.55 49.0 3.39e-01 100.0% 94.0%
3577681 883.1.1.2 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP_C 0.55 47.0 3.23e-01 100.0% 37.0%
3391671 10.1.1.4 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › Gal-bind_lectin 0.54 45.0 3.43e-01 91.0% 85.2%
3230113 4.1.1.315 ↗ beta barrels › SH3 › SH3 › SH3 › SH3_12, XRN1_D1 0.54 43.0 2.66e-01 86.6% 30.4%
5051699 331.10.2.1 ↗ a+b two layers › TBP-like › S-adenosylmethionine decarboxylase-related › Bacterial S-adenosylmethionine decarboxylase › AdoMet_dc 0.53 43.0 3.72e-01 92.5% 74.5%
4291626 292.2.1.0 ↗ a+b two layers › RIP/Polo-box domain › Polo-box domain › Polo-box domain 0.53 41.0 3.79e-01 89.6% 96.8%
3242234 206.1.1.0 ↗ a+b complex topology › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase/SAICAR synthase/ATP-grasp › Protein kinase 0.53 44.0 2.63e-01 92.5% 18.1%
3581282 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.53 46.0 2.81e-01 100.0% 20.2%
3708732 5.1.3.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 6-bladed 0.53 45.0 2.96e-01 100.0% 43.1%
3879656 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.53 47.0 3.38e-01 98.5% 44.9%
3934912 11.1.1.0 ↗ beta sandwiches › Immunoglobulin-like beta-sandwich › Immunoglobulin-related › Immunoglobulin/Fibronectin type III/E set domains/PapD-like 0.52 42.0 3.38e-01 100.0% 41.9%
4290004 10.1.1.21 ↗ beta sandwiches › jelly-roll › Concanavalin A-like › Concanavalin A-like lectins/glucanases › 3keto-disac_hyd 0.52 40.0 3.01e-01 83.6% 71.5%
3630137 883.1.1.15 ↗ a+b complex topology › Aha1/BPI domain-like › Aha1/BPI domain-like › Aha1/BPI domain-like › LBP_BPI_CETP+LBP_BPI_CETP_C 0.52 43.0 2.69e-01 100.0% 37.4%
3407758 220.1.1.8 ↗ beta barrels › PH domain-like › PH domain-like › PH domain-like › GRAM 0.51 43.0 3.70e-01 98.5% 93.0%
3540021 633.23.1.1 ↗ alpha bundles › Bromodomain-like › Claudin › Claudin › PMP22_Claudin 0.51 45.0 3.26e-01 98.5% 93.8%
3601907 5.1.1.0 ↗ beta duplicates or obligate multimers › beta-propeller-like › beta-propeller › 4-bladed 0.51 40.0 2.91e-01 85.1% 41.3%